RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 FMN2Q9NZ56 1722 aa26.12■■□□□ 1.77
NPHP4-210ENST00000506941 SIRT1Q96EB6 747 aa26.12■■□□□ 1.77
NPHP4-210ENST00000506941 TRAK1Q9UPV9 953 aa26.12■■□□□ 1.77
NPHP4-210ENST00000506941 ATF3P18847 181 aa26.11■■□□□ 1.77
NPHP4-210ENST00000506941 CADPS2Q86UW7 1296 aa26.11■■□□□ 1.77
NPHP4-210ENST00000506941 MST1RQ04912 1400 aa26.11■■□□□ 1.77
NPHP4-210ENST00000506941 PRAM1Q96QH2 718 aa26.1■■□□□ 1.77
NPHP4-210ENST00000506941 RGPD8O14715 1765 aaPredicted RBP26.1■■□□□ 1.77
NPHP4-210ENST00000506941 ADGRB2O60241 1585 aa26.09■■□□□ 1.77
NPHP4-210ENST00000506941 SLAIN2Q9P270 581 aa26.09■■□□□ 1.77
NPHP4-210ENST00000506941 RALGAPBQ86X10 1494 aa26.07■■□□□ 1.76
NPHP4-210ENST00000506941 QRICH2Q9H0J4 1663 aa26.06■■□□□ 1.76
NPHP4-210ENST00000506941 SAFB2Q14151 953 aaKnown RBP eCLIP26.06■■□□□ 1.76
NPHP4-210ENST00000506941 PHLPP1O60346 1717 aa26.04■■□□□ 1.76
NPHP4-210ENST00000506941 ROCK2O75116 1388 aaKnown RBP26.04■■□□□ 1.76
NPHP4-210ENST00000506941 POGKQ9P215 609 aa26.03■■□□□ 1.76
NPHP4-210ENST00000506941 GPRASP1Q5JY77 1395 aa26.03■■□□□ 1.76
NPHP4-210ENST00000506941 NHSL1Q5SYE7 1610 aa26.03■■□□□ 1.76
NPHP4-210ENST00000506941 C1orf167Q5SNV9 1468 aa26.02■■□□□ 1.76
NPHP4-210ENST00000506941 HSPA1LP34931 641 aa26.01■■□□□ 1.75
NPHP4-210ENST00000506941 USP32Q8NFA0 1604 aa26.01■■□□□ 1.75
NPHP4-210ENST00000506941 AHDC1Q5TGY3 1603 aaPredicted RBP25.99■■□□□ 1.75
NPHP4-210ENST00000506941 TIMELESSQ9UNS1 1208 aa25.98■■□□□ 1.75
NPHP4-210ENST00000506941 MINK1Q8N4C8 1332 aaPredicted RBP25.97■■□□□ 1.75
NPHP4-210ENST00000506941 COL16A1Q07092 1604 aaPredicted RBP25.97■■□□□ 1.75
NPHP4-210ENST00000506941 BRINP3Q76B58 766 aa25.97■■□□□ 1.75
NPHP4-210ENST00000506941 HIRIP3Q9BW71 556 aaPredicted RBP25.96■■□□□ 1.75
NPHP4-210ENST00000506941 NUTM2FA1L443 756 aa25.92■■□□□ 1.74
NPHP4-210ENST00000506941 KIF1AQ12756 1690 aa25.92■■□□□ 1.74
NPHP4-210ENST00000506941 ITSN1Q15811 1721 aa25.91■■□□□ 1.74
NPHP4-210ENST00000506941 CENPJQ9HC77 1338 aaPredicted RBP25.91■■□□□ 1.74
NPHP4-210ENST00000506941 ORAI2Q96SN7 254 aa25.91■■□□□ 1.74
NPHP4-210ENST00000506941 TULP4Q9NRJ4 1543 aa25.91■■□□□ 1.74
NPHP4-210ENST00000506941 CARD11Q9BXL7 1154 aa25.9■■□□□ 1.74
NPHP4-210ENST00000506941 TOPAZ1Q8N9V7 1692 aa25.89■■□□□ 1.73
NPHP4-210ENST00000506941 EIF3AQ14152 1382 aaKnown RBP25.87■■□□□ 1.73
NPHP4-210ENST00000506941 ANKARQ7Z5J8 1434 aa25.87■■□□□ 1.73
NPHP4-210ENST00000506941 WASLO00401 505 aaPredicted RBP25.86■■□□□ 1.73
NPHP4-210ENST00000506941 DDX17Q92841 729 aaKnown RBP25.85■■□□□ 1.73
NPHP4-210ENST00000506941 ATP7BP35670 1465 aa25.85■■□□□ 1.73
NPHP4-210ENST00000506941 ESCO1Q5FWF5 840 aa25.84■■□□□ 1.73
NPHP4-210ENST00000506941 PRR36Q9H6K5 1346 aa25.84■■□□□ 1.73
NPHP4-210ENST00000506941 SHPRHQ149N8 1683 aa25.83■■□□□ 1.73
NPHP4-210ENST00000506941 PXDNQ92626 1479 aa25.8■■□□□ 1.72
NPHP4-210ENST00000506941 CDK19Q9BWU1 502 aa25.8■■□□□ 1.72
NPHP4-210ENST00000506941 SBNO2Q9Y2G9 1366 aa25.77■■□□□ 1.72
NPHP4-210ENST00000506941 PHF8Q9UPP1 1060 aa25.76■■□□□ 1.71
NPHP4-210ENST00000506941 TRPM3Q9HCF6 1732 aaPredicted RBP25.75■■□□□ 1.71
NPHP4-210ENST00000506941 USP47Q96K76 1375 aa25.75■■□□□ 1.71
NPHP4-210ENST00000506941 SOS2Q07890 1332 aaPredicted RBP25.75■■□□□ 1.71
NPHP4-210ENST00000506941 NPHP3Q7Z494 1330 aa25.74■■□□□ 1.71
NPHP4-210ENST00000506941 FOXO3O43524 673 aa25.74■■□□□ 1.71
NPHP4-210ENST00000506941 NUDT16Q96DE0 195 aaKnown RBP25.74■■□□□ 1.71
NPHP4-210ENST00000506941 MED1Q15648 1581 aaPredicted RBP25.73■■□□□ 1.71
NPHP4-210ENST00000506941 JCADQ9P266 1359 aa25.72■■□□□ 1.71
NPHP4-210ENST00000506941 PMFBP1Q8TBY8 1022 aa25.72■■□□□ 1.71
NPHP4-210ENST00000506941 CABP2Q9NPB3 220 aa25.72■■□□□ 1.71
NPHP4-210ENST00000506941 EVC2Q86UK5 1308 aa25.71■■□□□ 1.71
NPHP4-210ENST00000506941 XPCQ01831 940 aaPredicted RBP25.71■■□□□ 1.71
NPHP4-210ENST00000506941 ST20-MTHFSA0A0A6YYL1 179 aa25.7■■□□□ 1.7
NPHP4-210ENST00000506941 SRPK2P78362 688 aaKnown RBP25.7■■□□□ 1.7
NPHP4-210ENST00000506941 COL22A1Q8NFW1 1626 aaPredicted RBP25.7■■□□□ 1.7
NPHP4-210ENST00000506941 TESK2Q96S53 571 aa25.68■■□□□ 1.7
NPHP4-210ENST00000506941 AKAP12Q02952 1782 aa25.68■■□□□ 1.7
NPHP4-210ENST00000506941 ALS2Q96Q42 1657 aa25.68■■□□□ 1.7
NPHP4-210ENST00000506941 PPIP5K1Q6PFW1 1433 aa25.67■■□□□ 1.7
NPHP4-210ENST00000506941 LRRC59Q96AG4 307 aaKnown RBP25.67■■□□□ 1.7
NPHP4-210ENST00000506941 PNPLA6Q8IY17 1366 aa25.67■■□□□ 1.7
NPHP4-210ENST00000506941 CCDC61Q9Y6R9 512 aa25.66■■□□□ 1.7
NPHP4-210ENST00000506941 LRP6O75581 1613 aa25.64■■□□□ 1.7
NPHP4-210ENST00000506941 KRT28Q7Z3Y7 464 aa25.64■■□□□ 1.7
NPHP4-210ENST00000506941 ABCA3Q99758 1704 aa25.63■■□□□ 1.69
NPHP4-210ENST00000506941 POLR3AO14802 1390 aaPredicted RBP25.63■■□□□ 1.69
NPHP4-210ENST00000506941 PLEKHG3A1L390 1219 aa25.61■■□□□ 1.69
NPHP4-210ENST00000506941 NGDNQ8NEJ9 315 aaKnown RBP25.61■■□□□ 1.69
NPHP4-210ENST00000506941 TNS3Q68CZ2 1445 aa25.61■■□□□ 1.69
NPHP4-210ENST00000506941 MARF1Q9Y4F3 1742 aaKnown RBP25.6■■□□□ 1.69
NPHP4-210ENST00000506941 DISP3Q9P2K9 1392 aa25.6■■□□□ 1.69
NPHP4-210ENST00000506941 PSME1Q06323 249 aa25.6■■□□□ 1.69
NPHP4-210ENST00000506941 ACEP12821 1306 aa25.6■■□□□ 1.69
NPHP4-210ENST00000506941 SPATA31A3Q5VYP0 1347 aa25.6■■□□□ 1.69
NPHP4-210ENST00000506941 SBNO1A3KN83 1393 aa25.59■■□□□ 1.69
NPHP4-210ENST00000506941 ATAD2Q6PL18 1390 aa25.59■■□□□ 1.69
NPHP4-210ENST00000506941 MON2Q7Z3U7 1717 aa25.59■■□□□ 1.69
NPHP4-210ENST00000506941 CRYBG1Q9Y4K1 1723 aa25.59■■□□□ 1.69
NPHP4-210ENST00000506941 SPATA31A6Q5VVP1 1343 aa25.59■■□□□ 1.69
NPHP4-210ENST00000506941 CABP1Q9NZU7 370 aa25.57■■□□□ 1.68
NPHP4-210ENST00000506941 NRKQ7Z2Y5 1582 aa25.56■■□□□ 1.68
NPHP4-210ENST00000506941 MYOM1P52179 1685 aa25.55■■□□□ 1.68
NPHP4-210ENST00000506941 HSPA5P11021 654 aaKnown RBP25.53■■□□□ 1.68
NPHP4-210ENST00000506941 CD163L1Q9NR16 1453 aa25.53■■□□□ 1.68
NPHP4-210ENST00000506941 NUTM2BA6NNL0 878 aaPredicted RBP25.52■■□□□ 1.68
NPHP4-210ENST00000506941 NUTM2EB1AL46 878 aaPredicted RBP25.52■■□□□ 1.68
NPHP4-210ENST00000506941 EIF4G2P78344 907 aaKnown RBP eCLIP25.52■■□□□ 1.68
NPHP4-210ENST00000506941 NUTM2AQ8IVF1 878 aaPredicted RBP25.52■■□□□ 1.68
NPHP4-210ENST00000506941 PUS7Q96PZ0 661 aaKnown RBP25.51■■□□□ 1.67
NPHP4-210ENST00000506941 USP6P35125 1406 aa25.51■■□□□ 1.67
NPHP4-210ENST00000506941 PIK3C2AO00443 1686 aa25.5■■□□□ 1.67
NPHP4-210ENST00000506941 ARHGEF10O15013 1369 aa25.5■■□□□ 1.67
NPHP4-210ENST00000506941 SLC24A1O60721 1099 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms