RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, human

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MDC1-208	ENST00000494654	HSP90AA2P	Q14568	343 aa	Predicted RBP	3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	FRAT1	Q92837	279 aa	Predicted RBP	3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	NUDC	Q9Y266	331 aa		3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	LAS1L	Q9Y4W2	734 aa	Known RBP	3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	ROCK2	O75116	1388 aa	Known RBP	3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	TDRD9	Q8NDG6	1382 aa	Known RBP	3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	MYOM3	Q5VTT5	1437 aa		3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	MIA2	Q96PC5	1412 aa		3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	NLRP1	Q9C000	1473 aa		3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	UGGT2	Q9NYU1	1516 aa		3.6	□□□□□ -1.83
MDC1-208	ENST00000494654	ERCC6L2	Q5T890	1561 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	HSP90AA1	P07900	732 aa	Known RBP	3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	CLCN1	P35523	988 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	PTGER2	P43116	358 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	FGD1	P98174	961 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	NFKBIB	Q15653	356 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	PROX2	Q3B8N5	592 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	L1TD1	Q5T7N2	865 aa	Known RBP	3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	ZNF687	Q8N1G0	1237 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	KCNK17	Q96T54	332 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	FAM198A	Q9UFP1	575 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	PHLDB1	Q86UU1	1377 aa		3.59	□□□□□ -1.83
MDC1-208	ENST00000494654	TCOF1	Q13428	1488 aa	Known RBP	3.59	□□□□□ -1.84
MDC1-208	ENST00000494654	IFT140	Q96RY7	1462 aa		3.59	□□□□□ -1.84
MDC1-208	ENST00000494654	RAD54L2	Q9Y4B4	1467 aa		3.59	□□□□□ -1.84
MDC1-208	ENST00000494654	TSPOAP1	O95153	1857 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	SPDYE16	A6NNV3	312 aa	Predicted RBP	3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	PHF14	O94880	888 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	TPM2	P07951	284 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	FECH	P22830	423 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	FAM161A	Q3B820	660 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	P3H3	Q8IVL6	736 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	CHMP7	Q8WUX9	453 aa	Predicted RBP	3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	ZDHHC16	Q969W1	377 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	JPH4	Q96JJ6	628 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	BACH2	Q9BYV9	841 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	RRAGD	Q9NQL2	400 aa	Predicted RBP	3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	NPDC1	Q9NQX5	325 aa	Predicted RBP	3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	CCDC7	Q96M83	1385 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	FMN1	Q68DA7	1419 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	FGD6	Q6ZV73	1430 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	DENND4B	O75064	1496 aa	Predicted RBP	3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	SNAPC4	Q5SXM2	1469 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	TOPBP1	Q92547	1522 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	MYOM1	P52179	1685 aa		3.58	□□□□□ -1.84
MDC1-208	ENST00000494654	GPR37	O15354	613 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	MAP3K7	O43318	606 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	INSR	P06213	1382 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	CFTR	P13569	1480 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	RBM10	P98175	930 aa	Known RBP	3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	EN1	Q05925	392 aa	Predicted RBP	3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	PDE4C	Q08493	712 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	GAPVD1	Q14C86	1478 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	C6orf132	Q5T0Z8	1188 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	ZC3H13	Q5T200	1668 aa	Known RBP	3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	PPRC1	Q5VV67	1664 aa	Known RBP	3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	KTN1	Q86UP2	1357 aa	Known RBP	3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	FAM135A	Q9P2D6	1515 aa		3.57	□□□□□ -1.84
MDC1-208	ENST00000494654	KIF13A	Q9H1H9	1805 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	CEP152	O94986	1710 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	IQGAP1	P46940	1657 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	ADCY10	Q96PN6	1610 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	EIF2AK4	Q9P2K8	1649 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	EPRS	P07814	1512 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	ABCC2	Q92887	1545 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	ARHGEF12	Q9NZN5	1544 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	RPRD2	Q5VT52	1461 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	FGD5	Q6ZNL6	1462 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	BLM	P54132	1417 aa	Predicted RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	NAIP	Q13075	1403 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	LRPPRC	P42704	1394 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	PDIA4	P13667	645 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	FAM69C	Q0P6D2	419 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	PPP4R3B	Q5MIZ7	849 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	KANK4	Q5T7N3	995 aa	Predicted RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	TYW1B	Q6NUM6	668 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	ANKRD13D	Q6ZTN6	518 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	DCAF11	Q8TEB1	546 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	NAP1L5	Q96NT1	182 aa	Predicted RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	PNN	Q9H307	717 aa	Known RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	PRKRIP1	Q9H875	184 aa	Predicted RBP	3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	BCL2L12	Q9HB09	334 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	PRDM4	Q9UKN5	801 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	TUBGCP6	Q96RT7	1819 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	CDC42BPA	Q5VT25	1732 aa		3.56	□□□□□ -1.84
MDC1-208	ENST00000494654	RALGAPB	Q86X10	1494 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	SPATA31E1	Q6ZUB1	1445 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	KIF27	Q86VH2	1401 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	CASKIN1	Q8WXD9	1431 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	ZMYM3	Q14202	1370 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	DHX29	Q7Z478	1369 aa	Known RBP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	NUTM2F	A1L443	756 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	SMAP	O00193	183 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	RRP1	P56182	461 aa	Known RBP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	LSM11	P83369	360 aa	Known RBP eCLIP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	NPM2	Q86SE8	214 aa	Known RBP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	SMAP1	Q8IYB5	467 aa	Predicted RBP	3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	NLRP7	Q8WX94	980 aa		3.55	□□□□□ -1.84
MDC1-208	ENST00000494654	MAP7D2	Q96T17	732 aa		3.55	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms