RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CHIC2Q9UKJ5 165 aa18.35■□□□□ 0.53
UPF3A-210ENST00000493727 IDI1Q13907 227 aa18.34■□□□□ 0.53
UPF3A-210ENST00000493727 KCNA6P17658 529 aa18.33■□□□□ 0.52
UPF3A-210ENST00000493727 PSEN1P49768 467 aa18.33■□□□□ 0.52
UPF3A-210ENST00000493727 TIE1P35590 1138 aa18.32■□□□□ 0.52
UPF3A-210ENST00000493727 MYO5BQ9ULV0 1848 aa18.31■□□□□ 0.52
UPF3A-210ENST00000493727 FAM50AQ14320 339 aaKnown RBP18.31■□□□□ 0.52
UPF3A-210ENST00000493727 POTEAQ6S8J7 498 aa18.3■□□□□ 0.52
UPF3A-210ENST00000493727 BMP2KQ9NSY1 1161 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-210ENST00000493727 TAOK2Q9UL54 1235 aa18.3■□□□□ 0.52
UPF3A-210ENST00000493727 RRBP1Q9P2E9 1410 aaKnown RBP18.3■□□□□ 0.52
UPF3A-210ENST00000493727 CHD2O14647 1828 aaKnown RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFP91Q96JP5 570 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 SLC26A8Q96RN1 970 aa18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFYVE9O95405 1425 aa18.28■□□□□ 0.52
UPF3A-210ENST00000493727 ANKRD50Q9ULJ7 1429 aa18.28■□□□□ 0.52
UPF3A-210ENST00000493727 RPRD2Q5VT52 1461 aaKnown RBP18.27■□□□□ 0.52
UPF3A-210ENST00000493727 PHLPP1O60346 1717 aa18.27■□□□□ 0.52
UPF3A-210ENST00000493727 TRIM26Q12899 539 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-210ENST00000493727 SETD1AO15047 1707 aaKnown RBP18.26■□□□□ 0.51
UPF3A-210ENST00000493727 GCC2Q8IWJ2 1684 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 TTLL13PA6NNM8 815 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 RBM33Q96EV2 1170 aaKnown RBP18.26■□□□□ 0.51
UPF3A-210ENST00000493727 TMEM106CQ9BVX2 250 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 COL16A1Q07092 1604 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-210ENST00000493727 POTEIP0CG38 1075 aa18.25■□□□□ 0.51
UPF3A-210ENST00000493727 PROSER2Q86WR7 435 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-210ENST00000493727 ASTLQ6HA08 431 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-210ENST00000493727 SLC52A1Q9NWF4 448 aa18.24■□□□□ 0.51
UPF3A-210ENST00000493727 MSH6P52701 1360 aa18.24■□□□□ 0.51
UPF3A-210ENST00000493727 TMEM131LA2VDJ0 1609 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 PLEKHG1Q9ULL1 1385 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 ATMINO43313 823 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-210ENST00000493727 DCBLD2Q96PD2 775 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 UNC13BO14795 1591 aa18.21■□□□□ 0.51
UPF3A-210ENST00000493727 ROCK1Q13464 1354 aa18.2■□□□□ 0.5
UPF3A-210ENST00000493727 JCADQ9P266 1359 aa18.2■□□□□ 0.5
UPF3A-210ENST00000493727 ITGAEP38570 1179 aa18.19■□□□□ 0.5
UPF3A-210ENST00000493727 ATN1P54259 1190 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-210ENST00000493727 RIMS2Q9UQ26 1411 aa18.19■□□□□ 0.5
UPF3A-210ENST00000493727 NCOA3Q9Y6Q9 1424 aa18.18■□□□□ 0.5
UPF3A-210ENST00000493727 SLAIN2Q9P270 581 aa18.18■□□□□ 0.5
UPF3A-210ENST00000493727 LRP6O75581 1613 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 STK25O00506 426 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 HS6ST3Q8IZP7 471 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 BCL11BQ9C0K0 894 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-210ENST00000493727 DIP2AQ14689 1571 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 AHDC1Q5TGY3 1603 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 ADAMTS13Q76LX8 1427 aa18.16■□□□□ 0.5
UPF3A-210ENST00000493727 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 E9PCH4 1651 aa18.15■□□□□ 0.5
UPF3A-210ENST00000493727 SHPRHQ149N8 1683 aa18.15■□□□□ 0.5
UPF3A-210ENST00000493727 HDGFP51858 240 aaKnown RBP18.15■□□□□ 0.5
UPF3A-210ENST00000493727 IQGAP3Q86VI3 1631 aa18.14■□□□□ 0.49
UPF3A-210ENST00000493727 PCGF6Q9BYE7 350 aa18.14■□□□□ 0.49
UPF3A-210ENST00000493727 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
UPF3A-210ENST00000493727 TBX22Q9Y458 520 aa18.13■□□□□ 0.49
UPF3A-210ENST00000493727 STK24Q9Y6E0 443 aa18.13■□□□□ 0.49
UPF3A-210ENST00000493727 BCANQ96GW7 911 aa18.12■□□□□ 0.49
UPF3A-210ENST00000493727 TRIM35Q9UPQ4 493 aa18.12■□□□□ 0.49
UPF3A-210ENST00000493727 PIK3R4Q99570 1358 aa18.11■□□□□ 0.49
UPF3A-210ENST00000493727 SPATA31A6Q5VVP1 1343 aa18.1■□□□□ 0.49
UPF3A-210ENST00000493727 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-210ENST00000493727 CABP2Q9NPB3 220 aa18.09■□□□□ 0.49
UPF3A-210ENST00000493727 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.08■□□□□ 0.48
UPF3A-210ENST00000493727 NRXN3Q9Y4C0 1643 aa18.08■□□□□ 0.48
UPF3A-210ENST00000493727 TRPM2O94759 1503 aa18.08■□□□□ 0.48
UPF3A-210ENST00000493727 XRN1Q8IZH2 1706 aaKnown RBP18.07■□□□□ 0.48
UPF3A-210ENST00000493727 PTPRUQ92729 1446 aa18.06■□□□□ 0.48
UPF3A-210ENST00000493727 NUP155O75694 1391 aa18.06■□□□□ 0.48
UPF3A-210ENST00000493727 CADPS2Q86UW7 1296 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 C19orf44Q9H6X5 657 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 DCCP43146 1447 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 NHSL1Q5SYE7 1610 aa18.04■□□□□ 0.48
UPF3A-210ENST00000493727 SETBP1Q9Y6X0 1596 aa18.03■□□□□ 0.48
UPF3A-210ENST00000493727 SPHKAPQ2M3C7 1700 aa18.02■□□□□ 0.48
UPF3A-210ENST00000493727 NUTM2DQ5VT03 806 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-210ENST00000493727 ZNF772Q68DY9 489 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-210ENST00000493727 ASXL1Q8IXJ9 1541 aa18.02■□□□□ 0.47
UPF3A-210ENST00000493727 BRINP3Q76B58 766 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 C14orf37Q86TY3 774 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 EFCAB3Q8N7B9 438 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 UPF1Q92900 1129 aaKnown RBP eCLIP18.01■□□□□ 0.47
UPF3A-210ENST00000493727 CDK12Q9NYV4 1490 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-210ENST00000493727 ATF3P18847 181 aa18■□□□□ 0.47
UPF3A-210ENST00000493727 MST1RQ04912 1400 aa17.99■□□□□ 0.47
UPF3A-210ENST00000493727 SETD5Q9C0A6 1442 aa17.99■□□□□ 0.47
UPF3A-210ENST00000493727 MEX3CQ5U5Q3 659 aaKnown RBP17.99■□□□□ 0.47
UPF3A-210ENST00000493727 SRCAPQ6ZRS2 3230 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 GOLGA2Q08379 1002 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 AMOTL2Q9Y2J4 779 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 IER5LQ5T953 404 aa17.97■□□□□ 0.47
UPF3A-210ENST00000493727 MKRN3Q13064 507 aaKnown RBP17.96■□□□□ 0.47
UPF3A-210ENST00000493727 SLC39A7Q92504 469 aa17.96■□□□□ 0.47
UPF3A-210ENST00000493727 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
UPF3A-210ENST00000493727 NALCNQ8IZF0 1738 aa17.95■□□□□ 0.46
UPF3A-210ENST00000493727 NKX1-1Q15270 411 aaPredicted RBP17.94■□□□□ 0.46
UPF3A-210ENST00000493727 HFM1A2PYH4 1435 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms