RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 ARHGEF28Q8N1W1 1705 aaKnown RBP27.96■■■□□ 2.07
SHROOM3-209ENST00000490690 ATF3P18847 181 aa27.96■■■□□ 2.07
SHROOM3-209ENST00000490690 USP47Q96K76 1375 aa27.96■■■□□ 2.07
SHROOM3-209ENST00000490690 SBNO2Q9Y2G9 1366 aa27.95■■■□□ 2.06
SHROOM3-209ENST00000490690 TOM1O60784 492 aa27.93■■■□□ 2.06
SHROOM3-209ENST00000490690 EIF4G2P78344 907 aaKnown RBP eCLIP27.93■■■□□ 2.06
SHROOM3-209ENST00000490690 PLEKHH1Q9ULM0 1364 aa27.93■■■□□ 2.06
SHROOM3-209ENST00000490690 CDC42BPGQ6DT37 1551 aa27.9■■■□□ 2.06
SHROOM3-209ENST00000490690 SAFB2Q14151 953 aaKnown RBP eCLIP27.9■■■□□ 2.06
SHROOM3-209ENST00000490690 RBM33Q96EV2 1170 aaKnown RBP27.9■■■□□ 2.06
SHROOM3-209ENST00000490690 ADGRB2O60241 1585 aa27.9■■■□□ 2.06
SHROOM3-209ENST00000490690 MINK1Q8N4C8 1332 aaPredicted RBP27.87■■■□□ 2.05
SHROOM3-209ENST00000490690 EVC2Q86UK5 1308 aa27.86■■■□□ 2.05
SHROOM3-209ENST00000490690 XIRP1Q702N8 1843 aaKnown RBP27.85■■■□□ 2.05
SHROOM3-209ENST00000490690 NALCNQ8IZF0 1738 aa27.85■■■□□ 2.05
SHROOM3-209ENST00000490690 ST20-MTHFSA0A0A6YYL1 179 aa27.85■■■□□ 2.05
SHROOM3-209ENST00000490690 WASLO00401 505 aaPredicted RBP27.84■■■□□ 2.05
SHROOM3-209ENST00000490690 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.83■■■□□ 2.05
SHROOM3-209ENST00000490690 QRICH2Q9H0J4 1663 aa27.82■■■□□ 2.04
SHROOM3-209ENST00000490690 UBAP1LF5GYI3 381 aa27.82■■■□□ 2.04
SHROOM3-209ENST00000490690 CDCA8Q53HL2 280 aa27.82■■■□□ 2.04
SHROOM3-209ENST00000490690 ANKARQ7Z5J8 1434 aa27.81■■■□□ 2.04
SHROOM3-209ENST00000490690 TMF1P82094 1093 aa27.8■■■□□ 2.04
SHROOM3-209ENST00000490690 HIRIP3Q9BW71 556 aaPredicted RBP27.8■■■□□ 2.04
SHROOM3-209ENST00000490690 PUS7Q96PZ0 661 aaKnown RBP27.79■■■□□ 2.04
SHROOM3-209ENST00000490690 SLAIN2Q9P270 581 aa27.79■■■□□ 2.04
SHROOM3-209ENST00000490690 MST1RQ04912 1400 aa27.76■■■□□ 2.04
SHROOM3-209ENST00000490690 HSPA5P11021 654 aaKnown RBP27.76■■■□□ 2.03
SHROOM3-209ENST00000490690 SRPK2P78362 688 aaKnown RBP27.76■■■□□ 2.03
SHROOM3-209ENST00000490690 TESK2Q96S53 571 aa27.76■■■□□ 2.03
SHROOM3-209ENST00000490690 CDK19Q9BWU1 502 aa27.76■■■□□ 2.03
SHROOM3-209ENST00000490690 TULP4Q9NRJ4 1543 aa27.76■■■□□ 2.03
SHROOM3-209ENST00000490690 ATAD2Q6PL18 1390 aa27.73■■■□□ 2.03
SHROOM3-209ENST00000490690 C1orf167Q5SNV9 1468 aa27.73■■■□□ 2.03
SHROOM3-209ENST00000490690 FMN2Q9NZ56 1722 aa27.72■■■□□ 2.03
SHROOM3-209ENST00000490690 CCDC61Q9Y6R9 512 aa27.7■■■□□ 2.02
SHROOM3-209ENST00000490690 FBXO41Q8TF61 875 aa27.68■■■□□ 2.02
SHROOM3-209ENST00000490690 NUDT16Q96DE0 195 aaKnown RBP27.68■■■□□ 2.02
SHROOM3-209ENST00000490690 ESCO1Q5FWF5 840 aa27.67■■■□□ 2.02
SHROOM3-209ENST00000490690 NINLQ9Y2I6 1382 aa27.67■■■□□ 2.02
SHROOM3-209ENST00000490690 SCAF1Q9H7N4 1312 aaKnown RBP27.66■■■□□ 2.02
SHROOM3-209ENST00000490690 ATP7BP35670 1465 aa27.65■■■□□ 2.02
SHROOM3-209ENST00000490690 PIP4K2BP78356 416 aa27.65■■■□□ 2.02
SHROOM3-209ENST00000490690 CABP2Q9NPB3 220 aa27.65■■■□□ 2.02
SHROOM3-209ENST00000490690 NUTM2FA1L443 756 aa27.63■■■□□ 2.01
SHROOM3-209ENST00000490690 BRINP3Q76B58 766 aa27.63■■■□□ 2.01
SHROOM3-209ENST00000490690 PHF8Q9UPP1 1060 aa27.62■■■□□ 2.01
SHROOM3-209ENST00000490690 KIF1AQ12756 1690 aa27.62■■■□□ 2.01
SHROOM3-209ENST00000490690 ITSN1Q15811 1721 aa27.61■■■□□ 2.01
SHROOM3-209ENST00000490690 NPHP3Q7Z494 1330 aa27.61■■■□□ 2.01
SHROOM3-209ENST00000490690 PRR36Q9H6K5 1346 aa27.6■■■□□ 2.01
SHROOM3-209ENST00000490690 DISP3Q9P2K9 1392 aa27.6■■■□□ 2.01
SHROOM3-209ENST00000490690 PLEKHG3A1L390 1219 aa27.59■■■□□ 2.01
SHROOM3-209ENST00000490690 ORAI2Q96SN7 254 aa27.58■■■□□ 2.01
SHROOM3-209ENST00000490690 PPIP5K1Q6PFW1 1433 aa27.58■■■□□ 2
SHROOM3-209ENST00000490690 ROBO1Q9Y6N7 1651 aa27.56■■■□□ 2
SHROOM3-209ENST00000490690 NGDNQ8NEJ9 315 aaKnown RBP27.56■■■□□ 2
SHROOM3-209ENST00000490690 USP32Q8NFA0 1604 aa27.56■■■□□ 2
SHROOM3-209ENST00000490690 BRD4O60885 1362 aaPredicted RBP27.54■■■□□ 2
SHROOM3-209ENST00000490690 PSME1Q06323 249 aa27.54■■■□□ 2
SHROOM3-209ENST00000490690 ZNF692Q9BU19 519 aaPredicted RBP27.54■■■□□ 2
SHROOM3-209ENST00000490690 POLR3AO14802 1390 aaPredicted RBP27.53■■■□□ 2
SHROOM3-209ENST00000490690 TERF2IPQ9NYB0 399 aa27.53■■■□□ 2
SHROOM3-209ENST00000490690 TOPAZ1Q8N9V7 1692 aa27.52■■■□□ 2
SHROOM3-209ENST00000490690 TMC1Q8TDI8 760 aa27.52■■■□□ 2
SHROOM3-209ENST00000490690 CABP1Q9NZU7 370 aa27.52■■■□□ 2
SHROOM3-209ENST00000490690 AHDC1Q5TGY3 1603 aaPredicted RBP27.52■■■□□ 2
SHROOM3-209ENST00000490690 HDGFL2Q7Z4V5 671 aaPredicted RBP27.51■■□□□ 1.99
SHROOM3-209ENST00000490690 PMFBP1Q8TBY8 1022 aa27.51■■□□□ 1.99
SHROOM3-209ENST00000490690 FOXO3O43524 673 aa27.5■■□□□ 1.99
SHROOM3-209ENST00000490690 ACEP12821 1306 aa27.48■■□□□ 1.99
SHROOM3-209ENST00000490690 SOS2Q07890 1332 aaPredicted RBP27.46■■□□□ 1.99
SHROOM3-209ENST00000490690 NHSL1Q5SYE7 1610 aa27.46■■□□□ 1.99
SHROOM3-209ENST00000490690 LRRC59Q96AG4 307 aaKnown RBP27.46■■□□□ 1.99
SHROOM3-209ENST00000490690 POLR3GLQ9BT43 218 aa27.45■■□□□ 1.98
SHROOM3-209ENST00000490690 KIF7Q2M1P5 1343 aa27.44■■□□□ 1.98
SHROOM3-209ENST00000490690 KRT28Q7Z3Y7 464 aa27.44■■□□□ 1.98
SHROOM3-209ENST00000490690 RGPD8O14715 1765 aaPredicted RBP27.44■■□□□ 1.98
SHROOM3-209ENST00000490690 SBNO1A3KN83 1393 aa27.44■■□□□ 1.98
SHROOM3-209ENST00000490690 ANKRD36BQ8N2N9 1353 aa27.44■■□□□ 1.98
SHROOM3-209ENST00000490690 CCDC7Q96M83 1385 aa27.43■■□□□ 1.98
SHROOM3-209ENST00000490690 CPSF1Q10570 1443 aaKnown RBP27.42■■□□□ 1.98
SHROOM3-209ENST00000490690 SLC12A5Q9H2X9 1139 aa27.42■■□□□ 1.98
SHROOM3-209ENST00000490690 PXDNQ92626 1479 aa27.4■■□□□ 1.98
SHROOM3-209ENST00000490690 KTN1Q86UP2 1357 aaKnown RBP27.4■■□□□ 1.98
SHROOM3-209ENST00000490690 USP6P35125 1406 aa27.4■■□□□ 1.98
SHROOM3-209ENST00000490690 PHLPP1O60346 1717 aa27.39■■□□□ 1.98
SHROOM3-209ENST00000490690 ARHGEF10O15013 1369 aa27.38■■□□□ 1.97
SHROOM3-209ENST00000490690 C11orf95C9JLR9 678 aaPredicted RBP27.38■■□□□ 1.97
SHROOM3-209ENST00000490690 HSPA1LP34931 641 aa27.38■■□□□ 1.97
SHROOM3-209ENST00000490690 TTC21AQ8NDW8 1320 aa27.38■■□□□ 1.97
SHROOM3-209ENST00000490690 WASHC2AQ641Q2 1341 aa27.37■■□□□ 1.97
SHROOM3-209ENST00000490690 A0A1W2PP64 1363 aa27.36■■□□□ 1.97
SHROOM3-209ENST00000490690 TNS3Q68CZ2 1445 aa27.36■■□□□ 1.97
SHROOM3-209ENST00000490690 EDC4Q6P2E9 1401 aaKnown RBP27.36■■□□□ 1.97
SHROOM3-209ENST00000490690 JCADQ9P266 1359 aa27.35■■□□□ 1.97
SHROOM3-209ENST00000490690 SPATA31A3Q5VYP0 1347 aa27.35■■□□□ 1.97
SHROOM3-209ENST00000490690 COL16A1Q07092 1604 aaPredicted RBP27.34■■□□□ 1.97
SHROOM3-209ENST00000490690 PAK3O75914 559 aaPredicted RBP27.34■■□□□ 1.97
SHROOM3-209ENST00000490690 DDX17Q92841 729 aaKnown RBP27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms