RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 NPC1L1Q9UHC9 1359 aa9.37□□□□□ -0.91
MSH5-217ENST00000494458 FER1L4A9Z1Z3 1794 aa9.37□□□□□ -0.91
MSH5-217ENST00000494458 CEBPAP49715 358 aaPredicted RBP9.37□□□□□ -0.91
MSH5-217ENST00000494458 PLEKHG1Q9ULL1 1385 aa9.37□□□□□ -0.91
MSH5-217ENST00000494458 MYCNP04198 464 aaPredicted RBP9.36□□□□□ -0.91
MSH5-217ENST00000494458 LTKP29376 864 aa9.36□□□□□ -0.91
MSH5-217ENST00000494458 FXR2P51116 673 aaKnown RBP eCLIP9.36□□□□□ -0.91
MSH5-217ENST00000494458 STAG3Q9UJ98 1225 aa9.36□□□□□ -0.91
MSH5-217ENST00000494458 ADAMTS13Q76LX8 1427 aa9.36□□□□□ -0.91
MSH5-217ENST00000494458 ARHGEF28Q8N1W1 1705 aaKnown RBP9.36□□□□□ -0.91
MSH5-217ENST00000494458 RALBP1Q15311 655 aa9.35□□□□□ -0.91
MSH5-217ENST00000494458 NUTM2DQ5VT03 806 aaPredicted RBP9.35□□□□□ -0.91
MSH5-217ENST00000494458 TRAK1Q9UPV9 953 aa9.35□□□□□ -0.91
MSH5-217ENST00000494458 PARD3Q8TEW0 1356 aa9.35□□□□□ -0.91
MSH5-217ENST00000494458 FAM135BQ49AJ0 1406 aa9.34□□□□□ -0.91
MSH5-217ENST00000494458 THEMISQ8N1K5 641 aaPredicted RBP9.34□□□□□ -0.91
MSH5-217ENST00000494458 PANK3Q9H999 370 aa9.34□□□□□ -0.91
MSH5-217ENST00000494458 MYOM1P52179 1685 aa9.33□□□□□ -0.92
MSH5-217ENST00000494458 EVX2Q03828 476 aa9.33□□□□□ -0.92
MSH5-217ENST00000494458 AMER1Q5JTC6 1135 aaPredicted RBP9.33□□□□□ -0.92
MSH5-217ENST00000494458 TBX22Q9Y458 520 aa9.33□□□□□ -0.92
MSH5-217ENST00000494458 SETD1BQ9UPS6 1966 aaKnown RBP9.33□□□□□ -0.92
MSH5-217ENST00000494458 METP08581 1390 aa9.33□□□□□ -0.92
MSH5-217ENST00000494458 TULP4Q9NRJ4 1543 aa9.32□□□□□ -0.92
MSH5-217ENST00000494458 QRICH2Q9H0J4 1663 aa9.32□□□□□ -0.92
MSH5-217ENST00000494458 EVC2Q86UK5 1308 aa9.31□□□□□ -0.92
MSH5-217ENST00000494458 CCDC184Q52MB2 194 aa9.31□□□□□ -0.92
MSH5-217ENST00000494458 TXNDC2Q86VQ3 553 aa9.31□□□□□ -0.92
MSH5-217ENST00000494458 NINLQ9Y2I6 1382 aa9.31□□□□□ -0.92
MSH5-217ENST00000494458 KNDC1Q76NI1 1749 aa9.31□□□□□ -0.92
MSH5-217ENST00000494458 ZNF142P52746 1687 aaPredicted RBP9.3□□□□□ -0.92
MSH5-217ENST00000494458 CEP170BQ9Y4F5 1589 aaPredicted RBP9.3□□□□□ -0.92
MSH5-217ENST00000494458 BRD4O60885 1362 aaPredicted RBP9.3□□□□□ -0.92
MSH5-217ENST00000494458 PIK3R4Q99570 1358 aa9.3□□□□□ -0.92
MSH5-217ENST00000494458 PITPNM1O00562 1244 aa9.3□□□□□ -0.92
MSH5-217ENST00000494458 CARD14Q9BXL6 1004 aa9.3□□□□□ -0.92
MSH5-217ENST00000494458 CPS1P31327 1500 aa9.3□□□□□ -0.92
MSH5-217ENST00000494458 RIMS1Q86UR5 1692 aaKnown RBP9.29□□□□□ -0.92
MSH5-217ENST00000494458 DIP2AQ14689 1571 aa9.29□□□□□ -0.92
MSH5-217ENST00000494458 INSRP06213 1382 aa9.29□□□□□ -0.92
MSH5-217ENST00000494458 PRAM1Q96QH2 718 aa9.29□□□□□ -0.92
MSH5-217ENST00000494458 EID1Q9Y6B2 187 aa9.29□□□□□ -0.92
MSH5-217ENST00000494458 MYBBP1AQ9BQG0 1328 aaKnown RBP9.29□□□□□ -0.92
MSH5-217ENST00000494458 CENPBP07199 599 aaPredicted RBP9.28□□□□□ -0.92
MSH5-217ENST00000494458 PNISRQ8TF01 805 aaKnown RBP9.28□□□□□ -0.92
MSH5-217ENST00000494458 PTPRUQ92729 1446 aa9.28□□□□□ -0.92
MSH5-217ENST00000494458 ATAD2Q6PL18 1390 aa9.27□□□□□ -0.93
MSH5-217ENST00000494458 POLR3GLQ9BT43 218 aa9.27□□□□□ -0.93
MSH5-217ENST00000494458 ZBTB12Q9Y330 459 aaPredicted RBP9.27□□□□□ -0.93
MSH5-217ENST00000494458 CD163L1Q9NR16 1453 aa9.27□□□□□ -0.93
MSH5-217ENST00000494458 ANKRD36BQ8N2N9 1353 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 PLEKHH1Q9ULM0 1364 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 PTCH1Q13635 1447 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 NLRP13Q86W25 1043 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 SLC12A5Q9H2X9 1139 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 STK26Q9P289 416 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 KNSTRNQ9Y448 316 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 USP32Q8NFA0 1604 aa9.26□□□□□ -0.93
MSH5-217ENST00000494458 ROBO2Q9HCK4 1378 aa9.25□□□□□ -0.93
MSH5-217ENST00000494458 ADGRB2O60241 1585 aa9.25□□□□□ -0.93
MSH5-217ENST00000494458 WAPLQ7Z5K2 1190 aa9.25□□□□□ -0.93
MSH5-217ENST00000494458 CDK19Q9BWU1 502 aa9.25□□□□□ -0.93
MSH5-217ENST00000494458 POGKQ9P215 609 aa9.25□□□□□ -0.93
MSH5-217ENST00000494458 ATF5Q9Y2D1 282 aaPredicted RBP9.25□□□□□ -0.93
MSH5-217ENST00000494458 WASLO00401 505 aaPredicted RBP9.24□□□□□ -0.93
MSH5-217ENST00000494458 ANKLE2Q86XL3 938 aa9.24□□□□□ -0.93
MSH5-217ENST00000494458 MRS2Q9HD23 443 aa9.24□□□□□ -0.93
MSH5-217ENST00000494458 CPSF1Q10570 1443 aaKnown RBP9.23□□□□□ -0.93
MSH5-217ENST00000494458 XRN1Q8IZH2 1706 aaKnown RBP9.23□□□□□ -0.93
MSH5-217ENST00000494458 CABP2Q9NPB3 220 aa9.23□□□□□ -0.93
MSH5-217ENST00000494458 NSD2O96028 1365 aa9.23□□□□□ -0.93
MSH5-217ENST00000494458 PPP2R1AP30153 589 aa9.22□□□□□ -0.93
MSH5-217ENST00000494458 AMOTL2Q9Y2J4 779 aa9.22□□□□□ -0.93
MSH5-217ENST00000494458 MINK1Q8N4C8 1332 aaPredicted RBP9.22□□□□□ -0.93
MSH5-217ENST00000494458 ATP7BP35670 1465 aa9.21□□□□□ -0.93
MSH5-217ENST00000494458 PLEKHG3A1L390 1219 aa9.21□□□□□ -0.94
MSH5-217ENST00000494458 YTHDC1Q96MU7 727 aaKnown RBP9.21□□□□□ -0.94
MSH5-217ENST00000494458 SLC26A8Q96RN1 970 aa9.21□□□□□ -0.94
MSH5-217ENST00000494458 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.21□□□□□ -0.94
MSH5-217ENST00000494458 A0A1W2PP64 1363 aa9.21□□□□□ -0.94
MSH5-217ENST00000494458 KDM4FA0A1W2PPD8 638 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 SAFB2Q14151 953 aaKnown RBP eCLIP9.2□□□□□ -0.94
MSH5-217ENST00000494458 CC2D1BQ5T0F9 858 aaKnown RBP9.2□□□□□ -0.94
MSH5-217ENST00000494458 TMC1Q8TDI8 760 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 TERF2IPQ9NYB0 399 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 CCDC61Q9Y6R9 512 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 CGNL1Q0VF96 1302 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 NSD3Q9BZ95 1437 aa9.2□□□□□ -0.94
MSH5-217ENST00000494458 SRPK2P78362 688 aaKnown RBP9.19□□□□□ -0.94
MSH5-217ENST00000494458 CABP1Q9NZU7 370 aa9.19□□□□□ -0.94
MSH5-217ENST00000494458 POLR3AO14802 1390 aaPredicted RBP9.19□□□□□ -0.94
MSH5-217ENST00000494458 CDC42BPGQ6DT37 1551 aa9.19□□□□□ -0.94
MSH5-217ENST00000494458 CHD2O14647 1828 aaKnown RBP9.18□□□□□ -0.94
MSH5-217ENST00000494458 FYB1O15117 783 aa9.18□□□□□ -0.94
MSH5-217ENST00000494458 NPHP4O75161 1426 aaPredicted RBP9.18□□□□□ -0.94
MSH5-217ENST00000494458 ZBED9Q6R2W3 1325 aa9.18□□□□□ -0.94
MSH5-217ENST00000494458 NUDT16Q96DE0 195 aaKnown RBP9.18□□□□□ -0.94
MSH5-217ENST00000494458 ZNF692Q9BU19 519 aaPredicted RBP9.18□□□□□ -0.94
MSH5-217ENST00000494458 PRR36Q9H6K5 1346 aa9.18□□□□□ -0.94
MSH5-217ENST00000494458 SSH2Q76I76 1423 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms