RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 UNC5CLQ8IV45 518 aa11.72□□□□□ -0.53
COL9A1-209ENST00000489861 SLIT2O94813 1529 aa11.71□□□□□ -0.53
COL9A1-209ENST00000489861 UTRNP46939 3433 aa11.71□□□□□ -0.53
COL9A1-209ENST00000489861 ZNF784Q8NCA9 323 aaPredicted RBP11.71□□□□□ -0.53
COL9A1-209ENST00000489861 CHGAP10645 457 aaKnown RBP11.7□□□□□ -0.54
COL9A1-209ENST00000489861 KRT27Q7Z3Y8 459 aa11.7□□□□□ -0.54
COL9A1-209ENST00000489861 MYOM3Q5VTT5 1437 aa11.69□□□□□ -0.54
COL9A1-209ENST00000489861 RGPD1P0DJD0 1748 aa11.69□□□□□ -0.54
COL9A1-209ENST00000489861 RPRD2Q5VT52 1461 aaKnown RBP11.69□□□□□ -0.54
COL9A1-209ENST00000489861 ABCC5O15440 1437 aa11.69□□□□□ -0.54
COL9A1-209ENST00000489861 METP08581 1390 aa11.68□□□□□ -0.54
COL9A1-209ENST00000489861 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-209ENST00000489861 TNS1Q9HBL0 1735 aaKnown RBP11.68□□□□□ -0.54
COL9A1-209ENST00000489861 C1QTNF8P60827 252 aa11.67□□□□□ -0.54
COL9A1-209ENST00000489861 PXDNQ92626 1479 aa11.67□□□□□ -0.54
COL9A1-209ENST00000489861 PTPN23Q9H3S7 1636 aa11.65□□□□□ -0.54
COL9A1-209ENST00000489861 CHD4Q14839 1912 aa11.65□□□□□ -0.54
COL9A1-209ENST00000489861 EZH2Q15910 746 aaKnown RBP11.65□□□□□ -0.54
COL9A1-209ENST00000489861 DISP2A7MBM2 1401 aa11.64□□□□□ -0.55
COL9A1-209ENST00000489861 XPCQ01831 940 aaPredicted RBP11.64□□□□□ -0.55
COL9A1-209ENST00000489861 VPS72Q15906 364 aa11.64□□□□□ -0.55
COL9A1-209ENST00000489861 FAM182BQ5T319 152 aa11.64□□□□□ -0.55
COL9A1-209ENST00000489861 PLCH1Q4KWH8 1693 aa11.64□□□□□ -0.55
COL9A1-209ENST00000489861 USP32Q8NFA0 1604 aa11.63□□□□□ -0.55
COL9A1-209ENST00000489861 NWD2Q9ULI1 1742 aa11.62□□□□□ -0.55
COL9A1-209ENST00000489861 E9PCH4 1651 aa11.62□□□□□ -0.55
COL9A1-209ENST00000489861 DCAF8L1A6NGE4 600 aa11.61□□□□□ -0.55
COL9A1-209ENST00000489861 CAMKK2Q96RR4 588 aa11.61□□□□□ -0.55
COL9A1-209ENST00000489861 CHIC2Q9UKJ5 165 aa11.61□□□□□ -0.55
COL9A1-209ENST00000489861 NINLQ9Y2I6 1382 aa11.61□□□□□ -0.55
COL9A1-209ENST00000489861 NPHP3Q7Z494 1330 aa11.6□□□□□ -0.55
COL9A1-209ENST00000489861 DAPK1P53355 1430 aa11.6□□□□□ -0.55
COL9A1-209ENST00000489861 FOXO3O43524 673 aa11.6□□□□□ -0.55
COL9A1-209ENST00000489861 CCDC9Q9Y3X0 531 aaKnown RBP11.6□□□□□ -0.55
COL9A1-209ENST00000489861 NUP188Q5SRE5 1749 aa11.6□□□□□ -0.55
COL9A1-209ENST00000489861 RREB1Q92766 1687 aa11.59□□□□□ -0.55
COL9A1-209ENST00000489861 ADGRL2O95490 1459 aa11.59□□□□□ -0.55
COL9A1-209ENST00000489861 PPP1R1BQ9UD71 204 aaPredicted RBP11.59□□□□□ -0.55
COL9A1-209ENST00000489861 IQGAP3Q86VI3 1631 aa11.59□□□□□ -0.55
COL9A1-209ENST00000489861 ANKRD30AQ9BXX3 1397 aa11.58□□□□□ -0.56
COL9A1-209ENST00000489861 ROBO2Q9HCK4 1378 aa11.58□□□□□ -0.56
COL9A1-209ENST00000489861 A0A0G2JS52 829 aa11.58□□□□□ -0.56
COL9A1-209ENST00000489861 MYT1Q01538 1121 aa11.58□□□□□ -0.56
COL9A1-209ENST00000489861 ESCO1Q5FWF5 840 aa11.58□□□□□ -0.56
COL9A1-209ENST00000489861 FAM98CQ17RN3 349 aaKnown RBP11.57□□□□□ -0.56
COL9A1-209ENST00000489861 KANK4Q5T7N3 995 aaPredicted RBP11.57□□□□□ -0.56
COL9A1-209ENST00000489861 SPON1Q9HCB6 807 aa11.57□□□□□ -0.56
COL9A1-209ENST00000489861 KCNQ2O43526 872 aa11.56□□□□□ -0.56
COL9A1-209ENST00000489861 NRAPQ86VF7 1730 aa11.56□□□□□ -0.56
COL9A1-209ENST00000489861 ABCA3Q99758 1704 aa11.55□□□□□ -0.56
COL9A1-209ENST00000489861 SPATA31A3Q5VYP0 1347 aa11.55□□□□□ -0.56
COL9A1-209ENST00000489861 CABLES1Q8TDN4 633 aa11.54□□□□□ -0.56
COL9A1-209ENST00000489861 ADGRB2O60241 1585 aa11.54□□□□□ -0.56
COL9A1-209ENST00000489861 TRIM37O94972 964 aa11.53□□□□□ -0.56
COL9A1-209ENST00000489861 THSD7AQ9UPZ6 1657 aa11.52□□□□□ -0.56
COL9A1-209ENST00000489861 FAM83GA6ND36 823 aa11.52□□□□□ -0.57
COL9A1-209ENST00000489861 CDC42BPGQ6DT37 1551 aa11.52□□□□□ -0.57
COL9A1-209ENST00000489861 PARD3Q8TEW0 1356 aa11.52□□□□□ -0.57
COL9A1-209ENST00000489861 NRKQ7Z2Y5 1582 aa11.51□□□□□ -0.57
COL9A1-209ENST00000489861 PLEKHG5O94827 1062 aa11.51□□□□□ -0.57
COL9A1-209ENST00000489861 APBA3O96018 575 aa11.51□□□□□ -0.57
COL9A1-209ENST00000489861 ANKRD50Q9ULJ7 1429 aa11.51□□□□□ -0.57
COL9A1-209ENST00000489861 NEXMIFQ5QGS0 1516 aa11.5□□□□□ -0.57
COL9A1-209ENST00000489861 MYOM1P52179 1685 aa11.5□□□□□ -0.57
COL9A1-209ENST00000489861 LRPPRCP42704 1394 aaKnown RBP11.5□□□□□ -0.57
COL9A1-209ENST00000489861 NUTM2FA1L443 756 aa11.49□□□□□ -0.57
COL9A1-209ENST00000489861 ZNF326Q5BKZ1 582 aaKnown RBP11.49□□□□□ -0.57
COL9A1-209ENST00000489861 PRAG1Q86YV5 1406 aa11.49□□□□□ -0.57
COL9A1-209ENST00000489861 CASZ1Q86V15 1759 aa11.49□□□□□ -0.57
COL9A1-209ENST00000489861 HAP1P54257 671 aaPredicted RBP11.48□□□□□ -0.57
COL9A1-209ENST00000489861 NBPF8Q3BBV2 869 aa11.48□□□□□ -0.57
COL9A1-209ENST00000489861 NBPF14Q5TI25 921 aa11.48□□□□□ -0.57
COL9A1-209ENST00000489861 HFM1A2PYH4 1435 aa11.48□□□□□ -0.57
COL9A1-209ENST00000489861 RGPD8O14715 1765 aaPredicted RBP11.48□□□□□ -0.57
COL9A1-209ENST00000489861 KRT28Q7Z3Y7 464 aa11.47□□□□□ -0.57
COL9A1-209ENST00000489861 SPATA31A5Q5VU36 1347 aa11.46□□□□□ -0.57
COL9A1-209ENST00000489861 SPATA31A7Q8IWB4 1347 aa11.46□□□□□ -0.57
COL9A1-209ENST00000489861 GIGYF1O75420 1035 aaPredicted RBP11.46□□□□□ -0.57
COL9A1-209ENST00000489861 FAM196AQ6ZSG2 479 aa11.46□□□□□ -0.57
COL9A1-209ENST00000489861 PDGFDQ9GZP0 370 aaPredicted RBP11.46□□□□□ -0.57
COL9A1-209ENST00000489861 BTG4Q9NY30 223 aa11.46□□□□□ -0.57
COL9A1-209ENST00000489861 KIF1AQ12756 1690 aa11.46□□□□□ -0.58
COL9A1-209ENST00000489861 CCDC144AA2RUR9 1427 aa11.45□□□□□ -0.58
COL9A1-209ENST00000489861 TNS3Q68CZ2 1445 aa11.45□□□□□ -0.58
COL9A1-209ENST00000489861 NAIPQ13075 1403 aa11.44□□□□□ -0.58
COL9A1-209ENST00000489861 FMN2Q9NZ56 1722 aa11.44□□□□□ -0.58
COL9A1-209ENST00000489861 PTGER2P43116 358 aa11.44□□□□□ -0.58
COL9A1-209ENST00000489861 COL14A1Q05707 1796 aaKnown RBP11.44□□□□□ -0.58
COL9A1-209ENST00000489861 SYT17Q9BSW7 474 aa11.43□□□□□ -0.58
COL9A1-209ENST00000489861 FHDC1Q9C0D6 1143 aaPredicted RBP11.42□□□□□ -0.58
COL9A1-209ENST00000489861 SHANK3Q9BYB0 1731 aa11.42□□□□□ -0.58
COL9A1-209ENST00000489861 GOLGB1Q14789 3259 aaKnown RBP11.41□□□□□ -0.58
COL9A1-209ENST00000489861 ZBTB7AO95365 584 aa11.41□□□□□ -0.58
COL9A1-209ENST00000489861 ANO8Q9HCE9 1232 aaPredicted RBP11.41□□□□□ -0.58
COL9A1-209ENST00000489861 CLTCL1P53675 1640 aa11.41□□□□□ -0.58
COL9A1-209ENST00000489861 LMOD2Q6P5Q4 547 aa11.4□□□□□ -0.58
COL9A1-209ENST00000489861 VPS8Q8N3P4 1428 aa11.4□□□□□ -0.58
COL9A1-209ENST00000489861 KIF1BO60333 1816 aa11.39□□□□□ -0.59
COL9A1-209ENST00000489861 WAPLQ7Z5K2 1190 aa11.39□□□□□ -0.59
COL9A1-209ENST00000489861 ATF5Q9Y2D1 282 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms