RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 AVPP01185 164 aa11.44□□□□□ -0.58
VPS50-219ENST00000495039 IRF6O14896 467 aa11.43□□□□□ -0.58
VPS50-219ENST00000495039 KDM4AO75164 1064 aa11.43□□□□□ -0.58
VPS50-219ENST00000495039 MMP16P51512 607 aa11.43□□□□□ -0.58
VPS50-219ENST00000495039 TTC24A2A3L6 582 aaPredicted RBP11.41□□□□□ -0.58
VPS50-219ENST00000495039 USP46P62068 366 aa11.41□□□□□ -0.58
VPS50-219ENST00000495039 CTC1Q2NKJ3 1217 aa11.41□□□□□ -0.58
VPS50-219ENST00000495039 USB1Q9BQ65 265 aaKnown RBP11.41□□□□□ -0.58
VPS50-219ENST00000495039 MINK1Q8N4C8 1332 aaPredicted RBP11.4□□□□□ -0.58
VPS50-219ENST00000495039 AXIN1O15169 862 aa11.4□□□□□ -0.58
VPS50-219ENST00000495039 MDM2Q00987 491 aaPredicted RBP11.4□□□□□ -0.58
VPS50-219ENST00000495039 TRIM32Q13049 653 aa11.4□□□□□ -0.58
VPS50-219ENST00000495039 WNT7AO00755 349 aa11.39□□□□□ -0.59
VPS50-219ENST00000495039 DXOO77932 396 aaKnown RBP11.38□□□□□ -0.59
VPS50-219ENST00000495039 SMCPP49901 116 aaPredicted RBP11.37□□□□□ -0.59
VPS50-219ENST00000495039 HOXA2O43364 376 aa11.36□□□□□ -0.59
VPS50-219ENST00000495039 SNIP1Q8TAD8 396 aaKnown RBP11.36□□□□□ -0.59
VPS50-219ENST00000495039 CCDC102AQ96A19 550 aa11.36□□□□□ -0.59
VPS50-219ENST00000495039 DACH1Q9UI36 760 aa11.36□□□□□ -0.59
VPS50-219ENST00000495039 VSIG10Q8N0Z9 540 aa11.34□□□□□ -0.59
VPS50-219ENST00000495039 HLA-CQ95604 372 aa11.34□□□□□ -0.59
VPS50-219ENST00000495039 REPIN1Q9BWE0 567 aaKnown RBP11.34□□□□□ -0.59
VPS50-219ENST00000495039 GPCPD1Q9NPB8 672 aa11.34□□□□□ -0.59
VPS50-219ENST00000495039 CLCN1P35523 988 aa11.33□□□□□ -0.6
VPS50-219ENST00000495039 TREML4Q6UXN2 200 aa11.33□□□□□ -0.6
VPS50-219ENST00000495039 GMPR2Q9P2T1 348 aaKnown RBP11.33□□□□□ -0.6
VPS50-219ENST00000495039 SMPD1P17405 629 aa11.32□□□□□ -0.6
VPS50-219ENST00000495039 CCDC24Q8N4L8 307 aa11.32□□□□□ -0.6
VPS50-219ENST00000495039 MRGPRX2Q96LB1 330 aa11.32□□□□□ -0.6
VPS50-219ENST00000495039 C11orf95C9JLR9 678 aaPredicted RBP11.31□□□□□ -0.6
VPS50-219ENST00000495039 FAM217BQ9NTX9 383 aaPredicted RBP11.3□□□□□ -0.6
VPS50-219ENST00000495039 KRI1Q8N9T8 703 aaKnown RBP11.29□□□□□ -0.6
VPS50-219ENST00000495039 JUNDP17535 347 aa11.28□□□□□ -0.6
VPS50-219ENST00000495039 WNT7BP56706 349 aa11.28□□□□□ -0.6
VPS50-219ENST00000495039 GUCA2AQ02747 115 aa11.28□□□□□ -0.6
VPS50-219ENST00000495039 NUTM1Q86Y26 1132 aa11.28□□□□□ -0.6
VPS50-219ENST00000495039 J3QL48 77 aa11.27□□□□□ -0.61
VPS50-219ENST00000495039 LCE2AQ5TA79 106 aaPredicted RBP11.27□□□□□ -0.61
VPS50-219ENST00000495039 RC3H1Q5TC82 1133 aaKnown RBP11.26□□□□□ -0.61
VPS50-219ENST00000495039 RETREG3Q86VR2 466 aa11.25□□□□□ -0.61
VPS50-219ENST00000495039 ATP13A2Q9NQ11 1180 aa11.25□□□□□ -0.61
VPS50-219ENST00000495039 SKOR1P84550 965 aa11.24□□□□□ -0.61
VPS50-219ENST00000495039 SYMPKQ92797 1274 aaKnown RBP11.24□□□□□ -0.61
VPS50-219ENST00000495039 WFS1O76024 890 aa11.23□□□□□ -0.61
VPS50-219ENST00000495039 HPS1Q92902 700 aa11.22□□□□□ -0.61
VPS50-219ENST00000495039 NUDT12Q9BQG2 462 aa11.22□□□□□ -0.61
VPS50-219ENST00000495039 SENP2Q9HC62 589 aa11.22□□□□□ -0.61
VPS50-219ENST00000495039 FDX1P10109 184 aa11.2□□□□□ -0.62
VPS50-219ENST00000495039 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS50-219ENST00000495039 C6orf229H3BNL8 230 aa11.19□□□□□ -0.62
VPS50-219ENST00000495039 TRIM47Q96LD4 638 aa11.19□□□□□ -0.62
VPS50-219ENST00000495039 ALDH1A1P00352 501 aa11.18□□□□□ -0.62
VPS50-219ENST00000495039 MS4A1P11836 297 aa11.17□□□□□ -0.62
VPS50-219ENST00000495039 NFX1Q12986 1120 aaKnown RBP11.17□□□□□ -0.62
VPS50-219ENST00000495039 EHBP1Q8NDI1 1231 aa11.17□□□□□ -0.62
VPS50-219ENST00000495039 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
VPS50-219ENST00000495039 PCDHGC3Q9UN70 934 aa11.17□□□□□ -0.62
VPS50-219ENST00000495039 SNRPBP14678 240 aaKnown RBP11.16□□□□□ -0.62
VPS50-219ENST00000495039 SSTR3P32745 418 aaPredicted RBP11.16□□□□□ -0.62
VPS50-219ENST00000495039 PTCRAQ6ISU1 281 aaPredicted RBP11.16□□□□□ -0.62
VPS50-219ENST00000495039 CCNYL3P0C7X3 344 aa11.15□□□□□ -0.62
VPS50-219ENST00000495039 TTLL12Q14166 644 aaPredicted RBP11.15□□□□□ -0.62
VPS50-219ENST00000495039 SPIRE2Q8WWL2 714 aa11.14□□□□□ -0.63
VPS50-219ENST00000495039 PTPRNQ16849 979 aa11.13□□□□□ -0.63
VPS50-219ENST00000495039 SIAH2O43255 324 aa11.12□□□□□ -0.63
VPS50-219ENST00000495039 WASF2Q9Y6W5 498 aa11.12□□□□□ -0.63
VPS50-219ENST00000495039 TERTO14746 1132 aaKnown RBP11.11□□□□□ -0.63
VPS50-219ENST00000495039 WIPF1O43516 503 aa11.11□□□□□ -0.63
VPS50-219ENST00000495039 SH3BP2P78314 561 aa11.11□□□□□ -0.63
VPS50-219ENST00000495039 BARGINQ6ZT62 677 aa11.11□□□□□ -0.63
VPS50-219ENST00000495039 MOXD2PA6NHM9 499 aa11.1□□□□□ -0.63
VPS50-219ENST00000495039 NDUFV2P19404 249 aa11.1□□□□□ -0.63
VPS50-219ENST00000495039 AMHR2Q16671 573 aa11.1□□□□□ -0.63
VPS50-219ENST00000495039 UNC93B1Q9H1C4 597 aa11.1□□□□□ -0.63
VPS50-219ENST00000495039 EVA1BQ9NVM1 165 aa11.09□□□□□ -0.63
VPS50-219ENST00000495039 SPDYE5A6NIY4 337 aa11.08□□□□□ -0.64
VPS50-219ENST00000495039 ZMYND10O75800 440 aa11.08□□□□□ -0.64
VPS50-219ENST00000495039 INSM1Q01101 510 aaPredicted RBP11.08□□□□□ -0.64
VPS50-219ENST00000495039 MTMR2Q13614 643 aa11.08□□□□□ -0.64
VPS50-219ENST00000495039 GIGYF2Q6Y7W6 1299 aaKnown RBP11.08□□□□□ -0.64
VPS50-219ENST00000495039 PRR7Q8TB68 274 aa11.08□□□□□ -0.64
VPS50-219ENST00000495039 KCNH2Q12809 1159 aa11.07□□□□□ -0.64
VPS50-219ENST00000495039 DESI1Q6ICB0 168 aa11.07□□□□□ -0.64
VPS50-219ENST00000495039 CAPN5O15484 640 aaPredicted RBP11.06□□□□□ -0.64
VPS50-219ENST00000495039 STK17AQ9UEE5 414 aa11.06□□□□□ -0.64
VPS50-219ENST00000495039 LINC01559Q495D7 138 aa11.05□□□□□ -0.64
VPS50-219ENST00000495039 GJA5P36382 358 aa11.04□□□□□ -0.64
VPS50-219ENST00000495039 DIXDC1Q155Q3 683 aa11.04□□□□□ -0.64
VPS50-219ENST00000495039 ZNF511Q8NB15 262 aa11.04□□□□□ -0.64
VPS50-219ENST00000495039 BAP1Q92560 729 aa11.04□□□□□ -0.64
VPS50-219ENST00000495039 BEGAINQ9BUH8 593 aa11.04□□□□□ -0.64
VPS50-219ENST00000495039 BMP1P13497 986 aa11.03□□□□□ -0.64
VPS50-219ENST00000495039 ZC3H15Q8WU90 426 aaKnown RBP11.03□□□□□ -0.64
VPS50-219ENST00000495039 PLEKHG3A1L390 1219 aa11.02□□□□□ -0.65
VPS50-219ENST00000495039 VARSP26640 1264 aaKnown RBP11.02□□□□□ -0.65
VPS50-219ENST00000495039 TRIM46Q7Z4K8 759 aa11.02□□□□□ -0.65
VPS50-219ENST00000495039 SLC16A10Q8TF71 515 aa11.02□□□□□ -0.65
VPS50-219ENST00000495039 TLL2Q9Y6L7 1015 aa11.02□□□□□ -0.65
VPS50-219ENST00000495039 LCE2CQ5TA81 110 aa11.01□□□□□ -0.65
VPS50-219ENST00000495039 TBC1D2Q9BYX2 928 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms