RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SSFA2P28290 1259 aa15.77■□□□□ 0.12
SHOX2-205ENST00000490689 CLCN1P35523 988 aa15.77■□□□□ 0.12
SHOX2-205ENST00000490689 FGD1P98174 961 aa15.77■□□□□ 0.12
SHOX2-205ENST00000490689 CDC45O75419 566 aa15.77■□□□□ 0.12
SHOX2-205ENST00000490689 GRIN2BQ13224 1484 aa15.77■□□□□ 0.11
SHOX2-205ENST00000490689 UGGT2Q9NYU1 1516 aa15.77■□□□□ 0.11
SHOX2-205ENST00000490689 CAMSAP2Q08AD1 1489 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 CHD1LQ86WJ1 897 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 SSH1Q8WYL5 1049 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 THOC2Q8NI27 1593 aaKnown RBP15.76■□□□□ 0.11
SHOX2-205ENST00000490689 ANO2Q9NQ90 1003 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 SPATA31E1Q6ZUB1 1445 aa15.76■□□□□ 0.11
SHOX2-205ENST00000490689 XPCQ01831 940 aaPredicted RBP15.76■□□□□ 0.11
SHOX2-205ENST00000490689 EVC2Q86UK5 1308 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 NUTM2FA1L443 756 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 ZSCAN30Q86W11 494 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 WDR63Q8IWG1 891 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 SNAPC4Q5SXM2 1469 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 HMMRO75330 724 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 TESK2Q96S53 571 aa15.75■□□□□ 0.11
SHOX2-205ENST00000490689 CFAP43Q8NDM7 1665 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 RTF1Q92541 710 aaKnown RBP15.74■□□□□ 0.11
SHOX2-205ENST00000490689 REC8O95072 547 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 UQCRHLA0A096LP55 91 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 UQCRHP07919 91 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 NEK4P51957 841 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 TEX14Q8IWB6 1497 aa15.74■□□□□ 0.11
SHOX2-205ENST00000490689 CSPP1Q1MSJ5 1256 aa15.73■□□□□ 0.11
SHOX2-205ENST00000490689 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.73■□□□□ 0.11
SHOX2-205ENST00000490689 INTS3Q68E01 1043 aaKnown RBP15.73■□□□□ 0.11
SHOX2-205ENST00000490689 PRDM10Q9NQV6 1147 aa15.73■□□□□ 0.11
SHOX2-205ENST00000490689 PHF14O94880 888 aa15.72■□□□□ 0.11
SHOX2-205ENST00000490689 NECTIN2Q92692 538 aa15.72■□□□□ 0.11
SHOX2-205ENST00000490689 ISY1Q9ULR0 285 aaKnown RBP15.72■□□□□ 0.11
SHOX2-205ENST00000490689 DNMBPQ6XZF7 1577 aa15.72■□□□□ 0.11
SHOX2-205ENST00000490689 PLEKHH2Q8IVE3 1493 aa15.72■□□□□ 0.11
SHOX2-205ENST00000490689 TRIM27P14373 513 aa15.72■□□□□ 0.11
SHOX2-205ENST00000490689 RBM42Q9BTD8 480 aaKnown RBP15.72■□□□□ 0.11
SHOX2-205ENST00000490689 THUMPD2Q9BTF0 503 aaKnown RBP15.71■□□□□ 0.11
SHOX2-205ENST00000490689 HAP1P54257 671 aaPredicted RBP15.71■□□□□ 0.11
SHOX2-205ENST00000490689 RALGAPBQ86X10 1494 aa15.71■□□□□ 0.1
SHOX2-205ENST00000490689 PRKAR2BP31323 418 aa15.7■□□□□ 0.1
SHOX2-205ENST00000490689 NINLQ9Y2I6 1382 aa15.7■□□□□ 0.1
SHOX2-205ENST00000490689 PLB1Q6P1J6 1458 aa15.7■□□□□ 0.1
SHOX2-205ENST00000490689 MLECQ14165 292 aa15.7■□□□□ 0.1
SHOX2-205ENST00000490689 CIZ1Q9ULV3 898 aaPredicted RBP15.7■□□□□ 0.1
SHOX2-205ENST00000490689 SYCE3A1L190 88 aa15.69■□□□□ 0.1
SHOX2-205ENST00000490689 ARHGEF11O15085 1522 aa15.69■□□□□ 0.1
SHOX2-205ENST00000490689 ZNF592Q92610 1267 aa15.69■□□□□ 0.1
SHOX2-205ENST00000490689 STK31Q9BXU1 1019 aa15.69■□□□□ 0.1
SHOX2-205ENST00000490689 API5Q9BZZ5 524 aaKnown RBP15.69■□□□□ 0.1
SHOX2-205ENST00000490689 CCDC39Q9UFE4 941 aa15.69■□□□□ 0.1
SHOX2-205ENST00000490689 RABEP1Q15276 862 aa15.68■□□□□ 0.1
SHOX2-205ENST00000490689 CCDC27Q2M243 656 aa15.67■□□□□ 0.1
SHOX2-205ENST00000490689 TMPOP42166 694 aaKnown RBP15.66■□□□□ 0.1
SHOX2-205ENST00000490689 MAP7D2Q96T17 732 aa15.66■□□□□ 0.1
SHOX2-205ENST00000490689 KDM6BO15054 1643 aa15.66■□□□□ 0.1
SHOX2-205ENST00000490689 RBM27Q9P2N5 1060 aaKnown RBP15.66■□□□□ 0.1
SHOX2-205ENST00000490689 NSD3Q9BZ95 1437 aa15.66■□□□□ 0.1
SHOX2-205ENST00000490689 ZNF771Q7L3S4 317 aaPredicted RBP15.65■□□□□ 0.1
SHOX2-205ENST00000490689 GCC1Q96CN9 775 aa15.65■□□□□ 0.1
SHOX2-205ENST00000490689 PZPP20742 1482 aa15.65■□□□□ 0.1
SHOX2-205ENST00000490689 PDCL3Q9H2J4 239 aa15.65■□□□□ 0.1
SHOX2-205ENST00000490689 GOLGA6L6A8MZA4 724 aa15.65■□□□□ 0.1
SHOX2-205ENST00000490689 LMOD3Q0VAK6 560 aa15.65■□□□□ 0.1
SHOX2-205ENST00000490689 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.65■□□□□ 0.1
SHOX2-205ENST00000490689 VPS37CA5D8V6 355 aaPredicted RBP15.64■□□□□ 0.09
SHOX2-205ENST00000490689 GNAI1P63096 354 aa15.64■□□□□ 0.09
SHOX2-205ENST00000490689 IQGAP2Q13576 1575 aa15.64■□□□□ 0.09
SHOX2-205ENST00000490689 BAG4O95429 457 aaKnown RBP15.64■□□□□ 0.09
SHOX2-205ENST00000490689 TWISTNBQ3B726 338 aaPredicted RBP15.64■□□□□ 0.09
SHOX2-205ENST00000490689 LAMC3Q9Y6N6 1575 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 CUL7Q14999 1698 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 SPC24Q8NBT2 197 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 TCOF1Q13428 1488 aaKnown RBP15.63■□□□□ 0.09
SHOX2-205ENST00000490689 TBC1D9Q6ZT07 1266 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 TSPY26PQ9H489 355 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 VGFO15240 615 aaPredicted RBP15.63■□□□□ 0.09
SHOX2-205ENST00000490689 ARHGAP5Q13017 1502 aa15.63■□□□□ 0.09
SHOX2-205ENST00000490689 FIBPO43427 364 aa15.62■□□□□ 0.09
SHOX2-205ENST00000490689 SMARCA5O60264 1052 aaPredicted RBP15.61■□□□□ 0.09
SHOX2-205ENST00000490689 STAC3Q96MF2 364 aa15.61■□□□□ 0.09
SHOX2-205ENST00000490689 GPRASP1Q5JY77 1395 aa15.61■□□□□ 0.09
SHOX2-205ENST00000490689 PRAG1Q86YV5 1406 aa15.61■□□□□ 0.09
SHOX2-205ENST00000490689 MBD3O95983 291 aa15.61■□□□□ 0.09
SHOX2-205ENST00000490689 GPATCH8Q9UKJ3 1502 aaKnown RBP15.61■□□□□ 0.09
SHOX2-205ENST00000490689 GDPD2Q9HCC8 539 aa15.61■□□□□ 0.09
SHOX2-205ENST00000490689 ZHX1Q9UKY1 873 aaPredicted RBP15.61■□□□□ 0.09
SHOX2-205ENST00000490689 ADGRF5Q8IZF2 1346 aa15.6■□□□□ 0.09
SHOX2-205ENST00000490689 LTV1Q96GA3 475 aaPredicted RBP15.6■□□□□ 0.09
SHOX2-205ENST00000490689 GAS2L2Q8NHY3 880 aa15.59■□□□□ 0.09
SHOX2-205ENST00000490689 IFT57Q9NWB7 429 aa15.59■□□□□ 0.09
SHOX2-205ENST00000490689 UPF3BQ9BZI7 483 aaKnown RBP15.59■□□□□ 0.09
SHOX2-205ENST00000490689 LMOD2Q6P5Q4 547 aa15.59■□□□□ 0.09
SHOX2-205ENST00000490689 NRDCO43847 1150 aa15.58■□□□□ 0.09
SHOX2-205ENST00000490689 CARD14Q9BXL6 1004 aa15.58■□□□□ 0.09
SHOX2-205ENST00000490689 SMC3Q9UQE7 1217 aa15.58■□□□□ 0.09
SHOX2-205ENST00000490689 FKBP5Q13451 457 aaPredicted RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms