RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 PNPLA6Q8IY17 1366 aa13.28□□□□□ -0.28
HDAC3-211ENST00000491581 PIK3C2GO75747 1445 aa13.28□□□□□ -0.28
HDAC3-211ENST00000491581 LAMC1P11047 1609 aa13.28□□□□□ -0.28
HDAC3-211ENST00000491581 SPATA31A6Q5VVP1 1343 aa13.27□□□□□ -0.29
HDAC3-211ENST00000491581 CFAP70Q5T0N1 1121 aa13.26□□□□□ -0.29
HDAC3-211ENST00000491581 CDC42BPGQ6DT37 1551 aa13.26□□□□□ -0.29
HDAC3-211ENST00000491581 FMN2Q9NZ56 1722 aa13.26□□□□□ -0.29
HDAC3-211ENST00000491581 PRAG1Q86YV5 1406 aa13.25□□□□□ -0.29
HDAC3-211ENST00000491581 AFF2P51816 1311 aa13.25□□□□□ -0.29
HDAC3-211ENST00000491581 ADAMTS2O95450 1211 aa13.25□□□□□ -0.29
HDAC3-211ENST00000491581 C8orf37Q96NL8 207 aa13.25□□□□□ -0.29
HDAC3-211ENST00000491581 SAFB2Q14151 953 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDAC3-211ENST00000491581 YTHDC2Q9H6S0 1430 aaKnown RBP13.23□□□□□ -0.29
HDAC3-211ENST00000491581 LRPPRCP42704 1394 aaKnown RBP13.23□□□□□ -0.29
HDAC3-211ENST00000491581 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
HDAC3-211ENST00000491581 ESCO1Q5FWF5 840 aa13.23□□□□□ -0.29
HDAC3-211ENST00000491581 PXDNQ92626 1479 aa13.23□□□□□ -0.29
HDAC3-211ENST00000491581 ANKRD30BQ9BXX2 1392 aa13.22□□□□□ -0.29
HDAC3-211ENST00000491581 LRRC59Q96AG4 307 aaKnown RBP13.22□□□□□ -0.29
HDAC3-211ENST00000491581 NRXN1Q9ULB1 1477 aa13.22□□□□□ -0.29
HDAC3-211ENST00000491581 TECPR2O15040 1411 aa13.22□□□□□ -0.29
HDAC3-211ENST00000491581 USP32Q8NFA0 1604 aa13.21□□□□□ -0.29
HDAC3-211ENST00000491581 SOS2Q07890 1332 aaPredicted RBP13.21□□□□□ -0.29
HDAC3-211ENST00000491581 FOXO3O43524 673 aa13.21□□□□□ -0.29
HDAC3-211ENST00000491581 KDM2AQ9Y2K7 1162 aa13.21□□□□□ -0.29
HDAC3-211ENST00000491581 COL22A1Q8NFW1 1626 aaPredicted RBP13.21□□□□□ -0.3
HDAC3-211ENST00000491581 MARF1Q9Y4F3 1742 aaKnown RBP13.2□□□□□ -0.3
HDAC3-211ENST00000491581 MYOM2P54296 1465 aa13.2□□□□□ -0.3
HDAC3-211ENST00000491581 C14orf93Q9H972 538 aaKnown RBP13.19□□□□□ -0.3
HDAC3-211ENST00000491581 ADGRB1O14514 1584 aa13.19□□□□□ -0.3
HDAC3-211ENST00000491581 ABCC11Q96J66 1382 aa13.19□□□□□ -0.3
HDAC3-211ENST00000491581 RGS12O14924 1447 aa13.18□□□□□ -0.3
HDAC3-211ENST00000491581 ZNF772Q68DY9 489 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-211ENST00000491581 PRAM1Q96QH2 718 aa13.17□□□□□ -0.3
HDAC3-211ENST00000491581 HIRIP3Q9BW71 556 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-211ENST00000491581 RXRBP28702 533 aa13.16□□□□□ -0.3
HDAC3-211ENST00000491581 DCAF11Q8TEB1 546 aa13.16□□□□□ -0.3
HDAC3-211ENST00000491581 NGLY1Q96IV0 654 aa13.16□□□□□ -0.3
HDAC3-211ENST00000491581 QTRT2Q9H974 415 aaKnown RBP13.16□□□□□ -0.3
HDAC3-211ENST00000491581 ABCA3Q99758 1704 aa13.16□□□□□ -0.3
HDAC3-211ENST00000491581 TRAK1Q9UPV9 953 aa13.15□□□□□ -0.3
HDAC3-211ENST00000491581 ARHGEF28Q8N1W1 1705 aaKnown RBP13.15□□□□□ -0.3
HDAC3-211ENST00000491581 DHX57Q6P158 1386 aaKnown RBP13.15□□□□□ -0.3
HDAC3-211ENST00000491581 KIF1AQ12756 1690 aa13.15□□□□□ -0.31
HDAC3-211ENST00000491581 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
HDAC3-211ENST00000491581 UPF1Q92900 1129 aaKnown RBP eCLIP13.14□□□□□ -0.31
HDAC3-211ENST00000491581 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-211ENST00000491581 PMFBP1Q8TBY8 1022 aa13.13□□□□□ -0.31
HDAC3-211ENST00000491581 NPHP3Q7Z494 1330 aa13.13□□□□□ -0.31
HDAC3-211ENST00000491581 USP21Q9UK80 565 aa13.12□□□□□ -0.31
HDAC3-211ENST00000491581 PRR36Q9H6K5 1346 aa13.12□□□□□ -0.31
HDAC3-211ENST00000491581 TRPM3Q9HCF6 1732 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-211ENST00000491581 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
HDAC3-211ENST00000491581 BCL9LQ86UU0 1499 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 DLC1Q96QB1 1528 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 PLCH1Q4KWH8 1693 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 POGKQ9P215 609 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 ADGRB2O60241 1585 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
HDAC3-211ENST00000491581 BRWD3Q6RI45 1802 aa13.09□□□□□ -0.31
HDAC3-211ENST00000491581 MAPK8IP2Q13387 824 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-211ENST00000491581 PHF8Q9UPP1 1060 aa13.09□□□□□ -0.31
HDAC3-211ENST00000491581 GLI3P10071 1580 aa13.08□□□□□ -0.32
HDAC3-211ENST00000491581 ATRNO75882 1429 aa13.08□□□□□ -0.32
HDAC3-211ENST00000491581 RBM6P78332 1123 aaKnown RBP13.08□□□□□ -0.32
HDAC3-211ENST00000491581 LMOD2Q6P5Q4 547 aa13.08□□□□□ -0.32
HDAC3-211ENST00000491581 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-211ENST00000491581 FNBP4Q8N3X1 1017 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-211ENST00000491581 ALS2Q96Q42 1657 aa13.07□□□□□ -0.32
HDAC3-211ENST00000491581 CRYBG1Q9Y4K1 1723 aa13.07□□□□□ -0.32
HDAC3-211ENST00000491581 TNS3Q68CZ2 1445 aa13.06□□□□□ -0.32
HDAC3-211ENST00000491581 NBPF1Q3BBV0 1214 aa13.06□□□□□ -0.32
HDAC3-211ENST00000491581 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
HDAC3-211ENST00000491581 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.05□□□□□ -0.32
HDAC3-211ENST00000491581 TULP4Q9NRJ4 1543 aa13.04□□□□□ -0.32
HDAC3-211ENST00000491581 SIN3AQ96ST3 1273 aa13.04□□□□□ -0.32
HDAC3-211ENST00000491581 SLIT2O94813 1529 aa13.03□□□□□ -0.32
HDAC3-211ENST00000491581 NRAPQ86VF7 1730 aa13.03□□□□□ -0.32
HDAC3-211ENST00000491581 PSME1Q06323 249 aa13.03□□□□□ -0.32
HDAC3-211ENST00000491581 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-211ENST00000491581 RALGAPBQ86X10 1494 aa13.03□□□□□ -0.32
HDAC3-211ENST00000491581 TOPAZ1Q8N9V7 1692 aa13.02□□□□□ -0.32
HDAC3-211ENST00000491581 ATP7BP35670 1465 aa13.02□□□□□ -0.33
HDAC3-211ENST00000491581 WASLO00401 505 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-211ENST00000491581 CACNB1Q02641 598 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-211ENST00000491581 ANKARQ7Z5J8 1434 aa13.01□□□□□ -0.33
HDAC3-211ENST00000491581 ITSN1Q15811 1721 aa13.01□□□□□ -0.33
HDAC3-211ENST00000491581 KIAA1210Q9ULL0 1709 aa13.01□□□□□ -0.33
HDAC3-211ENST00000491581 QRICH2Q9H0J4 1663 aa13□□□□□ -0.33
HDAC3-211ENST00000491581 PHRF1Q9P1Y6 1649 aaKnown RBP13□□□□□ -0.33
HDAC3-211ENST00000491581 FAM83GA6ND36 823 aa13□□□□□ -0.33
HDAC3-211ENST00000491581 HRCP23327 699 aa13□□□□□ -0.33
HDAC3-211ENST00000491581 HAP1P54257 671 aaPredicted RBP13□□□□□ -0.33
HDAC3-211ENST00000491581 NUTM2GQ5VZR2 741 aa13□□□□□ -0.33
HDAC3-211ENST00000491581 GJD4Q96KN9 370 aaPredicted RBP13□□□□□ -0.33
HDAC3-211ENST00000491581 NWD2Q9ULI1 1742 aa12.99□□□□□ -0.33
HDAC3-211ENST00000491581 SBNO1A3KN83 1393 aa12.99□□□□□ -0.33
HDAC3-211ENST00000491581 ACIN1Q9UKV3 1341 aaKnown RBP12.99□□□□□ -0.33
HDAC3-211ENST00000491581 PAK3O75914 559 aaPredicted RBP12.98□□□□□ -0.33
HDAC3-211ENST00000491581 UNC5CLQ8IV45 518 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms