RNA–Protein interactions for RNA: ENST00000503982.1

LSM6-203, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-203ENST00000503982 LAMC1P11047 1609 aa32.36■■■□□ 2.77
LSM6-203ENST00000503982 YTHDC2Q9H6S0 1430 aaKnown RBP32.34■■■□□ 2.77
LSM6-203ENST00000503982 NUTM2FA1L443 756 aa32.34■■■□□ 2.77
LSM6-203ENST00000503982 ESCO1Q5FWF5 840 aa32.34■■■□□ 2.77
LSM6-203ENST00000503982 ZNF772Q68DY9 489 aaPredicted RBP32.34■■■□□ 2.77
LSM6-203ENST00000503982 MYOM2P54296 1465 aa32.34■■■□□ 2.77
LSM6-203ENST00000503982 TECPR2O15040 1411 aa32.34■■■□□ 2.77
LSM6-203ENST00000503982 ABCC11Q96J66 1382 aa32.33■■■□□ 2.77
LSM6-203ENST00000503982 CFAP70Q5T0N1 1121 aa32.32■■■□□ 2.76
LSM6-203ENST00000503982 DHX57Q6P158 1386 aaKnown RBP32.32■■■□□ 2.76
LSM6-203ENST00000503982 C14orf93Q9H972 538 aaKnown RBP32.31■■■□□ 2.76
LSM6-203ENST00000503982 PNPLA6Q8IY17 1366 aa32.31■■■□□ 2.76
LSM6-203ENST00000503982 PLEKHH1Q9ULM0 1364 aa32.31■■■□□ 2.76
LSM6-203ENST00000503982 KDM2AQ9Y2K7 1162 aa32.3■■■□□ 2.76
LSM6-203ENST00000503982 NRXN1Q9ULB1 1477 aa32.27■■■□□ 2.76
LSM6-203ENST00000503982 HRCP23327 699 aa32.26■■■□□ 2.75
LSM6-203ENST00000503982 C8orf37Q96NL8 207 aa32.26■■■□□ 2.75
LSM6-203ENST00000503982 AFF2P51816 1311 aa32.25■■■□□ 2.75
LSM6-203ENST00000503982 DCAF11Q8TEB1 546 aa32.24■■■□□ 2.75
LSM6-203ENST00000503982 SOS2Q07890 1332 aaPredicted RBP32.24■■■□□ 2.75
LSM6-203ENST00000503982 NPHP3Q7Z494 1330 aa32.24■■■□□ 2.75
LSM6-203ENST00000503982 FMN2Q9NZ56 1722 aa32.23■■■□□ 2.75
LSM6-203ENST00000503982 SAFB2Q14151 953 aaKnown RBP eCLIP32.23■■■□□ 2.75
LSM6-203ENST00000503982 ADAMTS2O95450 1211 aa32.22■■■□□ 2.75
LSM6-203ENST00000503982 POGKQ9P215 609 aa32.21■■■□□ 2.75
LSM6-203ENST00000503982 FOXO3O43524 673 aa32.2■■■□□ 2.75
LSM6-203ENST00000503982 XPCQ01831 940 aaPredicted RBP32.2■■■□□ 2.75
LSM6-203ENST00000503982 SIRT1Q96EB6 747 aa32.19■■■□□ 2.74
LSM6-203ENST00000503982 PRAM1Q96QH2 718 aa32.18■■■□□ 2.74
LSM6-203ENST00000503982 RGPD8O14715 1765 aaPredicted RBP32.17■■■□□ 2.74
LSM6-203ENST00000503982 RXRBP28702 533 aa32.17■■■□□ 2.74
LSM6-203ENST00000503982 NGLY1Q96IV0 654 aa32.16■■■□□ 2.74
LSM6-203ENST00000503982 KIF1AQ12756 1690 aa32.15■■■□□ 2.74
LSM6-203ENST00000503982 TRAK1Q9UPV9 953 aa32.14■■■□□ 2.74
LSM6-203ENST00000503982 PXDNQ92626 1479 aa32.11■■■□□ 2.73
LSM6-203ENST00000503982 COL22A1Q8NFW1 1626 aaPredicted RBP32.11■■■□□ 2.73
LSM6-203ENST00000503982 DLC1Q96QB1 1528 aa32.1■■■□□ 2.73
LSM6-203ENST00000503982 STAC3Q96MF2 364 aa32.08■■■□□ 2.73
LSM6-203ENST00000503982 QTRT2Q9H974 415 aaKnown RBP32.08■■■□□ 2.73
LSM6-203ENST00000503982 ADGRB1O14514 1584 aa32.07■■■□□ 2.72
LSM6-203ENST00000503982 PHF8Q9UPP1 1060 aa32.06■■■□□ 2.72
LSM6-203ENST00000503982 KRT28Q7Z3Y7 464 aa32.04■■■□□ 2.72
LSM6-203ENST00000503982 HIRIP3Q9BW71 556 aaPredicted RBP32.04■■■□□ 2.72
LSM6-203ENST00000503982 MINK1Q8N4C8 1332 aaPredicted RBP32.03■■■□□ 2.72
LSM6-203ENST00000503982 MARF1Q9Y4F3 1742 aaKnown RBP32.03■■■□□ 2.72
LSM6-203ENST00000503982 USP21Q9UK80 565 aa32.02■■■□□ 2.72
LSM6-203ENST00000503982 PLEKHG5O94827 1062 aa32■■■□□ 2.71
LSM6-203ENST00000503982 RBM6P78332 1123 aaKnown RBP32■■■□□ 2.71
LSM6-203ENST00000503982 PSME1Q06323 249 aa32■■■□□ 2.71
LSM6-203ENST00000503982 HAP1P54257 671 aaPredicted RBP31.99■■■□□ 2.71
LSM6-203ENST00000503982 LMOD2Q6P5Q4 547 aa31.98■■■□□ 2.71
LSM6-203ENST00000503982 PMFBP1Q8TBY8 1022 aa31.98■■■□□ 2.71
LSM6-203ENST00000503982 ADGRB2O60241 1585 aa31.98■■■□□ 2.71
LSM6-203ENST00000503982 SPATA31A3Q5VYP0 1347 aa31.97■■■□□ 2.71
LSM6-203ENST00000503982 CDK12Q9NYV4 1490 aaPredicted RBP31.97■■■□□ 2.71
LSM6-203ENST00000503982 ARHGEF28Q8N1W1 1705 aaKnown RBP31.95■■■□□ 2.71
LSM6-203ENST00000503982 ANKARQ7Z5J8 1434 aa31.94■■■□□ 2.7
LSM6-203ENST00000503982 USP32Q8NFA0 1604 aa31.94■■■□□ 2.7
LSM6-203ENST00000503982 TRPC5Q9UL62 973 aaPredicted RBP31.94■■■□□ 2.7
LSM6-203ENST00000503982 EIF3AQ14152 1382 aaKnown RBP31.94■■■□□ 2.7
LSM6-203ENST00000503982 TNS3Q68CZ2 1445 aa31.92■■■□□ 2.7
LSM6-203ENST00000503982 RGS12O14924 1447 aa31.91■■■□□ 2.7
LSM6-203ENST00000503982 FNBP4Q8N3X1 1017 aaPredicted RBP31.9■■■□□ 2.7
LSM6-203ENST00000503982 WASLO00401 505 aaPredicted RBP31.89■■■□□ 2.7
LSM6-203ENST00000503982 KIAA1210Q9ULL0 1709 aa31.89■■■□□ 2.69
LSM6-203ENST00000503982 TULP4Q9NRJ4 1543 aa31.88■■■□□ 2.69
LSM6-203ENST00000503982 UPF1Q92900 1129 aaKnown RBP eCLIP31.87■■■□□ 2.69
LSM6-203ENST00000503982 SBNO1A3KN83 1393 aa31.85■■■□□ 2.69
LSM6-203ENST00000503982 GPRASP1Q5JY77 1395 aa31.84■■■□□ 2.69
LSM6-203ENST00000503982 CABLES1Q8TDN4 633 aa31.84■■■□□ 2.69
LSM6-203ENST00000503982 ATRNO75882 1429 aa31.83■■■□□ 2.69
LSM6-203ENST00000503982 ITSN1Q15811 1721 aa31.83■■■□□ 2.69
LSM6-203ENST00000503982 ARHGEF10O15013 1369 aa31.83■■■□□ 2.69
LSM6-203ENST00000503982 NGDNQ8NEJ9 315 aaKnown RBP31.83■■■□□ 2.69
LSM6-203ENST00000503982 PRR36Q9H6K5 1346 aa31.82■■■□□ 2.68
LSM6-203ENST00000503982 BCL9LQ86UU0 1499 aa31.79■■■□□ 2.68
LSM6-203ENST00000503982 ABCA3Q99758 1704 aa31.79■■■□□ 2.68
LSM6-203ENST00000503982 PAK3O75914 559 aaPredicted RBP31.78■■■□□ 2.68
LSM6-203ENST00000503982 NEUROD1Q13562 356 aa31.78■■■□□ 2.68
LSM6-203ENST00000503982 NBPF1Q3BBV0 1214 aa31.78■■■□□ 2.68
LSM6-203ENST00000503982 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.78■■■□□ 2.68
LSM6-203ENST00000503982 TRPM3Q9HCF6 1732 aaPredicted RBP31.78■■■□□ 2.68
LSM6-203ENST00000503982 UNC5CLQ8IV45 518 aa31.75■■■□□ 2.67
LSM6-203ENST00000503982 NUDT16Q96DE0 195 aaKnown RBP31.75■■■□□ 2.67
LSM6-203ENST00000503982 SIN3AQ96ST3 1273 aa31.75■■■□□ 2.67
LSM6-203ENST00000503982 CDK19Q9BWU1 502 aa31.75■■■□□ 2.67
LSM6-203ENST00000503982 PLCH1Q4KWH8 1693 aa31.74■■■□□ 2.67
LSM6-203ENST00000503982 GJD4Q96KN9 370 aaPredicted RBP31.74■■■□□ 2.67
LSM6-203ENST00000503982 L3MBTL2Q969R5 705 aa31.72■■■□□ 2.67
LSM6-203ENST00000503982 CCDC9Q9Y3X0 531 aaKnown RBP31.72■■■□□ 2.67
LSM6-203ENST00000503982 ATP7BP35670 1465 aa31.72■■■□□ 2.67
LSM6-203ENST00000503982 ATAD2Q6PL18 1390 aa31.71■■■□□ 2.67
LSM6-203ENST00000503982 SLIT2O94813 1529 aa31.71■■■□□ 2.67
LSM6-203ENST00000503982 ALS2Q96Q42 1657 aa31.71■■■□□ 2.67
LSM6-203ENST00000503982 NWD2Q9ULI1 1742 aa31.68■■■□□ 2.66
LSM6-203ENST00000503982 CENPJQ9HC77 1338 aaPredicted RBP31.68■■■□□ 2.66
LSM6-203ENST00000503982 QRICH2Q9H0J4 1663 aa31.67■■■□□ 2.66
LSM6-203ENST00000503982 SRPK2P78362 688 aaKnown RBP31.66■■■□□ 2.66
LSM6-203ENST00000503982 RALGAPBQ86X10 1494 aa31.65■■■□□ 2.66
LSM6-203ENST00000503982 TOPAZ1Q8N9V7 1692 aa31.64■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms