RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 WDR63Q8IWG1 891 aa12.28□□□□□ -0.44
SYNE1-230ENST00000495090 NAP1L5Q96NT1 182 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-230ENST00000495090 PCDHB15Q9Y5E8 787 aa12.28□□□□□ -0.44
SYNE1-230ENST00000495090 SHROOM2Q13796 1616 aa12.27□□□□□ -0.44
SYNE1-230ENST00000495090 CCDC27Q2M243 656 aa12.27□□□□□ -0.44
SYNE1-230ENST00000495090 DNAJC5BQ9UF47 199 aa12.27□□□□□ -0.44
SYNE1-230ENST00000495090 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.27□□□□□ -0.45
SYNE1-230ENST00000495090 MYO3AQ8NEV4 1616 aa12.27□□□□□ -0.45
SYNE1-230ENST00000495090 ERVK-7P63135 1459 aa12.27□□□□□ -0.45
SYNE1-230ENST00000495090 PKNOX2Q96KN3 472 aa12.27□□□□□ -0.45
SYNE1-230ENST00000495090 SBNO2Q9Y2G9 1366 aa12.26□□□□□ -0.45
SYNE1-230ENST00000495090 HSP90AA2PQ14568 343 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-230ENST00000495090 PANK2Q9BZ23 570 aa12.26□□□□□ -0.45
SYNE1-230ENST00000495090 CLTCL1P53675 1640 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 PTMSP20962 102 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 C22orf23Q9BZE7 217 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 MYH16Q9H6N6 1097 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 GRPEL1Q9HAV7 217 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 MYOM2P54296 1465 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 CT47B1P0C2W7 299 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-230ENST00000495090 DDIT3P35638 169 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 RUNDC1Q96C34 613 aa12.25□□□□□ -0.45
SYNE1-230ENST00000495090 ZNF692Q9BU19 519 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-230ENST00000495090 ESPNB1AK53 854 aa12.24□□□□□ -0.45
SYNE1-230ENST00000495090 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-230ENST00000495090 USP32Q8NFA0 1604 aa12.24□□□□□ -0.45
SYNE1-230ENST00000495090 ADGRL1O94910 1474 aa12.23□□□□□ -0.45
SYNE1-230ENST00000495090 RLBP1P12271 317 aa12.23□□□□□ -0.45
SYNE1-230ENST00000495090 MVPQ14764 893 aaKnown RBP12.23□□□□□ -0.45
SYNE1-230ENST00000495090 SNX21Q969T3 373 aa12.23□□□□□ -0.45
SYNE1-230ENST00000495090 DEPDC5O75140 1603 aa12.23□□□□□ -0.45
SYNE1-230ENST00000495090 HSCBQ8IWL3 235 aa12.23□□□□□ -0.45
SYNE1-230ENST00000495090 MAP3K4Q9Y6R4 1608 aa12.22□□□□□ -0.45
SYNE1-230ENST00000495090 TET3O43151 1660 aa12.22□□□□□ -0.45
SYNE1-230ENST00000495090 TPM2P07951 284 aa12.22□□□□□ -0.45
SYNE1-230ENST00000495090 HDAC1Q13547 482 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-230ENST00000495090 PLPPR3Q6T4P5 718 aa12.22□□□□□ -0.45
SYNE1-230ENST00000495090 CARD14Q9BXL6 1004 aa12.22□□□□□ -0.45
SYNE1-230ENST00000495090 SKOR2Q2VWA4 1001 aaPredicted RBP12.21□□□□□ -0.45
SYNE1-230ENST00000495090 RBM25P49756 843 aaKnown RBP12.21□□□□□ -0.46
SYNE1-230ENST00000495090 SMC5Q8IY18 1101 aa12.21□□□□□ -0.46
SYNE1-230ENST00000495090 GZF1Q9H116 711 aaPredicted RBP12.21□□□□□ -0.46
SYNE1-230ENST00000495090 ABCA6Q8N139 1617 aa12.2□□□□□ -0.46
SYNE1-230ENST00000495090 ABCC1P33527 1531 aa12.2□□□□□ -0.46
SYNE1-230ENST00000495090 ADGRB2O60241 1585 aa12.2□□□□□ -0.46
SYNE1-230ENST00000495090 ZNF518AQ6AHZ1 1483 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 ZKSCAN2Q63HK3 967 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 TCP11L2Q8N4U5 519 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 PPP6R1Q9UPN7 881 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 VWDEQ8N2E2 1590 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 GBP4Q96PP9 640 aa12.19□□□□□ -0.46
SYNE1-230ENST00000495090 MFAP1P55081 439 aaKnown RBP12.18□□□□□ -0.46
SYNE1-230ENST00000495090 DZIP1LQ8IYY4 767 aaKnown RBP12.18□□□□□ -0.46
SYNE1-230ENST00000495090 TRIM44Q96DX7 344 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-230ENST00000495090 IBTKQ9P2D0 1353 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-230ENST00000495090 PLCH2O75038 1416 aa12.18□□□□□ -0.46
SYNE1-230ENST00000495090 NRXN1Q9ULB1 1477 aa12.18□□□□□ -0.46
SYNE1-230ENST00000495090 SETBP1Q9Y6X0 1596 aa12.18□□□□□ -0.46
SYNE1-230ENST00000495090 ZMYND15Q9H091 742 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 ERBB4Q15303 1308 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 IFT172Q9UG01 1749 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 RAB3GAP1Q15042 981 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 VSIG10Q8N0Z9 540 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 ARXQ96QS3 562 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 TNNQ9UQP3 1299 aa12.17□□□□□ -0.46
SYNE1-230ENST00000495090 ADRA2BP18089 450 aa12.16□□□□□ -0.46
SYNE1-230ENST00000495090 FBLN2P98095 1184 aa12.16□□□□□ -0.46
SYNE1-230ENST00000495090 ARHGAP31Q2M1Z3 1444 aa12.16□□□□□ -0.46
SYNE1-230ENST00000495090 INO80Q9ULG1 1556 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-230ENST00000495090 DDX19BQ9UMR2 479 aa12.16□□□□□ -0.46
SYNE1-230ENST00000495090 NSD3Q9BZ95 1437 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 TERF1P54274 439 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 CCDC173Q0VFZ6 552 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 FTSJ3Q8IY81 847 aaKnown RBP12.15□□□□□ -0.46
SYNE1-230ENST00000495090 SPRYD3Q8NCJ5 442 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 PPP1R9BQ96SB3 815 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 ZC3H13Q5T200 1668 aaKnown RBP12.15□□□□□ -0.46
SYNE1-230ENST00000495090 ZFYVE16Q7Z3T8 1539 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 CLEC17AQ6ZS10 378 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 MORC1Q86VD1 984 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 TNPO1Q92973 898 aaKnown RBP12.15□□□□□ -0.46
SYNE1-230ENST00000495090 PDCL3Q9H2J4 239 aa12.15□□□□□ -0.46
SYNE1-230ENST00000495090 ARAP3Q8WWN8 1544 aa12.14□□□□□ -0.47
SYNE1-230ENST00000495090 NSD2O96028 1365 aa12.14□□□□□ -0.47
SYNE1-230ENST00000495090 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
SYNE1-230ENST00000495090 CFAP53Q96M91 514 aa12.14□□□□□ -0.47
SYNE1-230ENST00000495090 REREQ9P2R6 1566 aa12.13□□□□□ -0.47
SYNE1-230ENST00000495090 EFCAB2Q5VUJ9 269 aa12.13□□□□□ -0.47
SYNE1-230ENST00000495090 BCL2L13Q9BXK5 485 aa12.13□□□□□ -0.47
SYNE1-230ENST00000495090 GAS2L3Q86XJ1 694 aa12.12□□□□□ -0.47
SYNE1-230ENST00000495090 RRP7AQ9Y3A4 280 aaKnown RBP12.12□□□□□ -0.47
SYNE1-230ENST00000495090 TRAPPC8Q9Y2L5 1435 aa12.12□□□□□ -0.47
SYNE1-230ENST00000495090 CFAP74Q9C0B2 1584 aa12.12□□□□□ -0.47
SYNE1-230ENST00000495090 ABCC11Q96J66 1382 aa12.12□□□□□ -0.47
SYNE1-230ENST00000495090 KIF1BO60333 1816 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 NEUROD2Q15784 382 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 PUS7Q96PZ0 661 aaKnown RBP12.11□□□□□ -0.47
SYNE1-230ENST00000495090 IL16Q14005 1332 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 TRIM27P14373 513 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 NUCB1Q02818 461 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms