RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 NALCNQ8IZF0 1738 aa19.15■□□□□ 0.66
TCOF1-209ENST00000506630 ADGRF5Q8IZF2 1346 aa19.15■□□□□ 0.66
TCOF1-209ENST00000506630 MYOM2P54296 1465 aa19.14■□□□□ 0.65
TCOF1-209ENST00000506630 LAMC1P11047 1609 aa19.13■□□□□ 0.65
TCOF1-209ENST00000506630 C1orf167Q5SNV9 1468 aa19.12■□□□□ 0.65
TCOF1-209ENST00000506630 ROBO2Q9HCK4 1378 aa19.12■□□□□ 0.65
TCOF1-209ENST00000506630 USP21Q9UK80 565 aa19.12■□□□□ 0.65
TCOF1-209ENST00000506630 PIK3C2GO75747 1445 aa19.11■□□□□ 0.65
TCOF1-209ENST00000506630 ATAD2Q6PL18 1390 aa19.11■□□□□ 0.65
TCOF1-209ENST00000506630 TRPC5Q9UL62 973 aaPredicted RBP19.1■□□□□ 0.65
TCOF1-209ENST00000506630 SOS2Q07890 1332 aaPredicted RBP19.09■□□□□ 0.65
TCOF1-209ENST00000506630 ORAI2Q96SN7 254 aa19.09■□□□□ 0.65
TCOF1-209ENST00000506630 NRXN1Q9ULB1 1477 aa19.09■□□□□ 0.65
TCOF1-209ENST00000506630 KNDC1Q76NI1 1749 aa19.08■□□□□ 0.65
TCOF1-209ENST00000506630 DHX57Q6P158 1386 aaKnown RBP19.08■□□□□ 0.65
TCOF1-209ENST00000506630 FNBP4Q8N3X1 1017 aaPredicted RBP19.06■□□□□ 0.64
TCOF1-209ENST00000506630 PTCH1Q13635 1447 aa19.06■□□□□ 0.64
TCOF1-209ENST00000506630 TMEM132EQ6IEE7 984 aa19.05■□□□□ 0.64
TCOF1-209ENST00000506630 DCAF11Q8TEB1 546 aa19.05■□□□□ 0.64
TCOF1-209ENST00000506630 ZRANB1Q9UGI0 708 aa19.05■□□□□ 0.64
TCOF1-209ENST00000506630 KDM2AQ9Y2K7 1162 aa19.04■□□□□ 0.64
TCOF1-209ENST00000506630 WAPLQ7Z5K2 1190 aa19.02■□□□□ 0.64
TCOF1-209ENST00000506630 STK26Q9P289 416 aa19.02■□□□□ 0.64
TCOF1-209ENST00000506630 PRAG1Q86YV5 1406 aa19.01■□□□□ 0.63
TCOF1-209ENST00000506630 CCDC125Q86Z20 511 aa19.01■□□□□ 0.63
TCOF1-209ENST00000506630 PLEKHH1Q9ULM0 1364 aa19.01■□□□□ 0.63
TCOF1-209ENST00000506630 NPHP3Q7Z494 1330 aa19■□□□□ 0.63
TCOF1-209ENST00000506630 LRPPRCP42704 1394 aaKnown RBP18.99■□□□□ 0.63
TCOF1-209ENST00000506630 ESCO1Q5FWF5 840 aa18.99■□□□□ 0.63
TCOF1-209ENST00000506630 CFAP70Q5T0N1 1121 aa18.99■□□□□ 0.63
TCOF1-209ENST00000506630 C14orf93Q9H972 538 aaKnown RBP18.99■□□□□ 0.63
TCOF1-209ENST00000506630 ATRNO75882 1429 aa18.99■□□□□ 0.63
TCOF1-209ENST00000506630 YTHDC2Q9H6S0 1430 aaKnown RBP18.99■□□□□ 0.63
TCOF1-209ENST00000506630 KIAA1210Q9ULL0 1709 aa18.98■□□□□ 0.63
TCOF1-209ENST00000506630 SIN3AQ96ST3 1273 aa18.98■□□□□ 0.63
TCOF1-209ENST00000506630 PCGF6Q9BYE7 350 aa18.98■□□□□ 0.63
TCOF1-209ENST00000506630 NEUROD1Q13562 356 aa18.97■□□□□ 0.63
TCOF1-209ENST00000506630 STAC3Q96MF2 364 aa18.97■□□□□ 0.63
TCOF1-209ENST00000506630 TECPR2O15040 1411 aa18.97■□□□□ 0.63
TCOF1-209ENST00000506630 ADGRB1O14514 1584 aa18.96■□□□□ 0.63
TCOF1-209ENST00000506630 NUTM2FA1L443 756 aa18.95■□□□□ 0.62
TCOF1-209ENST00000506630 FOXO3O43524 673 aa18.95■□□□□ 0.62
TCOF1-209ENST00000506630 GJD4Q96KN9 370 aaPredicted RBP18.95■□□□□ 0.62
TCOF1-209ENST00000506630 ABCC11Q96J66 1382 aa18.93■□□□□ 0.62
TCOF1-209ENST00000506630 COL22A1Q8NFW1 1626 aaPredicted RBP18.93■□□□□ 0.62
TCOF1-209ENST00000506630 BCL9LQ86UU0 1499 aa18.93■□□□□ 0.62
TCOF1-209ENST00000506630 ARHGEF28Q8N1W1 1705 aaKnown RBP18.92■□□□□ 0.62
TCOF1-209ENST00000506630 XPCQ01831 940 aaPredicted RBP18.92■□□□□ 0.62
TCOF1-209ENST00000506630 DLC1Q96QB1 1528 aa18.91■□□□□ 0.62
TCOF1-209ENST00000506630 CDC42BPGQ6DT37 1551 aa18.91■□□□□ 0.62
TCOF1-209ENST00000506630 PXDNQ92626 1479 aa18.9■□□□□ 0.62
TCOF1-209ENST00000506630 L3MBTL2Q969R5 705 aa18.89■□□□□ 0.61
TCOF1-209ENST00000506630 TRPM1Q7Z4N2 1603 aa18.89■□□□□ 0.61
TCOF1-209ENST00000506630 UNC5CLQ8IV45 518 aa18.88■□□□□ 0.61
TCOF1-209ENST00000506630 FMN2Q9NZ56 1722 aa18.88■□□□□ 0.61
TCOF1-209ENST00000506630 RGPD8O14715 1765 aaPredicted RBP18.88■□□□□ 0.61
TCOF1-209ENST00000506630 SAFB2Q14151 953 aaKnown RBP eCLIP18.86■□□□□ 0.61
TCOF1-209ENST00000506630 BLMP54132 1417 aaPredicted RBP18.85■□□□□ 0.61
TCOF1-209ENST00000506630 TONSLQ96HA7 1378 aa18.85■□□□□ 0.61
TCOF1-209ENST00000506630 SF3B2Q13435 895 aaKnown RBP18.85■□□□□ 0.61
TCOF1-209ENST00000506630 TRAK1Q9UPV9 953 aa18.85■□□□□ 0.61
TCOF1-209ENST00000506630 SRCAPQ6ZRS2 3230 aa18.84■□□□□ 0.61
TCOF1-209ENST00000506630 SPATA31A3Q5VYP0 1347 aa18.84■□□□□ 0.61
TCOF1-209ENST00000506630 HAP1P54257 671 aaPredicted RBP18.84■□□□□ 0.61
TCOF1-209ENST00000506630 PRAM1Q96QH2 718 aa18.84■□□□□ 0.61
TCOF1-209ENST00000506630 SIRT1Q96EB6 747 aa18.83■□□□□ 0.6
TCOF1-209ENST00000506630 POGKQ9P215 609 aa18.83■□□□□ 0.6
TCOF1-209ENST00000506630 RALGAPBQ86X10 1494 aa18.83■□□□□ 0.6
TCOF1-209ENST00000506630 ADGRB2O60241 1585 aa18.82■□□□□ 0.6
TCOF1-209ENST00000506630 KRT28Q7Z3Y7 464 aa18.82■□□□□ 0.6
TCOF1-209ENST00000506630 SLIT2O94813 1529 aa18.81■□□□□ 0.6
TCOF1-209ENST00000506630 MARF1Q9Y4F3 1742 aaKnown RBP18.81■□□□□ 0.6
TCOF1-209ENST00000506630 PSME1Q06323 249 aa18.8■□□□□ 0.6
TCOF1-209ENST00000506630 SEPT12Q8IYM1 358 aa18.8■□□□□ 0.6
TCOF1-209ENST00000506630 NBPF1Q3BBV0 1214 aa18.79■□□□□ 0.6
TCOF1-209ENST00000506630 DEFB132Q7Z7B7 95 aa18.79■□□□□ 0.6
TCOF1-209ENST00000506630 CCDC9Q9Y3X0 531 aaKnown RBP18.79■□□□□ 0.6
TCOF1-209ENST00000506630 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.79■□□□□ 0.6
TCOF1-209ENST00000506630 QRICH2Q9H0J4 1663 aa18.79■□□□□ 0.6
TCOF1-209ENST00000506630 USP32Q8NFA0 1604 aa18.78■□□□□ 0.6
TCOF1-209ENST00000506630 VPS72Q15906 364 aa18.78■□□□□ 0.6
TCOF1-209ENST00000506630 GLI3P10071 1580 aa18.77■□□□□ 0.6
TCOF1-209ENST00000506630 KIF1AQ12756 1690 aa18.77■□□□□ 0.6
TCOF1-209ENST00000506630 HIRIP3Q9BW71 556 aaPredicted RBP18.77■□□□□ 0.6
TCOF1-209ENST00000506630 MINK1Q8N4C8 1332 aaPredicted RBP18.76■□□□□ 0.59
TCOF1-209ENST00000506630 PHF8Q9UPP1 1060 aa18.76■□□□□ 0.59
TCOF1-209ENST00000506630 ROCK2O75116 1388 aaKnown RBP18.76■□□□□ 0.59
TCOF1-209ENST00000506630 PLEKHG5O94827 1062 aa18.75■□□□□ 0.59
TCOF1-209ENST00000506630 LMOD2Q6P5Q4 547 aa18.75■□□□□ 0.59
TCOF1-209ENST00000506630 KRT27Q7Z3Y8 459 aa18.75■□□□□ 0.59
TCOF1-209ENST00000506630 EP400Q96L91 3159 aa18.75■□□□□ 0.59
TCOF1-209ENST00000506630 ITSN1Q15811 1721 aa18.74■□□□□ 0.59
TCOF1-209ENST00000506630 ONECUT3O60422 494 aaPredicted RBP18.74■□□□□ 0.59
TCOF1-209ENST00000506630 CABLES1Q8TDN4 633 aa18.74■□□□□ 0.59
TCOF1-209ENST00000506630 TNS3Q68CZ2 1445 aa18.74■□□□□ 0.59
TCOF1-209ENST00000506630 A0A0G2JS52 829 aa18.73■□□□□ 0.59
TCOF1-209ENST00000506630 MYT1Q01538 1121 aa18.73■□□□□ 0.59
TCOF1-209ENST00000506630 NBPF8Q3BBV2 869 aa18.73■□□□□ 0.59
TCOF1-209ENST00000506630 PRR36Q9H6K5 1346 aa18.73■□□□□ 0.59
TCOF1-209ENST00000506630 PMFBP1Q8TBY8 1022 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms