RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	USB1	Q9BQ65	265 aa	Known RBP	11.35	□□□□□ -0.59
PTPN4-212	ENST00000488896	ANKLE1	Q8NAG6	615 aa		11.33	□□□□□ -0.6
PTPN4-212	ENST00000488896	DIXDC1	Q155Q3	683 aa		11.32	□□□□□ -0.6
PTPN4-212	ENST00000488896	FCF1	Q9Y324	198 aa	Known RBP	11.32	□□□□□ -0.6
PTPN4-212	ENST00000488896	CSPP1	Q1MSJ5	1256 aa		11.31	□□□□□ -0.6
PTPN4-212	ENST00000488896	MSS51	Q4VC12	460 aa		11.31	□□□□□ -0.6
PTPN4-212	ENST00000488896	PRKCSH	P14314	528 aa	Predicted RBP	11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	SLC19A1	P41440	591 aa		11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	NEUROD2	Q15784	382 aa		11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	PLA2G2C	Q5R387	149 aa		11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	RIC3	Q7Z5B4	369 aa		11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	FAM117A	Q9C073	453 aa		11.3	□□□□□ -0.6
PTPN4-212	ENST00000488896	PCDHB15	Q9Y5E8	787 aa		11.29	□□□□□ -0.6
PTPN4-212	ENST00000488896	MYSM1	Q5VVJ2	828 aa		11.28	□□□□□ -0.6
PTPN4-212	ENST00000488896	LIAT1	Q6ZQX7	453 aa		11.28	□□□□□ -0.6
PTPN4-212	ENST00000488896	EMID1	Q96A84	441 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN4-212	ENST00000488896		V9GY48	417 aa	Predicted RBP	11.28	□□□□□ -0.6
PTPN4-212	ENST00000488896	RETREG3	Q86VR2	466 aa		11.27	□□□□□ -0.61
PTPN4-212	ENST00000488896	POLR3E	Q9NVU0	708 aa		11.27	□□□□□ -0.61
PTPN4-212	ENST00000488896	SPTLC1	O15269	473 aa		11.26	□□□□□ -0.61
PTPN4-212	ENST00000488896	MTMR2	Q13614	643 aa		11.26	□□□□□ -0.61
PTPN4-212	ENST00000488896	CCDC24	Q8N4L8	307 aa		11.26	□□□□□ -0.61
PTPN4-212	ENST00000488896	LIMD1	Q9UGP4	676 aa		11.26	□□□□□ -0.61
PTPN4-212	ENST00000488896	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.26	□□□□□ -0.61
PTPN4-212	ENST00000488896	MMP16	P51512	607 aa		11.25	□□□□□ -0.61
PTPN4-212	ENST00000488896	IRX2	Q9BZI1	471 aa	Predicted RBP	11.25	□□□□□ -0.61
PTPN4-212	ENST00000488896	DXO	O77932	396 aa	Known RBP	11.24	□□□□□ -0.61
PTPN4-212	ENST00000488896	PRR7	Q8TB68	274 aa		11.24	□□□□□ -0.61
PTPN4-212	ENST00000488896	CABLES1	Q8TDN4	633 aa		11.24	□□□□□ -0.61
PTPN4-212	ENST00000488896	JUND	P17535	347 aa		11.23	□□□□□ -0.61
PTPN4-212	ENST00000488896	DDRGK1	Q96HY6	314 aa		11.23	□□□□□ -0.61
PTPN4-212	ENST00000488896	RSPH6A	Q9H0K4	717 aa		11.23	□□□□□ -0.61
PTPN4-212	ENST00000488896	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	NUTM2E	B1AL46	878 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	HRC	P23327	699 aa		11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	GJA5	P36382	358 aa		11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN4-212	ENST00000488896	PLEKHG3	A1L390	1219 aa		11.21	□□□□□ -0.61
PTPN4-212	ENST00000488896	CLK2	P49760	499 aa	Known RBP	11.21	□□□□□ -0.61
PTPN4-212	ENST00000488896	BRPF1	P55201	1214 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN4-212	ENST00000488896	SPRYD7	Q5W111	196 aa		11.21	□□□□□ -0.61
PTPN4-212	ENST00000488896	ZBTB3	Q9H5J0	574 aa		11.21	□□□□□ -0.61
PTPN4-212	ENST00000488896	ZBTB24	O43167	697 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN4-212	ENST00000488896	QPCT	Q16769	361 aa		11.2	□□□□□ -0.62
PTPN4-212	ENST00000488896	TSC1	Q92574	1164 aa		11.2	□□□□□ -0.62
PTPN4-212	ENST00000488896	SPDYE5	A6NIY4	337 aa		11.19	□□□□□ -0.62
PTPN4-212	ENST00000488896	ZNF697	Q5TEC3	545 aa		11.19	□□□□□ -0.62
PTPN4-212	ENST00000488896	IL27	Q8NEV9	243 aa		11.19	□□□□□ -0.62
PTPN4-212	ENST00000488896	CFAP99	D6REC4	459 aa		11.18	□□□□□ -0.62
PTPN4-212	ENST00000488896	ZNF598	Q86UK7	904 aa	Known RBP	11.18	□□□□□ -0.62
PTPN4-212	ENST00000488896	GFRA3	O60609	400 aa		11.17	□□□□□ -0.62
PTPN4-212	ENST00000488896	PRPF38B	Q5VTL8	546 aa	Known RBP	11.17	□□□□□ -0.62
PTPN4-212	ENST00000488896	NUDT12	Q9BQG2	462 aa		11.17	□□□□□ -0.62
PTPN4-212	ENST00000488896	CD2BP2	O95400	341 aa	Known RBP	11.16	□□□□□ -0.62
PTPN4-212	ENST00000488896	RPIA	P49247	311 aa		11.16	□□□□□ -0.62
PTPN4-212	ENST00000488896	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN4-212	ENST00000488896	PDZRN3	Q9UPQ7	1066 aa		11.16	□□□□□ -0.62
PTPN4-212	ENST00000488896	FOXC1	Q12948	553 aa		11.15	□□□□□ -0.62
PTPN4-212	ENST00000488896	SKIV2L	Q15477	1246 aa	Known RBP	11.15	□□□□□ -0.62
PTPN4-212	ENST00000488896	SH3D19	Q5HYK7	790 aa		11.15	□□□□□ -0.62
PTPN4-212	ENST00000488896	RTL5	Q5HYW3	569 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN4-212	ENST00000488896	TNFRSF10A	O00220	468 aa		11.14	□□□□□ -0.63
PTPN4-212	ENST00000488896	LILRB3	O75022	631 aa		11.14	□□□□□ -0.63
PTPN4-212	ENST00000488896	CCNYL3	P0C7X3	344 aa		11.13	□□□□□ -0.63
PTPN4-212	ENST00000488896	TRIM32	Q13049	653 aa		11.12	□□□□□ -0.63
PTPN4-212	ENST00000488896	PTPRN	Q16849	979 aa		11.12	□□□□□ -0.63
PTPN4-212	ENST00000488896	TUSC1	Q2TAM9	212 aa		11.12	□□□□□ -0.63
PTPN4-212	ENST00000488896	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN4-212	ENST00000488896	TRIM67	Q6ZTA4	783 aa		11.11	□□□□□ -0.63
PTPN4-212	ENST00000488896	CTH	P32929	405 aa		11.1	□□□□□ -0.63
PTPN4-212	ENST00000488896	DESI1	Q6ICB0	168 aa		11.1	□□□□□ -0.63
PTPN4-212	ENST00000488896	LYPD8	Q6UX82	237 aa		11.09	□□□□□ -0.63
PTPN4-212	ENST00000488896		Q6ZNB5	142 aa		11.09	□□□□□ -0.63
PTPN4-212	ENST00000488896	PER1	O15534	1290 aa	Predicted RBP	11.08	□□□□□ -0.64
PTPN4-212	ENST00000488896	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.08	□□□□□ -0.64
PTPN4-212	ENST00000488896	EVA1B	Q9NVM1	165 aa		11.08	□□□□□ -0.64
PTPN4-212	ENST00000488896	NRG2	O14511	850 aa	Predicted RBP	11.07	□□□□□ -0.64
PTPN4-212	ENST00000488896	LAPTM4A	Q15012	233 aa		11.07	□□□□□ -0.64
PTPN4-212	ENST00000488896	HELB	Q8NG08	1087 aa	Predicted RBP	11.07	□□□□□ -0.64
PTPN4-212	ENST00000488896	PKD2L1	Q9P0L9	805 aa		11.07	□□□□□ -0.64
PTPN4-212	ENST00000488896	GDF9	O60383	454 aa		11.06	□□□□□ -0.64
PTPN4-212	ENST00000488896	KCNH2	Q12809	1159 aa		11.06	□□□□□ -0.64
PTPN4-212	ENST00000488896	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.06	□□□□□ -0.64
PTPN4-212	ENST00000488896	UNC93B1	Q9H1C4	597 aa		11.06	□□□□□ -0.64
PTPN4-212	ENST00000488896	MAP10	Q9P2G4	905 aa		11.06	□□□□□ -0.64
PTPN4-212	ENST00000488896	LINC01559	Q495D7	138 aa		11.05	□□□□□ -0.64
PTPN4-212	ENST00000488896	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.05	□□□□□ -0.64
PTPN4-212	ENST00000488896	CTDSPL2	Q05D32	466 aa		11.04	□□□□□ -0.64
PTPN4-212	ENST00000488896	SKOR1	P84550	965 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	PRR20E	P86478	221 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	PRR20C	P86479	221 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	PRR20D	P86480	221 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	PRR20B	P86481	221 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	PRR20A	P86496	221 aa		11.03	□□□□□ -0.64
PTPN4-212	ENST00000488896	AP1G2	O75843	785 aa		11.02	□□□□□ -0.65
PTPN4-212	ENST00000488896	BAP1	Q92560	729 aa		11.02	□□□□□ -0.65
PTPN4-212	ENST00000488896	RC3H1	Q5TC82	1133 aa	Known RBP	11.01	□□□□□ -0.65
PTPN4-212	ENST00000488896	CYP4X1	Q8N118	509 aa		11.01	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms