RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
USP11-211ENST00000489111 AMOTL2Q9Y2J4 779 aa13.74□□□□□ -0.21
USP11-211ENST00000489111 PTPRUQ92729 1446 aa13.73□□□□□ -0.21
USP11-211ENST00000489111 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
USP11-211ENST00000489111 PANK3Q9H999 370 aa13.73□□□□□ -0.21
USP11-211ENST00000489111 ATAD2Q6PL18 1390 aa13.72□□□□□ -0.21
USP11-211ENST00000489111 TMC1Q8TDI8 760 aa13.71□□□□□ -0.21
USP11-211ENST00000489111 CABP2Q9NPB3 220 aa13.71□□□□□ -0.21
USP11-211ENST00000489111 NINLQ9Y2I6 1382 aa13.71□□□□□ -0.22
USP11-211ENST00000489111 KNSTRNQ9Y448 316 aa13.7□□□□□ -0.22
USP11-211ENST00000489111 LMTK3Q96Q04 1460 aa13.69□□□□□ -0.22
USP11-211ENST00000489111 CCER2I3L3R5 266 aa13.69□□□□□ -0.22
USP11-211ENST00000489111 HSPA2P54652 639 aa13.69□□□□□ -0.22
USP11-211ENST00000489111 CDK19Q9BWU1 502 aa13.69□□□□□ -0.22
USP11-211ENST00000489111 PRKRIP1Q9H875 184 aaPredicted RBP13.69□□□□□ -0.22
USP11-211ENST00000489111 KTN1Q86UP2 1357 aaKnown RBP13.69□□□□□ -0.22
USP11-211ENST00000489111 XRN1Q8IZH2 1706 aaKnown RBP13.68□□□□□ -0.22
USP11-211ENST00000489111 WASLO00401 505 aaPredicted RBP13.68□□□□□ -0.22
USP11-211ENST00000489111 KCNA6P17658 529 aa13.68□□□□□ -0.22
USP11-211ENST00000489111 CNGB1Q14028 1251 aaPredicted RBP13.68□□□□□ -0.22
USP11-211ENST00000489111 MYOM1P52179 1685 aa13.67□□□□□ -0.22
USP11-211ENST00000489111 AEBP2Q6ZN18 517 aaPredicted RBP13.67□□□□□ -0.22
USP11-211ENST00000489111 SLC12A5Q9H2X9 1139 aa13.66□□□□□ -0.22
USP11-211ENST00000489111 ADGRB2O60241 1585 aa13.66□□□□□ -0.22
USP11-211ENST00000489111 PER1O15534 1290 aaPredicted RBP13.65□□□□□ -0.22
USP11-211ENST00000489111 RALBP1Q15311 655 aa13.65□□□□□ -0.22
USP11-211ENST00000489111 TERF2IPQ9NYB0 399 aa13.65□□□□□ -0.22
USP11-211ENST00000489111 ANKRD36BQ8N2N9 1353 aa13.65□□□□□ -0.22
USP11-211ENST00000489111 NSD3Q9BZ95 1437 aa13.64□□□□□ -0.23
USP11-211ENST00000489111 CC2D1BQ5T0F9 858 aaKnown RBP13.63□□□□□ -0.23
USP11-211ENST00000489111 HDGFL2Q7Z4V5 671 aaPredicted RBP13.63□□□□□ -0.23
USP11-211ENST00000489111 NPC1L1Q9UHC9 1359 aa13.62□□□□□ -0.23
USP11-211ENST00000489111 NWD1Q149M9 1564 aa13.62□□□□□ -0.23
USP11-211ENST00000489111 NKTRP30414 1462 aaKnown RBP13.61□□□□□ -0.23
USP11-211ENST00000489111 A0A1W2PP64 1363 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 PARD3Q8TEW0 1356 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 C14orf37Q86TY3 774 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 NUDT16Q96DE0 195 aaKnown RBP13.61□□□□□ -0.23
USP11-211ENST00000489111 PPIP5K1Q6PFW1 1433 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 CGNL1Q0VF96 1302 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 MYBBP1AQ9BQG0 1328 aaKnown RBP13.61□□□□□ -0.23
USP11-211ENST00000489111 ATP7BP35670 1465 aa13.61□□□□□ -0.23
USP11-211ENST00000489111 AMER1Q5JTC6 1135 aaPredicted RBP13.6□□□□□ -0.23
USP11-211ENST00000489111 YTHDC1Q96MU7 727 aaKnown RBP13.6□□□□□ -0.23
USP11-211ENST00000489111 CARD14Q9BXL6 1004 aa13.6□□□□□ -0.23
USP11-211ENST00000489111 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
USP11-211ENST00000489111 CABP1Q9NZU7 370 aa13.6□□□□□ -0.23
USP11-211ENST00000489111 CCDC61Q9Y6R9 512 aa13.6□□□□□ -0.23
USP11-211ENST00000489111 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.59□□□□□ -0.23
USP11-211ENST00000489111 ADGRL3Q9HAR2 1447 aa13.59□□□□□ -0.23
USP11-211ENST00000489111 PROSER2Q86WR7 435 aaPredicted RBP13.58□□□□□ -0.24
USP11-211ENST00000489111 PRR36Q9H6K5 1346 aa13.58□□□□□ -0.24
USP11-211ENST00000489111 NSD2O96028 1365 aa13.58□□□□□ -0.24
USP11-211ENST00000489111 ANKARQ7Z5J8 1434 aa13.57□□□□□ -0.24
USP11-211ENST00000489111 NLRP13Q86W25 1043 aa13.57□□□□□ -0.24
USP11-211ENST00000489111 CDC42BPGQ6DT37 1551 aa13.57□□□□□ -0.24
USP11-211ENST00000489111 CHD2O14647 1828 aaKnown RBP13.57□□□□□ -0.24
USP11-211ENST00000489111 BRD4O60885 1362 aaPredicted RBP13.57□□□□□ -0.24
USP11-211ENST00000489111 CD163L1Q9NR16 1453 aa13.56□□□□□ -0.24
USP11-211ENST00000489111 NUTM2FA1L443 756 aa13.56□□□□□ -0.24
USP11-211ENST00000489111 USP32Q8NFA0 1604 aa13.56□□□□□ -0.24
USP11-211ENST00000489111 MORC1Q86VD1 984 aa13.54□□□□□ -0.24
USP11-211ENST00000489111 RBM33Q96EV2 1170 aaKnown RBP13.54□□□□□ -0.24
USP11-211ENST00000489111 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
USP11-211ENST00000489111 CPSF1Q10570 1443 aaKnown RBP13.54□□□□□ -0.24
USP11-211ENST00000489111 EDC4Q6P2E9 1401 aaKnown RBP13.54□□□□□ -0.24
USP11-211ENST00000489111 PLEKHG3A1L390 1219 aa13.53□□□□□ -0.24
USP11-211ENST00000489111 TMEM94Q12767 1356 aa13.53□□□□□ -0.24
USP11-211ENST00000489111 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
USP11-211ENST00000489111 ZNF692Q9BU19 519 aaPredicted RBP13.52□□□□□ -0.25
USP11-211ENST00000489111 NALCNQ8IZF0 1738 aa13.52□□□□□ -0.25
USP11-211ENST00000489111 TOPAZ1Q8N9V7 1692 aa13.51□□□□□ -0.25
USP11-211ENST00000489111 NCOA3Q9Y6Q9 1424 aa13.51□□□□□ -0.25
USP11-211ENST00000489111 ACEP12821 1306 aa13.51□□□□□ -0.25
USP11-211ENST00000489111 PPP2R1AP30153 589 aa13.51□□□□□ -0.25
USP11-211ENST00000489111 NGDNQ8NEJ9 315 aaKnown RBP13.51□□□□□ -0.25
USP11-211ENST00000489111 STRCQ7RTU9 1775 aa13.5□□□□□ -0.25
USP11-211ENST00000489111 CENPBP07199 599 aaPredicted RBP13.5□□□□□ -0.25
USP11-211ENST00000489111 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP11-211ENST00000489111 FMN2Q9NZ56 1722 aa13.5□□□□□ -0.25
USP11-211ENST00000489111 DCCP43146 1447 aa13.49□□□□□ -0.25
USP11-211ENST00000489111 FAM9BQ8IZU0 186 aa13.49□□□□□ -0.25
USP11-211ENST00000489111 PMFBP1Q8TBY8 1022 aa13.49□□□□□ -0.25
USP11-211ENST00000489111 GGNBP2Q9H3C7 697 aa13.49□□□□□ -0.25
USP11-211ENST00000489111 C19orf44Q9H6X5 657 aa13.49□□□□□ -0.25
USP11-211ENST00000489111 USP6P35125 1406 aa13.48□□□□□ -0.25
USP11-211ENST00000489111 POLR3AO14802 1390 aaPredicted RBP13.48□□□□□ -0.25
USP11-211ENST00000489111 MSH6P52701 1360 aa13.48□□□□□ -0.25
USP11-211ENST00000489111 ITSN1Q15811 1721 aa13.48□□□□□ -0.25
USP11-211ENST00000489111 ZNF335Q9H4Z2 1342 aaPredicted RBP13.48□□□□□ -0.25
USP11-211ENST00000489111 ATF3P18847 181 aa13.48□□□□□ -0.25
USP11-211ENST00000489111 TNNT2P45379 298 aaPredicted RBP13.48□□□□□ -0.25
USP11-211ENST00000489111 FYB1O15117 783 aa13.47□□□□□ -0.25
USP11-211ENST00000489111 PHF8Q9UPP1 1060 aa13.47□□□□□ -0.25
USP11-211ENST00000489111 ESCO1Q5FWF5 840 aa13.46□□□□□ -0.25
USP11-211ENST00000489111 TTC21BQ7Z4L5 1316 aa13.45□□□□□ -0.26
USP11-211ENST00000489111 CADPS2Q86UW7 1296 aa13.45□□□□□ -0.26
USP11-211ENST00000489111 NME9Q86XW9 330 aa13.45□□□□□ -0.26
USP11-211ENST00000489111 COG3Q96JB2 828 aa13.45□□□□□ -0.26
USP11-211ENST00000489111 LRRC7Q96NW7 1537 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms