RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SLC6A16Q9GZN6 736 aa8.67□□□□□ -1.02
RFC4-213ENST00000489028 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.67□□□□□ -1.02
RFC4-213ENST00000489028 LIMD1Q9UGP4 676 aa8.67□□□□□ -1.02
RFC4-213ENST00000489028 PCDHB15Q9Y5E8 787 aa8.67□□□□□ -1.02
RFC4-213ENST00000489028 RNF223E7ERA6 249 aa8.66□□□□□ -1.02
RFC4-213ENST00000489028 SPTLC1O15269 473 aa8.66□□□□□ -1.02
RFC4-213ENST00000489028 RIC3Q7Z5B4 369 aa8.65□□□□□ -1.02
RFC4-213ENST00000489028 DIXDC1Q155Q3 683 aa8.64□□□□□ -1.03
RFC4-213ENST00000489028 MSS51Q4VC12 460 aa8.64□□□□□ -1.03
RFC4-213ENST00000489028 DDRGK1Q96HY6 314 aa8.64□□□□□ -1.03
RFC4-213ENST00000489028 USB1Q9BQ65 265 aaKnown RBP8.64□□□□□ -1.03
RFC4-213ENST00000489028 GJA5P36382 358 aa8.63□□□□□ -1.03
RFC4-213ENST00000489028 EMID1Q96A84 441 aaPredicted RBP8.63□□□□□ -1.03
RFC4-213ENST00000489028 POLR3EQ9NVU0 708 aa8.63□□□□□ -1.03
RFC4-213ENST00000489028 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
RFC4-213ENST00000489028 CSPP1Q1MSJ5 1256 aa8.62□□□□□ -1.03
RFC4-213ENST00000489028 PLA2G2CQ5R387 149 aa8.62□□□□□ -1.03
RFC4-213ENST00000489028 CABLES1Q8TDN4 633 aa8.62□□□□□ -1.03
RFC4-213ENST00000489028 GGCXP38435 758 aa8.61□□□□□ -1.03
RFC4-213ENST00000489028 CLK2P49760 499 aaKnown RBP8.61□□□□□ -1.03
RFC4-213ENST00000489028 QPCTQ16769 361 aa8.61□□□□□ -1.03
RFC4-213ENST00000489028 SH3D19Q5HYK7 790 aa8.61□□□□□ -1.03
RFC4-213ENST00000489028 FBXO31Q5XUX0 539 aaPredicted RBP8.61□□□□□ -1.03
RFC4-213ENST00000489028 RETREG3Q86VR2 466 aa8.61□□□□□ -1.03
RFC4-213ENST00000489028 IL27Q8NEV9 243 aa8.61□□□□□ -1.03
RFC4-213ENST00000489028 DXOO77932 396 aaKnown RBP8.6□□□□□ -1.03
RFC4-213ENST00000489028 HRCP23327 699 aa8.6□□□□□ -1.03
RFC4-213ENST00000489028 MMP16P51512 607 aa8.6□□□□□ -1.03
RFC4-213ENST00000489028 ANKLE1Q8NAG6 615 aa8.6□□□□□ -1.03
RFC4-213ENST00000489028 RSPH6AQ9H0K4 717 aa8.6□□□□□ -1.03
RFC4-213ENST00000489028 MTMR2Q13614 643 aa8.59□□□□□ -1.03
RFC4-213ENST00000489028 PROCA1Q8NCQ7 364 aaPredicted RBP8.59□□□□□ -1.03
RFC4-213ENST00000489028 CFAP99D6REC4 459 aa8.58□□□□□ -1.04
RFC4-213ENST00000489028 LILRB3O75022 631 aa8.58□□□□□ -1.04
RFC4-213ENST00000489028 RGS20O76081 388 aa8.58□□□□□ -1.04
RFC4-213ENST00000489028 SKIV2LQ15477 1246 aaKnown RBP8.58□□□□□ -1.04
RFC4-213ENST00000489028 TUSC1Q2TAM9 212 aa8.58□□□□□ -1.04
RFC4-213ENST00000489028 PRR7Q8TB68 274 aa8.58□□□□□ -1.04
RFC4-213ENST00000489028 FCF1Q9Y324 198 aaKnown RBP8.58□□□□□ -1.04
RFC4-213ENST00000489028 JUNDP17535 347 aa8.57□□□□□ -1.04
RFC4-213ENST00000489028 RTL5Q5HYW3 569 aaPredicted RBP8.57□□□□□ -1.04
RFC4-213ENST00000489028 PRPF38BQ5VTL8 546 aaKnown RBP8.57□□□□□ -1.04
RFC4-213ENST00000489028 PRKD2Q9BZL6 878 aa8.57□□□□□ -1.04
RFC4-213ENST00000489028 ZBTB3Q9H5J0 574 aa8.57□□□□□ -1.04
RFC4-213ENST00000489028 LIAT1Q6ZQX7 453 aa8.56□□□□□ -1.04
RFC4-213ENST00000489028 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.56□□□□□ -1.04
RFC4-213ENST00000489028 SPDYE5A6NIY4 337 aa8.54□□□□□ -1.04
RFC4-213ENST00000489028 SLC19A1P41440 591 aa8.53□□□□□ -1.04
RFC4-213ENST00000489028 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
RFC4-213ENST00000489028 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
RFC4-213ENST00000489028 NUTM2DQ5VT03 806 aaPredicted RBP8.52□□□□□ -1.05
RFC4-213ENST00000489028 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
RFC4-213ENST00000489028 V9GY48 417 aaPredicted RBP8.52□□□□□ -1.05
RFC4-213ENST00000489028 DESI1Q6ICB0 168 aa8.51□□□□□ -1.05
RFC4-213ENST00000489028 GOPCQ9HD26 462 aa8.51□□□□□ -1.05
RFC4-213ENST00000489028 PER1O15534 1290 aaPredicted RBP8.5□□□□□ -1.05
RFC4-213ENST00000489028 PTCRAQ6ISU1 281 aaPredicted RBP8.5□□□□□ -1.05
RFC4-213ENST00000489028 CCDC24Q8N4L8 307 aa8.5□□□□□ -1.05
RFC4-213ENST00000489028 NUDT12Q9BQG2 462 aa8.5□□□□□ -1.05
RFC4-213ENST00000489028 PTPRNQ16849 979 aa8.49□□□□□ -1.05
RFC4-213ENST00000489028 SPRYD7Q5W111 196 aa8.49□□□□□ -1.05
RFC4-213ENST00000489028 PPP2R2DQ66LE6 453 aa8.49□□□□□ -1.05
RFC4-213ENST00000489028 LYPD8Q6UX82 237 aa8.49□□□□□ -1.05
RFC4-213ENST00000489028 CCNYL3P0C7X3 344 aa8.48□□□□□ -1.05
RFC4-213ENST00000489028 TSC1Q92574 1164 aa8.48□□□□□ -1.05
RFC4-213ENST00000489028 PCMTD1Q96MG8 357 aaPredicted RBP8.48□□□□□ -1.05
RFC4-213ENST00000489028 RPIAP49247 311 aa8.47□□□□□ -1.05
RFC4-213ENST00000489028 ATP1B4Q9UN42 357 aaPredicted RBP8.47□□□□□ -1.05
RFC4-213ENST00000489028 CTDSPL2Q05D32 466 aa8.46□□□□□ -1.06
RFC4-213ENST00000489028 TRIM67Q6ZTA4 783 aa8.46□□□□□ -1.06
RFC4-213ENST00000489028 EVA1BQ9NVM1 165 aa8.46□□□□□ -1.06
RFC4-213ENST00000489028 F12P00748 615 aaPredicted RBP8.45□□□□□ -1.06
RFC4-213ENST00000489028 RFC5P40937 340 aa8.45□□□□□ -1.06
RFC4-213ENST00000489028 TRIM32Q13049 653 aa8.45□□□□□ -1.06
RFC4-213ENST00000489028 ZNF697Q5TEC3 545 aa8.45□□□□□ -1.06
RFC4-213ENST00000489028 ZNF598Q86UK7 904 aaKnown RBP8.45□□□□□ -1.06
RFC4-213ENST00000489028 MAP10Q9P2G4 905 aa8.45□□□□□ -1.06
RFC4-213ENST00000489028 KCNH2Q12809 1159 aa8.44□□□□□ -1.06
RFC4-213ENST00000489028 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
RFC4-213ENST00000489028 ZBTB24O43167 697 aaPredicted RBP8.43□□□□□ -1.06
RFC4-213ENST00000489028 LRRN4Q8WUT4 740 aa8.43□□□□□ -1.06
RFC4-213ENST00000489028 AP1G2O75843 785 aa8.42□□□□□ -1.06
RFC4-213ENST00000489028 SKOR1P84550 965 aa8.42□□□□□ -1.06
RFC4-213ENST00000489028 UNC93B1Q9H1C4 597 aa8.42□□□□□ -1.06
RFC4-213ENST00000489028 PKD2L1Q9P0L9 805 aa8.42□□□□□ -1.06
RFC4-213ENST00000489028 GDF9O60383 454 aa8.41□□□□□ -1.06
RFC4-213ENST00000489028 CD2BP2O95400 341 aaKnown RBP8.41□□□□□ -1.06
RFC4-213ENST00000489028 CTHP32929 405 aa8.41□□□□□ -1.06
RFC4-213ENST00000489028 TNFRSF10AO00220 468 aa8.4□□□□□ -1.06
RFC4-213ENST00000489028 IRX2Q9BZI1 471 aaPredicted RBP8.4□□□□□ -1.06
RFC4-213ENST00000489028 USP17L8P0C7I0 530 aa8.39□□□□□ -1.07
RFC4-213ENST00000489028 FOXC1Q12948 553 aa8.39□□□□□ -1.07
RFC4-213ENST00000489028 LINC01559Q495D7 138 aa8.39□□□□□ -1.07
RFC4-213ENST00000489028 HMX1Q9NP08 348 aaPredicted RBP8.39□□□□□ -1.07
RFC4-213ENST00000489028 PDZRN3Q9UPQ7 1066 aa8.39□□□□□ -1.07
RFC4-213ENST00000489028 SH3BP2P78314 561 aa8.38□□□□□ -1.07
RFC4-213ENST00000489028 BAP1Q92560 729 aa8.38□□□□□ -1.07
RFC4-213ENST00000489028 GFRA3O60609 400 aa8.37□□□□□ -1.07
RFC4-213ENST00000489028 EPS8L1Q8TE68 723 aa8.37□□□□□ -1.07
RFC4-213ENST00000489028 WNT7AO00755 349 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms