RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 POGKQ9P215 609 aa27.3■■□□□ 1.96
CCM2-216ENST00000488727 QRICH2Q9H0J4 1663 aa27.29■■□□□ 1.96
CCM2-216ENST00000488727 C14orf37Q86TY3 774 aa27.28■■□□□ 1.96
CCM2-216ENST00000488727 EIF3AQ14152 1382 aaKnown RBP27.26■■□□□ 1.96
CCM2-216ENST00000488727 MSH6P52701 1360 aa27.26■■□□□ 1.95
CCM2-216ENST00000488727 CENPJQ9HC77 1338 aaPredicted RBP27.25■■□□□ 1.95
CCM2-216ENST00000488727 C19orf44Q9H6X5 657 aa27.25■■□□□ 1.95
CCM2-216ENST00000488727 USP47Q96K76 1375 aa27.25■■□□□ 1.95
CCM2-216ENST00000488727 ADGRB2O60241 1585 aa27.24■■□□□ 1.95
CCM2-216ENST00000488727 CDC42BPGQ6DT37 1551 aa27.23■■□□□ 1.95
CCM2-216ENST00000488727 MINK1Q8N4C8 1332 aaPredicted RBP27.23■■□□□ 1.95
CCM2-216ENST00000488727 DCCP43146 1447 aa27.21■■□□□ 1.95
CCM2-216ENST00000488727 HIRIP3Q9BW71 556 aaPredicted RBP27.21■■□□□ 1.95
CCM2-216ENST00000488727 ST20-MTHFSA0A0A6YYL1 179 aa27.19■■□□□ 1.94
CCM2-216ENST00000488727 FMN2Q9NZ56 1722 aa27.17■■□□□ 1.94
CCM2-216ENST00000488727 ATF3P18847 181 aa27.16■■□□□ 1.94
CCM2-216ENST00000488727 SBNO2Q9Y2G9 1366 aa27.15■■□□□ 1.94
CCM2-216ENST00000488727 TULP4Q9NRJ4 1543 aa27.15■■□□□ 1.94
CCM2-216ENST00000488727 CADPS2Q86UW7 1296 aa27.14■■□□□ 1.94
CCM2-216ENST00000488727 MST1RQ04912 1400 aa27.13■■□□□ 1.93
CCM2-216ENST00000488727 TESK2Q96S53 571 aa27.13■■□□□ 1.93
CCM2-216ENST00000488727 EIF4G2P78344 907 aaKnown RBP eCLIP27.13■■□□□ 1.93
CCM2-216ENST00000488727 UBAP1LF5GYI3 381 aa27.11■■□□□ 1.93
CCM2-216ENST00000488727 WASLO00401 505 aaPredicted RBP27.11■■□□□ 1.93
CCM2-216ENST00000488727 HSPA5P11021 654 aaKnown RBP27.11■■□□□ 1.93
CCM2-216ENST00000488727 USP32Q8NFA0 1604 aa27.1■■□□□ 1.93
CCM2-216ENST00000488727 RGPD8O14715 1765 aaPredicted RBP27.1■■□□□ 1.93
CCM2-216ENST00000488727 TOM1O60784 492 aa27.09■■□□□ 1.93
CCM2-216ENST00000488727 NUTM2FA1L443 756 aa27.08■■□□□ 1.93
CCM2-216ENST00000488727 SLAIN2Q9P270 581 aa27.08■■□□□ 1.93
CCM2-216ENST00000488727 CDK19Q9BWU1 502 aa27.07■■□□□ 1.92
CCM2-216ENST00000488727 C1orf167Q5SNV9 1468 aa27.07■■□□□ 1.92
CCM2-216ENST00000488727 EVC2Q86UK5 1308 aa27.04■■□□□ 1.92
CCM2-216ENST00000488727 PRR36Q9H6K5 1346 aa27.04■■□□□ 1.92
CCM2-216ENST00000488727 ATP7BP35670 1465 aa27.04■■□□□ 1.92
CCM2-216ENST00000488727 MIER1Q8N108 512 aa27.03■■□□□ 1.92
CCM2-216ENST00000488727 ANKARQ7Z5J8 1434 aa27.03■■□□□ 1.92
CCM2-216ENST00000488727 ROBO1Q9Y6N7 1651 aa27.03■■□□□ 1.92
CCM2-216ENST00000488727 DISP3Q9P2K9 1392 aa27.02■■□□□ 1.92
CCM2-216ENST00000488727 CENPBP07199 599 aaPredicted RBP27.02■■□□□ 1.92
CCM2-216ENST00000488727 PIP4K2BP78356 416 aa27.02■■□□□ 1.92
CCM2-216ENST00000488727 CABP2Q9NPB3 220 aa27.02■■□□□ 1.92
CCM2-216ENST00000488727 SRPK2P78362 688 aaKnown RBP27.01■■□□□ 1.91
CCM2-216ENST00000488727 TOPAZ1Q8N9V7 1692 aa27.01■■□□□ 1.91
CCM2-216ENST00000488727 ORAI2Q96SN7 254 aa26.99■■□□□ 1.91
CCM2-216ENST00000488727 ITSN1Q15811 1721 aa26.99■■□□□ 1.91
CCM2-216ENST00000488727 BRINP3Q76B58 766 aa26.98■■□□□ 1.91
CCM2-216ENST00000488727 NUDT16Q96DE0 195 aaKnown RBP26.98■■□□□ 1.91
CCM2-216ENST00000488727 SCAF1Q9H7N4 1312 aaKnown RBP26.98■■□□□ 1.91
CCM2-216ENST00000488727 TMF1P82094 1093 aa26.96■■□□□ 1.91
CCM2-216ENST00000488727 ESCO1Q5FWF5 840 aa26.96■■□□□ 1.91
CCM2-216ENST00000488727 SLC24A1O60721 1099 aa26.96■■□□□ 1.91
CCM2-216ENST00000488727 FBXO41Q8TF61 875 aa26.93■■□□□ 1.9
CCM2-216ENST00000488727 KIF1AQ12756 1690 aa26.93■■□□□ 1.9
CCM2-216ENST00000488727 CCDC61Q9Y6R9 512 aa26.92■■□□□ 1.9
CCM2-216ENST00000488727 NHSL1Q5SYE7 1610 aa26.91■■□□□ 1.9
CCM2-216ENST00000488727 ATAD2Q6PL18 1390 aa26.91■■□□□ 1.9
CCM2-216ENST00000488727 C11orf95C9JLR9 678 aaPredicted RBP26.9■■□□□ 1.9
CCM2-216ENST00000488727 PPIP5K1Q6PFW1 1433 aa26.9■■□□□ 1.9
CCM2-216ENST00000488727 PUS7Q96PZ0 661 aaKnown RBP26.9■■□□□ 1.9
CCM2-216ENST00000488727 PHF8Q9UPP1 1060 aa26.9■■□□□ 1.9
CCM2-216ENST00000488727 PMFBP1Q8TBY8 1022 aa26.89■■□□□ 1.9
CCM2-216ENST00000488727 DDX17Q92841 729 aaKnown RBP26.87■■□□□ 1.89
CCM2-216ENST00000488727 AHDC1Q5TGY3 1603 aaPredicted RBP26.87■■□□□ 1.89
CCM2-216ENST00000488727 CABP1Q9NZU7 370 aa26.86■■□□□ 1.89
CCM2-216ENST00000488727 MYOM1P52179 1685 aa26.86■■□□□ 1.89
CCM2-216ENST00000488727 FOXO3O43524 673 aa26.85■■□□□ 1.89
CCM2-216ENST00000488727 CDCA8Q53HL2 280 aa26.85■■□□□ 1.89
CCM2-216ENST00000488727 PLEKHG3A1L390 1219 aa26.85■■□□□ 1.89
CCM2-216ENST00000488727 PHLPP1O60346 1717 aa26.84■■□□□ 1.89
CCM2-216ENST00000488727 POLR3AO14802 1390 aaPredicted RBP26.83■■□□□ 1.88
CCM2-216ENST00000488727 ACEP12821 1306 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 COL16A1Q07092 1604 aaPredicted RBP26.81■■□□□ 1.88
CCM2-216ENST00000488727 PXDNQ92626 1479 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 SLC12A5Q9H2X9 1139 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 KIF7Q2M1P5 1343 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 NPHP3Q7Z494 1330 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 AKAP12Q02952 1782 aa26.81■■□□□ 1.88
CCM2-216ENST00000488727 TMC1Q8TDI8 760 aa26.8■■□□□ 1.88
CCM2-216ENST00000488727 CD163L1Q9NR16 1453 aa26.8■■□□□ 1.88
CCM2-216ENST00000488727 XPCQ01831 940 aaPredicted RBP26.79■■□□□ 1.88
CCM2-216ENST00000488727 NGDNQ8NEJ9 315 aaKnown RBP26.79■■□□□ 1.88
CCM2-216ENST00000488727 POLR3GLQ9BT43 218 aa26.79■■□□□ 1.88
CCM2-216ENST00000488727 HSPA1LP34931 641 aa26.78■■□□□ 1.88
CCM2-216ENST00000488727 NINLQ9Y2I6 1382 aa26.78■■□□□ 1.88
CCM2-216ENST00000488727 SOS2Q07890 1332 aaPredicted RBP26.77■■□□□ 1.88
CCM2-216ENST00000488727 CPSF1Q10570 1443 aaKnown RBP26.76■■□□□ 1.88
CCM2-216ENST00000488727 WASHC2AQ641Q2 1341 aa26.76■■□□□ 1.88
CCM2-216ENST00000488727 TRPM3Q9HCF6 1732 aaPredicted RBP26.76■■□□□ 1.88
CCM2-216ENST00000488727 CCDC7Q96M83 1385 aa26.76■■□□□ 1.87
CCM2-216ENST00000488727 MON2Q7Z3U7 1717 aa26.75■■□□□ 1.87
CCM2-216ENST00000488727 PSME1Q06323 249 aa26.74■■□□□ 1.87
CCM2-216ENST00000488727 KRT28Q7Z3Y7 464 aa26.74■■□□□ 1.87
CCM2-216ENST00000488727 A0A1W2PP64 1363 aa26.73■■□□□ 1.87
CCM2-216ENST00000488727 USP6P35125 1406 aa26.72■■□□□ 1.87
CCM2-216ENST00000488727 NRKQ7Z2Y5 1582 aa26.72■■□□□ 1.87
CCM2-216ENST00000488727 ANKRD36BQ8N2N9 1353 aa26.7■■□□□ 1.86
CCM2-216ENST00000488727 ILDR1Q86SU0 546 aaPredicted RBP26.69■■□□□ 1.86
CCM2-216ENST00000488727 TERF2IPQ9NYB0 399 aa26.69■■□□□ 1.86
CCM2-216ENST00000488727 KTN1Q86UP2 1357 aaKnown RBP26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms