RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CABP2Q9NPB3 220 aa28.04■■■□□ 2.08
CCDC88B-208ENST00000492980 RCAN3Q9UKA8 241 aa28.04■■■□□ 2.08
CCDC88B-208ENST00000492980 SETD1AO15047 1707 aaKnown RBP28.04■■■□□ 2.08
CCDC88B-208ENST00000492980 B4GALNT3Q6L9W6 998 aa28.03■■■□□ 2.08
CCDC88B-208ENST00000492980 ZMYM3Q14202 1370 aa28.03■■■□□ 2.08
CCDC88B-208ENST00000492980 POLR3AO14802 1390 aaPredicted RBP28.02■■■□□ 2.08
CCDC88B-208ENST00000492980 PLEKHH1Q9ULM0 1364 aa28.02■■■□□ 2.08
CCDC88B-208ENST00000492980 MORC1Q86VD1 984 aa28.01■■■□□ 2.07
CCDC88B-208ENST00000492980 PRAM1Q96QH2 718 aa28.01■■■□□ 2.07
CCDC88B-208ENST00000492980 RRP1P56182 461 aaKnown RBP28■■■□□ 2.07
CCDC88B-208ENST00000492980 NINLQ9Y2I6 1382 aa28■■■□□ 2.07
CCDC88B-208ENST00000492980 CGNL1Q0VF96 1302 aa28■■■□□ 2.07
CCDC88B-208ENST00000492980 ESF1Q9H501 851 aaKnown RBP27.99■■■□□ 2.07
CCDC88B-208ENST00000492980 ZNF521Q96K83 1311 aa27.98■■■□□ 2.07
CCDC88B-208ENST00000492980 SHPRHQ149N8 1683 aa27.97■■■□□ 2.07
CCDC88B-208ENST00000492980 POGKQ9P215 609 aa27.97■■■□□ 2.07
CCDC88B-208ENST00000492980 DLC1Q96QB1 1528 aa27.97■■■□□ 2.07
CCDC88B-208ENST00000492980 MINK1Q8N4C8 1332 aaPredicted RBP27.96■■■□□ 2.07
CCDC88B-208ENST00000492980 NRXN3Q9Y4C0 1643 aa27.96■■■□□ 2.07
CCDC88B-208ENST00000492980 NSD2O96028 1365 aa27.96■■■□□ 2.07
CCDC88B-208ENST00000492980 SRPK2P78362 688 aaKnown RBP27.95■■■□□ 2.07
CCDC88B-208ENST00000492980 ATAD2Q6PL18 1390 aa27.95■■■□□ 2.06
CCDC88B-208ENST00000492980 CCDC146Q8IYE0 955 aa27.94■■■□□ 2.06
CCDC88B-208ENST00000492980 A0A1W2PP64 1363 aa27.93■■■□□ 2.06
CCDC88B-208ENST00000492980 TNRQ92752 1358 aa27.9■■■□□ 2.06
CCDC88B-208ENST00000492980 ABCC11Q96J66 1382 aa27.9■■■□□ 2.06
CCDC88B-208ENST00000492980 TNNT2P45379 298 aaPredicted RBP27.9■■■□□ 2.06
CCDC88B-208ENST00000492980 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.89■■■□□ 2.05
CCDC88B-208ENST00000492980 CD163L1Q9NR16 1453 aa27.89■■■□□ 2.05
CCDC88B-208ENST00000492980 APAF1O14727 1248 aa27.87■■■□□ 2.05
CCDC88B-208ENST00000492980 GOLGA2Q08379 1002 aa27.87■■■□□ 2.05
CCDC88B-208ENST00000492980 DUSP27Q5VZP5 1158 aa27.86■■■□□ 2.05
CCDC88B-208ENST00000492980 UBR1Q8IWV7 1749 aa27.86■■■□□ 2.05
CCDC88B-208ENST00000492980 CDK19Q9BWU1 502 aa27.85■■■□□ 2.05
CCDC88B-208ENST00000492980 ANKRD26Q9UPS8 1709 aa27.85■■■□□ 2.05
CCDC88B-208ENST00000492980 CCDC136Q96JN2 1154 aa27.85■■■□□ 2.05
CCDC88B-208ENST00000492980 RBM19Q9Y4C8 960 aaKnown RBP27.84■■■□□ 2.05
CCDC88B-208ENST00000492980 MTHFSP49914 203 aa27.83■■■□□ 2.05
CCDC88B-208ENST00000492980 TERF2IPQ9NYB0 399 aa27.83■■■□□ 2.05
CCDC88B-208ENST00000492980 SLFN5Q08AF3 891 aa27.82■■■□□ 2.04
CCDC88B-208ENST00000492980 NGEFQ8N5V2 710 aa27.82■■■□□ 2.04
CCDC88B-208ENST00000492980 KNDC1Q76NI1 1749 aa27.82■■■□□ 2.04
CCDC88B-208ENST00000492980 METP08581 1390 aa27.81■■■□□ 2.04
CCDC88B-208ENST00000492980 WAPLQ7Z5K2 1190 aa27.81■■■□□ 2.04
CCDC88B-208ENST00000492980 EXOC6Q8TAG9 804 aa27.8■■■□□ 2.04
CCDC88B-208ENST00000492980 MED14O60244 1454 aa27.8■■■□□ 2.04
CCDC88B-208ENST00000492980 NLRP1Q9C000 1473 aa27.8■■■□□ 2.04
CCDC88B-208ENST00000492980 TRMT2AQ8IZ69 625 aaKnown RBP27.79■■■□□ 2.04
CCDC88B-208ENST00000492980 CFAP53Q96M91 514 aa27.79■■■□□ 2.04
CCDC88B-208ENST00000492980 HDGFP51858 240 aaKnown RBP27.78■■■□□ 2.04
CCDC88B-208ENST00000492980 TMEM2Q9UHN6 1383 aa27.78■■■□□ 2.04
CCDC88B-208ENST00000492980 IQSEC2Q5JU85 1478 aa27.76■■■□□ 2.03
CCDC88B-208ENST00000492980 KIF20BQ96Q89 1820 aa27.76■■■□□ 2.03
CCDC88B-208ENST00000492980 HDGFL2Q7Z4V5 671 aaPredicted RBP27.76■■■□□ 2.03
CCDC88B-208ENST00000492980 PLIN1O60240 522 aa27.75■■■□□ 2.03
CCDC88B-208ENST00000492980 CABP1Q9NZU7 370 aa27.75■■■□□ 2.03
CCDC88B-208ENST00000492980 TECPR2O15040 1411 aa27.74■■■□□ 2.03
CCDC88B-208ENST00000492980 GGNBP2Q9H3C7 697 aa27.74■■■□□ 2.03
CCDC88B-208ENST00000492980 FYB1O15117 783 aa27.74■■■□□ 2.03
CCDC88B-208ENST00000492980 SPINK5Q9NQ38 1064 aaPredicted RBP27.74■■■□□ 2.03
CCDC88B-208ENST00000492980 CPS1P31327 1500 aa27.74■■■□□ 2.03
CCDC88B-208ENST00000492980 RUNDC1Q96C34 613 aa27.73■■■□□ 2.03
CCDC88B-208ENST00000492980 ATP7BP35670 1465 aa27.73■■■□□ 2.03
CCDC88B-208ENST00000492980 FAM135BQ49AJ0 1406 aa27.72■■■□□ 2.03
CCDC88B-208ENST00000492980 NKTRP30414 1462 aaKnown RBP27.71■■■□□ 2.03
CCDC88B-208ENST00000492980 E9PSI1 815 aa27.71■■■□□ 2.03
CCDC88B-208ENST00000492980 C3P01024 1663 aa27.7■■■□□ 2.02
CCDC88B-208ENST00000492980 SIRT1Q96EB6 747 aa27.7■■■□□ 2.02
CCDC88B-208ENST00000492980 DMRT2Q9Y5R5 561 aa27.7■■■□□ 2.02
CCDC88B-208ENST00000492980 COL3A1P02461 1466 aaPredicted RBP27.7■■■□□ 2.02
CCDC88B-208ENST00000492980 TXNDC2Q86VQ3 553 aa27.68■■■□□ 2.02
CCDC88B-208ENST00000492980 WWC1Q8IX03 1113 aa27.68■■■□□ 2.02
CCDC88B-208ENST00000492980 ADAMTS13Q76LX8 1427 aa27.67■■■□□ 2.02
CCDC88B-208ENST00000492980 WASLO00401 505 aaPredicted RBP27.67■■■□□ 2.02
CCDC88B-208ENST00000492980 FER1L4A9Z1Z3 1794 aa27.66■■■□□ 2.02
CCDC88B-208ENST00000492980 CEBPAP49715 358 aaPredicted RBP27.65■■■□□ 2.02
CCDC88B-208ENST00000492980 TCP11L2Q8N4U5 519 aa27.65■■■□□ 2.02
CCDC88B-208ENST00000492980 CRBNQ96SW2 442 aa27.65■■■□□ 2.02
CCDC88B-208ENST00000492980 ADGRB2O60241 1585 aa27.65■■■□□ 2.02
CCDC88B-208ENST00000492980 PHF23Q9BUL5 403 aaPredicted RBP27.64■■■□□ 2.02
CCDC88B-208ENST00000492980 PLEKHG1Q9ULL1 1385 aa27.64■■■□□ 2.02
CCDC88B-208ENST00000492980 PPIP5K1Q6PFW1 1433 aa27.63■■■□□ 2.01
CCDC88B-208ENST00000492980 C20orf194Q5TEA3 1177 aa27.62■■■□□ 2.01
CCDC88B-208ENST00000492980 CPSF1Q10570 1443 aaKnown RBP27.62■■■□□ 2.01
CCDC88B-208ENST00000492980 U2AF1L5P0DN76 240 aaPredicted RBP27.62■■■□□ 2.01
CCDC88B-208ENST00000492980 U2AF1Q01081 240 aaKnown RBP eCLIP27.62■■■□□ 2.01
CCDC88B-208ENST00000492980 RRP7AQ9Y3A4 280 aaKnown RBP27.62■■■□□ 2.01
CCDC88B-208ENST00000492980 LTKP29376 864 aa27.61■■■□□ 2.01
CCDC88B-208ENST00000492980 NEUROD2Q15784 382 aa27.59■■■□□ 2.01
CCDC88B-208ENST00000492980 CDC42BPGQ6DT37 1551 aa27.59■■■□□ 2.01
CCDC88B-208ENST00000492980 ROBO2Q9HCK4 1378 aa27.59■■■□□ 2.01
CCDC88B-208ENST00000492980 CCDC27Q2M243 656 aa27.59■■■□□ 2.01
CCDC88B-208ENST00000492980 NCBP3Q53F19 620 aaKnown RBP27.59■■■□□ 2.01
CCDC88B-208ENST00000492980 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.58■■■□□ 2.01
CCDC88B-208ENST00000492980 SLIT1O75093 1534 aa27.58■■■□□ 2.01
CCDC88B-208ENST00000492980 EDC4Q6P2E9 1401 aaKnown RBP27.58■■■□□ 2.01
CCDC88B-208ENST00000492980 MON2Q7Z3U7 1717 aa27.58■■■□□ 2
CCDC88B-208ENST00000492980 PNPLA6Q8IY17 1366 aa27.57■■■□□ 2
CCDC88B-208ENST00000492980 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.57■■■□□ 2
CCDC88B-208ENST00000492980 ARHGAP23Q9P227 1491 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms