RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 SYMPKQ92797 1274 aaKnown RBP13.1□□□□□ -0.31
SF3B1-212ENST00000496458 RIC3Q7Z5B4 369 aa13.09□□□□□ -0.31
SF3B1-212ENST00000496458 FAM160A2Q8N612 972 aaPredicted RBP13.09□□□□□ -0.31
SF3B1-212ENST00000496458 PLEKHG3A1L390 1219 aa13.08□□□□□ -0.32
SF3B1-212ENST00000496458 C6orf229H3BNL8 230 aa13.08□□□□□ -0.32
SF3B1-212ENST00000496458 SPTLC1O15269 473 aa13.08□□□□□ -0.32
SF3B1-212ENST00000496458 USB1Q9BQ65 265 aaKnown RBP13.08□□□□□ -0.32
SF3B1-212ENST00000496458 RSPH6AQ9H0K4 717 aa13.08□□□□□ -0.32
SF3B1-212ENST00000496458 PRDM9Q9NQV7 894 aa13.08□□□□□ -0.32
SF3B1-212ENST00000496458 RNF223E7ERA6 249 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 PPEF1O14829 653 aaPredicted RBP13.06□□□□□ -0.32
SF3B1-212ENST00000496458 GJA5P36382 358 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 CSPP1Q1MSJ5 1256 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 MSS51Q4VC12 460 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 LIMD1Q9UGP4 676 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 PCDHB15Q9Y5E8 787 aa13.06□□□□□ -0.32
SF3B1-212ENST00000496458 POLR3EQ9NVU0 708 aa13.05□□□□□ -0.32
SF3B1-212ENST00000496458 CLK2P49760 499 aaKnown RBP13.04□□□□□ -0.32
SF3B1-212ENST00000496458 MTMR2Q13614 643 aa13.03□□□□□ -0.32
SF3B1-212ENST00000496458 RETREG3Q86VR2 466 aa13.03□□□□□ -0.32
SF3B1-212ENST00000496458 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
SF3B1-212ENST00000496458 SH3D19Q5HYK7 790 aa13.02□□□□□ -0.33
SF3B1-212ENST00000496458 ANKLE1Q8NAG6 615 aa13.01□□□□□ -0.33
SF3B1-212ENST00000496458 CABLES1Q8TDN4 633 aa13□□□□□ -0.33
SF3B1-212ENST00000496458 ZBTB3Q9H5J0 574 aa13□□□□□ -0.33
SF3B1-212ENST00000496458 HRCP23327 699 aa12.99□□□□□ -0.33
SF3B1-212ENST00000496458 SPDYE5A6NIY4 337 aa12.98□□□□□ -0.33
SF3B1-212ENST00000496458 RGS20O76081 388 aa12.98□□□□□ -0.33
SF3B1-212ENST00000496458 MMP16P51512 607 aa12.98□□□□□ -0.33
SF3B1-212ENST00000496458 SKIV2LQ15477 1246 aaKnown RBP12.98□□□□□ -0.33
SF3B1-212ENST00000496458 QPCTQ16769 361 aa12.98□□□□□ -0.33
SF3B1-212ENST00000496458 ATP1B4Q9UN42 357 aaPredicted RBP12.98□□□□□ -0.33
SF3B1-212ENST00000496458 FCF1Q9Y324 198 aaKnown RBP12.98□□□□□ -0.33
SF3B1-212ENST00000496458 DXOO77932 396 aaKnown RBP12.97□□□□□ -0.33
SF3B1-212ENST00000496458 TUSC1Q2TAM9 212 aa12.97□□□□□ -0.33
SF3B1-212ENST00000496458 PRPF38BQ5VTL8 546 aaKnown RBP12.97□□□□□ -0.33
SF3B1-212ENST00000496458 PRR7Q8TB68 274 aa12.97□□□□□ -0.33
SF3B1-212ENST00000496458 JUNDP17535 347 aa12.96□□□□□ -0.33
SF3B1-212ENST00000496458 PRKD2Q9BZL6 878 aa12.96□□□□□ -0.33
SF3B1-212ENST00000496458 NUTM2BA6NNL0 878 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-212ENST00000496458 NUTM2EB1AL46 878 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-212ENST00000496458 PLA2G2CQ5R387 149 aa12.95□□□□□ -0.34
SF3B1-212ENST00000496458 NUTM2DQ5VT03 806 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-212ENST00000496458 NUTM2AQ8IVF1 878 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-212ENST00000496458 LILRB3O75022 631 aa12.94□□□□□ -0.34
SF3B1-212ENST00000496458 PROCA1Q8NCQ7 364 aaPredicted RBP12.94□□□□□ -0.34
SF3B1-212ENST00000496458 CFAP99D6REC4 459 aa12.93□□□□□ -0.34
SF3B1-212ENST00000496458 EMID1Q96A84 441 aaPredicted RBP12.91□□□□□ -0.34
SF3B1-212ENST00000496458 SLC19A1P41440 591 aa12.9□□□□□ -0.34
SF3B1-212ENST00000496458 RTL5Q5HYW3 569 aaPredicted RBP12.9□□□□□ -0.34
SF3B1-212ENST00000496458 CCDC24Q8N4L8 307 aa12.9□□□□□ -0.34
SF3B1-212ENST00000496458 TSC1Q92574 1164 aa12.9□□□□□ -0.34
SF3B1-212ENST00000496458 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.9□□□□□ -0.34
SF3B1-212ENST00000496458 LIAT1Q6ZQX7 453 aa12.89□□□□□ -0.35
SF3B1-212ENST00000496458 GOPCQ9HD26 462 aa12.89□□□□□ -0.35
SF3B1-212ENST00000496458 V9GY48 417 aaPredicted RBP12.89□□□□□ -0.35
SF3B1-212ENST00000496458 PCMTD1Q96MG8 357 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-212ENST00000496458 NUDT12Q9BQG2 462 aa12.88□□□□□ -0.35
SF3B1-212ENST00000496458 FBXO31Q5XUX0 539 aaPredicted RBP12.87□□□□□ -0.35
SF3B1-212ENST00000496458 DESI1Q6ICB0 168 aa12.87□□□□□ -0.35
SF3B1-212ENST00000496458 PTPRNQ16849 979 aa12.85□□□□□ -0.35
SF3B1-212ENST00000496458 CCNYL3P0C7X3 344 aa12.84□□□□□ -0.35
SF3B1-212ENST00000496458 ZBTB24O43167 697 aaPredicted RBP12.83□□□□□ -0.36
SF3B1-212ENST00000496458 SPRYD7Q5W111 196 aa12.83□□□□□ -0.36
SF3B1-212ENST00000496458 HELBQ8NG08 1087 aaPredicted RBP12.83□□□□□ -0.36
SF3B1-212ENST00000496458 RPIAP49247 311 aa12.82□□□□□ -0.36
SF3B1-212ENST00000496458 PPP2R2DQ66LE6 453 aa12.82□□□□□ -0.36
SF3B1-212ENST00000496458 PER1O15534 1290 aaPredicted RBP12.81□□□□□ -0.36
SF3B1-212ENST00000496458 LYPD8Q6UX82 237 aa12.81□□□□□ -0.36
SF3B1-212ENST00000496458 ZNF697Q5TEC3 545 aa12.79□□□□□ -0.36
SF3B1-212ENST00000496458 CTHP32929 405 aa12.78□□□□□ -0.36
SF3B1-212ENST00000496458 TRIM32Q13049 653 aa12.78□□□□□ -0.36
SF3B1-212ENST00000496458 PTCRAQ6ISU1 281 aaPredicted RBP12.78□□□□□ -0.36
SF3B1-212ENST00000496458 ZNF598Q86UK7 904 aaKnown RBP12.78□□□□□ -0.36
SF3B1-212ENST00000496458 EVA1BQ9NVM1 165 aa12.78□□□□□ -0.36
SF3B1-212ENST00000496458 CD2BP2O95400 341 aaKnown RBP12.77□□□□□ -0.37
SF3B1-212ENST00000496458 RFC5P40937 340 aa12.77□□□□□ -0.37
SF3B1-212ENST00000496458 CTDSPL2Q05D32 466 aa12.77□□□□□ -0.37
SF3B1-212ENST00000496458 AP1G2O75843 785 aa12.76□□□□□ -0.37
SF3B1-212ENST00000496458 KCNH2Q12809 1159 aa12.76□□□□□ -0.37
SF3B1-212ENST00000496458 MAP10Q9P2G4 905 aa12.76□□□□□ -0.37
SF3B1-212ENST00000496458 F12P00748 615 aaPredicted RBP12.74□□□□□ -0.37
SF3B1-212ENST00000496458 IRX2Q9BZI1 471 aaPredicted RBP12.74□□□□□ -0.37
SF3B1-212ENST00000496458 UNC93B1Q9H1C4 597 aa12.74□□□□□ -0.37
SF3B1-212ENST00000496458 LRRN4Q8WUT4 740 aa12.72□□□□□ -0.37
SF3B1-212ENST00000496458 FOXC1Q12948 553 aa12.7□□□□□ -0.38
SF3B1-212ENST00000496458 TRIM67Q6ZTA4 783 aa12.7□□□□□ -0.38
SF3B1-212ENST00000496458 TNFRSF10AO00220 468 aa12.69□□□□□ -0.38
SF3B1-212ENST00000496458 USP17L8P0C7I0 530 aa12.69□□□□□ -0.38
SF3B1-212ENST00000496458 LINC01559Q495D7 138 aa12.69□□□□□ -0.38
SF3B1-212ENST00000496458 PDZRN3Q9UPQ7 1066 aa12.69□□□□□ -0.38
SF3B1-212ENST00000496458 SKOR1P84550 965 aa12.68□□□□□ -0.38
SF3B1-212ENST00000496458 GDF9O60383 454 aa12.67□□□□□ -0.38
SF3B1-212ENST00000496458 GFRA3O60609 400 aa12.67□□□□□ -0.38
SF3B1-212ENST00000496458 TMEM259Q4ZIN3 620 aa12.67□□□□□ -0.38
SF3B1-212ENST00000496458 BAP1Q92560 729 aa12.67□□□□□ -0.38
SF3B1-212ENST00000496458 PKD2L1Q9P0L9 805 aa12.67□□□□□ -0.38
SF3B1-212ENST00000496458 WNT7BP56706 349 aa12.66□□□□□ -0.38
SF3B1-212ENST00000496458 SH3BP2P78314 561 aa12.64□□□□□ -0.39
SF3B1-212ENST00000496458 PRR20EP86478 221 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms