RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 KIF1BO60333 1816 aa19.66■□□□□ 0.74
SDF4-207ENST00000494748 UGGT1Q9NYU2 1555 aa19.66■□□□□ 0.74
SDF4-207ENST00000494748 ZCCHC11Q5TAX3 1644 aaKnown RBP19.65■□□□□ 0.74
SDF4-207ENST00000494748 MROH1Q8NDA8 1641 aa19.65■□□□□ 0.74
SDF4-207ENST00000494748 PMFBP1Q8TBY8 1022 aa19.65■□□□□ 0.74
SDF4-207ENST00000494748 L1TD1Q5T7N2 865 aaKnown RBP19.64■□□□□ 0.74
SDF4-207ENST00000494748 NRXN1Q9ULB1 1477 aa19.64■□□□□ 0.73
SDF4-207ENST00000494748 XRCC6P12956 609 aaKnown RBP eCLIP19.64■□□□□ 0.73
SDF4-207ENST00000494748 AAMPQ13685 434 aa19.64■□□□□ 0.73
SDF4-207ENST00000494748 KANK1Q14678 1352 aa19.63■□□□□ 0.73
SDF4-207ENST00000494748 INO80Q9ULG1 1556 aaPredicted RBP19.63■□□□□ 0.73
SDF4-207ENST00000494748 ADGRB2O60241 1585 aa19.62■□□□□ 0.73
SDF4-207ENST00000494748 SBNO2Q9Y2G9 1366 aa19.62■□□□□ 0.73
SDF4-207ENST00000494748 CANXP27824 592 aaKnown RBP19.61■□□□□ 0.73
SDF4-207ENST00000494748 QRICH2Q9H0J4 1663 aa19.61■□□□□ 0.73
SDF4-207ENST00000494748 CFAP70Q5T0N1 1121 aa19.61■□□□□ 0.73
SDF4-207ENST00000494748 ZNF518AQ6AHZ1 1483 aa19.6■□□□□ 0.73
SDF4-207ENST00000494748 RRP7AQ9Y3A4 280 aaKnown RBP19.59■□□□□ 0.73
SDF4-207ENST00000494748 ADGRF5Q8IZF2 1346 aa19.59■□□□□ 0.73
SDF4-207ENST00000494748 MCM4P33991 863 aa19.59■□□□□ 0.73
SDF4-207ENST00000494748 SETBP1Q9Y6X0 1596 aa19.59■□□□□ 0.73
SDF4-207ENST00000494748 RUNDC1Q96C34 613 aa19.58■□□□□ 0.73
SDF4-207ENST00000494748 PANK2Q9BZ23 570 aa19.58■□□□□ 0.73
SDF4-207ENST00000494748 NSD3Q9BZ95 1437 aa19.58■□□□□ 0.72
SDF4-207ENST00000494748 WDR63Q8IWG1 891 aa19.58■□□□□ 0.72
SDF4-207ENST00000494748 TCP11L2Q8N4U5 519 aa19.58■□□□□ 0.72
SDF4-207ENST00000494748 ZNF692Q9BU19 519 aaPredicted RBP19.57■□□□□ 0.72
SDF4-207ENST00000494748 BCL2L13Q9BXK5 485 aa19.56■□□□□ 0.72
SDF4-207ENST00000494748 NCOA3Q9Y6Q9 1424 aa19.56■□□□□ 0.72
SDF4-207ENST00000494748 CCDC27Q2M243 656 aa19.56■□□□□ 0.72
SDF4-207ENST00000494748 UPF2Q9HAU5 1272 aaKnown RBP19.55■□□□□ 0.72
SDF4-207ENST00000494748 ARAP3Q8WWN8 1544 aa19.55■□□□□ 0.72
SDF4-207ENST00000494748 NEUROD2Q15784 382 aa19.54■□□□□ 0.72
SDF4-207ENST00000494748 EFCAB2Q5VUJ9 269 aa19.54■□□□□ 0.72
SDF4-207ENST00000494748 MVPQ14764 893 aaKnown RBP19.54■□□□□ 0.72
SDF4-207ENST00000494748 PPLO60437 1756 aa19.54■□□□□ 0.72
SDF4-207ENST00000494748 PPRC1Q5VV67 1664 aaKnown RBP19.53■□□□□ 0.72
SDF4-207ENST00000494748 GOLGA6L3A6NEY3 463 aa19.53■□□□□ 0.72
SDF4-207ENST00000494748 DDIT3P35638 169 aa19.53■□□□□ 0.72
SDF4-207ENST00000494748 RWDD1Q9H446 243 aaPredicted RBP19.53■□□□□ 0.72
SDF4-207ENST00000494748 ATP7AQ04656 1500 aa19.53■□□□□ 0.72
SDF4-207ENST00000494748 EFCAB6Q5THR3 1501 aa19.53■□□□□ 0.72
SDF4-207ENST00000494748 SLC24A1O60721 1099 aa19.52■□□□□ 0.72
SDF4-207ENST00000494748 SPRYD3Q8NCJ5 442 aa19.52■□□□□ 0.72
SDF4-207ENST00000494748 SPAG9O60271 1321 aaKnown RBP19.52■□□□□ 0.72
SDF4-207ENST00000494748 ADGRB1O14514 1584 aa19.52■□□□□ 0.72
SDF4-207ENST00000494748 ADGRB3O60242 1522 aa19.51■□□□□ 0.71
SDF4-207ENST00000494748 CLCN1P35523 988 aa19.51■□□□□ 0.71
SDF4-207ENST00000494748 ADGRL1O94910 1474 aa19.51■□□□□ 0.71
SDF4-207ENST00000494748 AFAP1Q8N556 730 aa19.51■□□□□ 0.71
SDF4-207ENST00000494748 C22orf23Q9BZE7 217 aa19.5■□□□□ 0.71
SDF4-207ENST00000494748 CHMP5Q9NZZ3 219 aa19.5■□□□□ 0.71
SDF4-207ENST00000494748 ABCA9Q8IUA7 1624 aa19.49■□□□□ 0.71
SDF4-207ENST00000494748 NCBP3Q53F19 620 aaKnown RBP19.49■□□□□ 0.71
SDF4-207ENST00000494748 TRAK2O60296 914 aa19.49■□□□□ 0.71
SDF4-207ENST00000494748 MORC1Q86VD1 984 aa19.48■□□□□ 0.71
SDF4-207ENST00000494748 GZF1Q9H116 711 aaPredicted RBP19.48■□□□□ 0.71
SDF4-207ENST00000494748 ARXQ96QS3 562 aa19.47■□□□□ 0.71
SDF4-207ENST00000494748 TNNT2P45379 298 aaPredicted RBP19.47■□□□□ 0.71
SDF4-207ENST00000494748 UHRF1BP1LA0JNW5 1464 aa19.47■□□□□ 0.71
SDF4-207ENST00000494748 HDAC1Q13547 482 aaPredicted RBP19.46■□□□□ 0.71
SDF4-207ENST00000494748 SLC12A5Q9H2X9 1139 aa19.46■□□□□ 0.71
SDF4-207ENST00000494748 MTHFSP49914 203 aa19.46■□□□□ 0.71
SDF4-207ENST00000494748 CD109Q6YHK3 1445 aa19.45■□□□□ 0.7
SDF4-207ENST00000494748 MFAP1P55081 439 aaKnown RBP19.45■□□□□ 0.7
SDF4-207ENST00000494748 ZKSCAN2Q63HK3 967 aa19.44■□□□□ 0.7
SDF4-207ENST00000494748 DZIP1LQ8IYY4 767 aaKnown RBP19.44■□□□□ 0.7
SDF4-207ENST00000494748 NOS1P29475 1434 aa19.44■□□□□ 0.7
SDF4-207ENST00000494748 ARHGEF28Q8N1W1 1705 aaKnown RBP19.44■□□□□ 0.7
SDF4-207ENST00000494748 ERBB4Q15303 1308 aa19.44■□□□□ 0.7
SDF4-207ENST00000494748 MRE11P49959 708 aa19.43■□□□□ 0.7
SDF4-207ENST00000494748 SMC5Q8IY18 1101 aa19.43■□□□□ 0.7
SDF4-207ENST00000494748 TULP4Q9NRJ4 1543 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 TRIM27P14373 513 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 MYH16Q9H6N6 1097 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 COL3A1P02461 1466 aaPredicted RBP19.42■□□□□ 0.7
SDF4-207ENST00000494748 LMTK2Q8IWU2 1503 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 CFAP74Q9C0B2 1584 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 FANCAO15360 1455 aa19.42■□□□□ 0.7
SDF4-207ENST00000494748 RBM25P49756 843 aaKnown RBP19.41■□□□□ 0.7
SDF4-207ENST00000494748 GRPEL1Q9HAV7 217 aa19.41■□□□□ 0.7
SDF4-207ENST00000494748 KIDINS220Q9ULH0 1771 aa19.4■□□□□ 0.7
SDF4-207ENST00000494748 TSR2Q969E8 191 aaKnown RBP19.4■□□□□ 0.7
SDF4-207ENST00000494748 CT47B1P0C2W7 299 aaPredicted RBP19.39■□□□□ 0.7
SDF4-207ENST00000494748 PNNQ9H307 717 aaKnown RBP19.39■□□□□ 0.7
SDF4-207ENST00000494748 ANKRD26Q9UPS8 1709 aa19.39■□□□□ 0.69
SDF4-207ENST00000494748 PLEKHF1Q96S99 279 aa19.39■□□□□ 0.69
SDF4-207ENST00000494748 GLI2P10070 1586 aa19.38■□□□□ 0.69
SDF4-207ENST00000494748 SNX21Q969T3 373 aa19.38■□□□□ 0.69
SDF4-207ENST00000494748 DDX11L8A8MPP1 907 aa19.38■□□□□ 0.69
SDF4-207ENST00000494748 GAS2L3Q86XJ1 694 aa19.38■□□□□ 0.69
SDF4-207ENST00000494748 KIF3BO15066 747 aa19.37■□□□□ 0.69
SDF4-207ENST00000494748 SSH1Q8WYL5 1049 aa19.37■□□□□ 0.69
SDF4-207ENST00000494748 KIF2CQ99661 725 aa19.37■□□□□ 0.69
SDF4-207ENST00000494748 FTSJ3Q8IY81 847 aaKnown RBP19.37■□□□□ 0.69
SDF4-207ENST00000494748 TRIM35Q9UPQ4 493 aa19.37■□□□□ 0.69
SDF4-207ENST00000494748 CFAP65Q6ZU64 1925 aaKnown RBP19.37■□□□□ 0.69
SDF4-207ENST00000494748 EXOSC9Q06265 439 aaKnown RBP19.36■□□□□ 0.69
SDF4-207ENST00000494748 ZBTB40Q9NUA8 1239 aa19.36■□□□□ 0.69
SDF4-207ENST00000494748 TRAK1Q9UPV9 953 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms