RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 POTEIP0CG38 1075 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 NBPF8Q3BBV2 869 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 ASTLQ6HA08 431 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-229ENST00000490866 ANKLE2Q86XL3 938 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 SIRT1Q96EB6 747 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 CIZ1Q9ULV3 898 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-229ENST00000490866 TMEM2Q9UHN6 1383 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 RALGAPBQ86X10 1494 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 NRXN1Q9ULB1 1477 aa9.71□□□□□ -0.86
SYNE1-229ENST00000490866 TIE1P35590 1138 aa9.7□□□□□ -0.86
SYNE1-229ENST00000490866 A2ML1A8K2U0 1454 aa9.7□□□□□ -0.86
SYNE1-229ENST00000490866 UGGT1Q9NYU2 1555 aa9.7□□□□□ -0.86
SYNE1-229ENST00000490866 C3P01024 1663 aa9.7□□□□□ -0.86
SYNE1-229ENST00000490866 LAMC1P11047 1609 aa9.69□□□□□ -0.86
SYNE1-229ENST00000490866 PYGBP11216 843 aa9.69□□□□□ -0.86
SYNE1-229ENST00000490866 CEBPAP49715 358 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-229ENST00000490866 TXNDC2Q86VQ3 553 aa9.69□□□□□ -0.86
SYNE1-229ENST00000490866 PUS7Q96PZ0 661 aaKnown RBP9.69□□□□□ -0.86
SYNE1-229ENST00000490866 PTPRMP28827 1452 aa9.68□□□□□ -0.86
SYNE1-229ENST00000490866 PIK3C2GO75747 1445 aa9.68□□□□□ -0.86
SYNE1-229ENST00000490866 ZNF467Q7Z7K2 595 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-229ENST00000490866 TBX22Q9Y458 520 aa9.68□□□□□ -0.86
SYNE1-229ENST00000490866 PPLO60437 1756 aa9.68□□□□□ -0.86
SYNE1-229ENST00000490866 SETBP1Q9Y6X0 1596 aa9.67□□□□□ -0.86
SYNE1-229ENST00000490866 RIMS2Q9UQ26 1411 aa9.67□□□□□ -0.86
SYNE1-229ENST00000490866 ADGRF5Q8IZF2 1346 aa9.67□□□□□ -0.86
SYNE1-229ENST00000490866 MADDQ8WXG6 1647 aa9.67□□□□□ -0.86
SYNE1-229ENST00000490866 SLIT1O75093 1534 aa9.66□□□□□ -0.86
SYNE1-229ENST00000490866 PIK3R4Q99570 1358 aa9.66□□□□□ -0.86
SYNE1-229ENST00000490866 ATMINO43313 823 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-229ENST00000490866 TMF1P82094 1093 aa9.66□□□□□ -0.86
SYNE1-229ENST00000490866 IFNL1Q8IU54 200 aa9.66□□□□□ -0.86
SYNE1-229ENST00000490866 BCANQ96GW7 911 aa9.66□□□□□ -0.86
SYNE1-229ENST00000490866 SCAF11Q99590 1463 aaKnown RBP9.66□□□□□ -0.86
SYNE1-229ENST00000490866 IFT172Q9UG01 1749 aa9.65□□□□□ -0.86
SYNE1-229ENST00000490866 USP47Q96K76 1375 aa9.65□□□□□ -0.86
SYNE1-229ENST00000490866 PLEKHG1Q9ULL1 1385 aa9.65□□□□□ -0.86
SYNE1-229ENST00000490866 RIMS1Q86UR5 1692 aaKnown RBP9.65□□□□□ -0.86
SYNE1-229ENST00000490866 HSPA5P11021 654 aaKnown RBP9.65□□□□□ -0.86
SYNE1-229ENST00000490866 CFAP70Q5T0N1 1121 aa9.65□□□□□ -0.86
SYNE1-229ENST00000490866 NEXMIFQ5QGS0 1516 aa9.65□□□□□ -0.86
SYNE1-229ENST00000490866 TRPM1Q7Z4N2 1603 aa9.64□□□□□ -0.87
SYNE1-229ENST00000490866 UBR1Q8IWV7 1749 aa9.64□□□□□ -0.87
SYNE1-229ENST00000490866 ARHGAP23Q9P227 1491 aa9.64□□□□□ -0.87
SYNE1-229ENST00000490866 SBNO2Q9Y2G9 1366 aa9.63□□□□□ -0.87
SYNE1-229ENST00000490866 ST20-MTHFSA0A0A6YYL1 179 aa9.63□□□□□ -0.87
SYNE1-229ENST00000490866 C7P10643 843 aa9.63□□□□□ -0.87
SYNE1-229ENST00000490866 NBPF1Q3BBV0 1214 aa9.63□□□□□ -0.87
SYNE1-229ENST00000490866 ABCC11Q96J66 1382 aa9.63□□□□□ -0.87
SYNE1-229ENST00000490866 SLC39A7Q92504 469 aa9.62□□□□□ -0.87
SYNE1-229ENST00000490866 BMP2KQ9NSY1 1161 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-229ENST00000490866 CEP170BQ9Y4F5 1589 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-229ENST00000490866 WASHC2AQ641Q2 1341 aa9.61□□□□□ -0.87
SYNE1-229ENST00000490866 ZNF142P52746 1687 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-229ENST00000490866 MYO3AQ8NEV4 1616 aa9.6□□□□□ -0.87
SYNE1-229ENST00000490866 CENPJQ9HC77 1338 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-229ENST00000490866 DIP2AQ14689 1571 aa9.6□□□□□ -0.87
SYNE1-229ENST00000490866 KDM4FA0A1W2PPD8 638 aa9.6□□□□□ -0.87
SYNE1-229ENST00000490866 DIEXFQ68CQ4 756 aaKnown RBP9.6□□□□□ -0.87
SYNE1-229ENST00000490866 POGKQ9P215 609 aa9.6□□□□□ -0.87
SYNE1-229ENST00000490866 LRPPRCP42704 1394 aaKnown RBP9.6□□□□□ -0.87
SYNE1-229ENST00000490866 EVC2Q86UK5 1308 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 FAM135BQ49AJ0 1406 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 TTLL13PA6NNM8 815 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 LTKP29376 864 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 ATN1P54259 1190 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-229ENST00000490866 ALKQ9UM73 1620 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 MED14O60244 1454 aa9.59□□□□□ -0.87
SYNE1-229ENST00000490866 MYO5BQ9ULV0 1848 aa9.59□□□□□ -0.88
SYNE1-229ENST00000490866 YTHDC2Q9H6S0 1430 aaKnown RBP9.58□□□□□ -0.88
SYNE1-229ENST00000490866 PCDHB8Q9UN66 801 aa9.58□□□□□ -0.88
SYNE1-229ENST00000490866 TRAK1Q9UPV9 953 aa9.58□□□□□ -0.88
SYNE1-229ENST00000490866 TRPC6Q9Y210 931 aa9.58□□□□□ -0.88
SYNE1-229ENST00000490866 NINLQ9Y2I6 1382 aa9.58□□□□□ -0.88
SYNE1-229ENST00000490866 DLC1Q96QB1 1528 aa9.57□□□□□ -0.88
SYNE1-229ENST00000490866 IER5LQ5T953 404 aa9.57□□□□□ -0.88
SYNE1-229ENST00000490866 NUTM2DQ5VT03 806 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-229ENST00000490866 PELP1Q8IZL8 1130 aaKnown RBP9.57□□□□□ -0.88
SYNE1-229ENST00000490866 TESK2Q96S53 571 aa9.57□□□□□ -0.88
SYNE1-229ENST00000490866 TMEM106CQ9BVX2 250 aa9.57□□□□□ -0.88
SYNE1-229ENST00000490866 ADGRB1O14514 1584 aa9.56□□□□□ -0.88
SYNE1-229ENST00000490866 KTN1Q86UP2 1357 aaKnown RBP9.56□□□□□ -0.88
SYNE1-229ENST00000490866 TMEM132EQ6IEE7 984 aa9.56□□□□□ -0.88
SYNE1-229ENST00000490866 TECPR2O15040 1411 aa9.56□□□□□ -0.88
SYNE1-229ENST00000490866 CCDC7Q96M83 1385 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 KCNA6P17658 529 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 PDAP1Q13442 181 aaKnown RBP9.55□□□□□ -0.88
SYNE1-229ENST00000490866 LHX8Q68G74 356 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 TAOK2Q9UL54 1235 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 AMOTL2Q9Y2J4 779 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 IQGAP1P46940 1657 aa9.55□□□□□ -0.88
SYNE1-229ENST00000490866 ANP32CO43423 234 aa9.54□□□□□ -0.88
SYNE1-229ENST00000490866 STK26Q9P289 416 aa9.54□□□□□ -0.88
SYNE1-229ENST00000490866 NPHP4O75161 1426 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-229ENST00000490866 NCOA3Q9Y6Q9 1424 aa9.54□□□□□ -0.88
SYNE1-229ENST00000490866 POLR1AO95602 1720 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-229ENST00000490866 ATAD2Q6PL18 1390 aa9.53□□□□□ -0.88
SYNE1-229ENST00000490866 PSEN1P49768 467 aa9.53□□□□□ -0.88
SYNE1-229ENST00000490866 DDX10Q13206 875 aaKnown RBP9.53□□□□□ -0.88
SYNE1-229ENST00000490866 PRAM1Q96QH2 718 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms