RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TULP4Q9NRJ4 1543 aa12.93□□□□□ -0.34
CLIP1-204ENST00000501271 MS4A1P11836 297 aa12.92□□□□□ -0.34
CLIP1-204ENST00000501271 DMRT2Q9Y5R5 561 aa12.92□□□□□ -0.34
CLIP1-204ENST00000501271 KDM2BQ8NHM5 1336 aa12.92□□□□□ -0.34
CLIP1-204ENST00000501271 BACH2Q9BYV9 841 aa12.92□□□□□ -0.34
CLIP1-204ENST00000501271 ARHGAP31Q2M1Z3 1444 aa12.9□□□□□ -0.34
CLIP1-204ENST00000501271 TNNT2P45379 298 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-204ENST00000501271 MORC1Q86VD1 984 aa12.9□□□□□ -0.34
CLIP1-204ENST00000501271 YEATS2Q9ULM3 1422 aa12.9□□□□□ -0.34
CLIP1-204ENST00000501271 E9PSI1 815 aa12.89□□□□□ -0.35
CLIP1-204ENST00000501271 NPM2Q86SE8 214 aaKnown RBP12.89□□□□□ -0.35
CLIP1-204ENST00000501271 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-204ENST00000501271 PREX1Q8TCU6 1659 aa12.89□□□□□ -0.35
CLIP1-204ENST00000501271 IQSEC2Q5JU85 1478 aa12.88□□□□□ -0.35
CLIP1-204ENST00000501271 VGFO15240 615 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-204ENST00000501271 BCAR3O75815 825 aa12.88□□□□□ -0.35
CLIP1-204ENST00000501271 ZBTB47Q9UFB7 747 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-204ENST00000501271 IDI1Q13907 227 aa12.87□□□□□ -0.35
CLIP1-204ENST00000501271 NGEFQ8N5V2 710 aa12.87□□□□□ -0.35
CLIP1-204ENST00000501271 TMEM131LA2VDJ0 1609 aa12.87□□□□□ -0.35
CLIP1-204ENST00000501271 EVC2Q86UK5 1308 aa12.87□□□□□ -0.35
CLIP1-204ENST00000501271 CENPQQ7L2Z9 268 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-204ENST00000501271 WWC1Q8IX03 1113 aa12.87□□□□□ -0.35
CLIP1-204ENST00000501271 ANKRD36BQ8N2N9 1353 aa12.86□□□□□ -0.35
CLIP1-204ENST00000501271 CGNL1Q0VF96 1302 aa12.86□□□□□ -0.35
CLIP1-204ENST00000501271 ZFYVE9O95405 1425 aa12.85□□□□□ -0.35
CLIP1-204ENST00000501271 MTHFSP49914 203 aa12.84□□□□□ -0.35
CLIP1-204ENST00000501271 NBR1Q14596 966 aa12.84□□□□□ -0.35
CLIP1-204ENST00000501271 CABP2Q9NPB3 220 aa12.84□□□□□ -0.35
CLIP1-204ENST00000501271 SAFB2Q14151 953 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP1-204ENST00000501271 PUS7Q96PZ0 661 aaKnown RBP12.84□□□□□ -0.35
CLIP1-204ENST00000501271 DNAJC5Q9H3Z4 198 aa12.84□□□□□ -0.35
CLIP1-204ENST00000501271 KCNA4P22459 653 aa12.83□□□□□ -0.35
CLIP1-204ENST00000501271 RUNDC1Q96C34 613 aa12.83□□□□□ -0.35
CLIP1-204ENST00000501271 RRP7AQ9Y3A4 280 aaKnown RBP12.83□□□□□ -0.35
CLIP1-204ENST00000501271 NEUROD2Q15784 382 aa12.83□□□□□ -0.36
CLIP1-204ENST00000501271 NSD2O96028 1365 aa12.83□□□□□ -0.36
CLIP1-204ENST00000501271 PTPRMP28827 1452 aa12.83□□□□□ -0.36
CLIP1-204ENST00000501271 TCP11L2Q8N4U5 519 aa12.82□□□□□ -0.36
CLIP1-204ENST00000501271 SLC52A1Q9NWF4 448 aa12.82□□□□□ -0.36
CLIP1-204ENST00000501271 STK26Q9P289 416 aa12.81□□□□□ -0.36
CLIP1-204ENST00000501271 A0A1W2PP64 1363 aa12.81□□□□□ -0.36
CLIP1-204ENST00000501271 CLTCQ00610 1675 aaKnown RBP12.81□□□□□ -0.36
CLIP1-204ENST00000501271 ADGRB2O60241 1585 aa12.8□□□□□ -0.36
CLIP1-204ENST00000501271 ANKRD26Q9UPS8 1709 aa12.8□□□□□ -0.36
CLIP1-204ENST00000501271 ABCC11Q96J66 1382 aa12.8□□□□□ -0.36
CLIP1-204ENST00000501271 CFAP53Q96M91 514 aa12.8□□□□□ -0.36
CLIP1-204ENST00000501271 NINLQ9Y2I6 1382 aa12.79□□□□□ -0.36
CLIP1-204ENST00000501271 PDE3AQ14432 1141 aa12.78□□□□□ -0.36
CLIP1-204ENST00000501271 FBXO31Q5XUX0 539 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-204ENST00000501271 YTHDC2Q9H6S0 1430 aaKnown RBP12.78□□□□□ -0.36
CLIP1-204ENST00000501271 SRPK2P78362 688 aaKnown RBP12.78□□□□□ -0.36
CLIP1-204ENST00000501271 C8orf34Q49A92 452 aa12.78□□□□□ -0.36
CLIP1-204ENST00000501271 PANK1Q8TE04 598 aa12.78□□□□□ -0.36
CLIP1-204ENST00000501271 ALKQ9UM73 1620 aa12.78□□□□□ -0.36
CLIP1-204ENST00000501271 CD163L1Q9NR16 1453 aa12.78□□□□□ -0.36
CLIP1-204ENST00000501271 VIRMAQ69YN4 1812 aaKnown RBP12.78□□□□□ -0.36
CLIP1-204ENST00000501271 TSPOAP1O95153 1857 aa12.77□□□□□ -0.36
CLIP1-204ENST00000501271 WDR63Q8IWG1 891 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 MINK1Q8N4C8 1332 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-204ENST00000501271 COL3A1P02461 1466 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-204ENST00000501271 IGHDP01880 384 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 CANXP27824 592 aaKnown RBP12.77□□□□□ -0.37
CLIP1-204ENST00000501271 RGS3P49796 1198 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 RARSP54136 660 aaKnown RBP12.77□□□□□ -0.37
CLIP1-204ENST00000501271 CCDC27Q2M243 656 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 PRAM1Q96QH2 718 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 COG6Q9Y2V7 657 aa12.77□□□□□ -0.37
CLIP1-204ENST00000501271 DIP2BQ9P265 1576 aa12.76□□□□□ -0.37
CLIP1-204ENST00000501271 U2AF1L5P0DN76 240 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-204ENST00000501271 U2AF1Q01081 240 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLIP1-204ENST00000501271 FAM161AQ3B820 660 aa12.76□□□□□ -0.37
CLIP1-204ENST00000501271 NLRP1Q9C000 1473 aa12.76□□□□□ -0.37
CLIP1-204ENST00000501271 CYB5RLQ6IPT4 315 aa12.76□□□□□ -0.37
CLIP1-204ENST00000501271 GGNBP2Q9H3C7 697 aa12.76□□□□□ -0.37
CLIP1-204ENST00000501271 ATAD2Q6PL18 1390 aa12.75□□□□□ -0.37
CLIP1-204ENST00000501271 DEKP35659 375 aaKnown RBP12.75□□□□□ -0.37
CLIP1-204ENST00000501271 FRAT1Q92837 279 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-204ENST00000501271 KIF20BQ96Q89 1820 aa12.75□□□□□ -0.37
CLIP1-204ENST00000501271 CLUAP1Q96AJ1 413 aa12.74□□□□□ -0.37
CLIP1-204ENST00000501271 PPP6R1Q9UPN7 881 aa12.74□□□□□ -0.37
CLIP1-204ENST00000501271 BCL2L13Q9BXK5 485 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 POGKQ9P215 609 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 TNNQ9UQP3 1299 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 SETD1AO15047 1707 aaKnown RBP12.73□□□□□ -0.37
CLIP1-204ENST00000501271 REREQ9P2R6 1566 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 ARHGEF40Q8TER5 1519 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 MED14O60244 1454 aa12.73□□□□□ -0.37
CLIP1-204ENST00000501271 RTN4Q9NQC3 1192 aaKnown RBP12.73□□□□□ -0.37
CLIP1-204ENST00000501271 LAS1LQ9Y4W2 734 aaKnown RBP12.73□□□□□ -0.37
CLIP1-204ENST00000501271 FYB1O15117 783 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 RLBP1P12271 317 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 DDRGK1Q96HY6 314 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 RIMBP3CA6NJZ7 1639 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 RIMBP3BA6NNM3 1639 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 RIMBP3Q9UFD9 1639 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 FAM69CQ0P6D2 419 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 NCBP3Q53F19 620 aaKnown RBP12.72□□□□□ -0.37
CLIP1-204ENST00000501271 BCL11AQ9H165 835 aa12.72□□□□□ -0.37
CLIP1-204ENST00000501271 PLEKHF1Q96S99 279 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms