RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MINK1Q8N4C8 1332 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-230ENST00000488543 PLEKHH1Q9ULM0 1364 aa16.56■□□□□ 0.24
HDAC6-230ENST00000488543 LRPPRCP42704 1394 aaKnown RBP16.55■□□□□ 0.24
HDAC6-230ENST00000488543 PARD3Q8TEW0 1356 aa16.55■□□□□ 0.24
HDAC6-230ENST00000488543 NCKAP5LQ9HCH0 1330 aa16.54■□□□□ 0.24
HDAC6-230ENST00000488543 HSPA2P54652 639 aa16.54■□□□□ 0.24
HDAC6-230ENST00000488543 ABCC11Q96J66 1382 aa16.53■□□□□ 0.24
HDAC6-230ENST00000488543 RALBP1Q15311 655 aa16.53■□□□□ 0.24
HDAC6-230ENST00000488543 TBX22Q9Y458 520 aa16.53■□□□□ 0.24
HDAC6-230ENST00000488543 MED14O60244 1454 aa16.53■□□□□ 0.24
HDAC6-230ENST00000488543 ZNF142P52746 1687 aaPredicted RBP16.53■□□□□ 0.24
HDAC6-230ENST00000488543 PRKCSHP14314 528 aaPredicted RBP16.52■□□□□ 0.24
HDAC6-230ENST00000488543 TULP4Q9NRJ4 1543 aa16.52■□□□□ 0.23
HDAC6-230ENST00000488543 CABP2Q9NPB3 220 aa16.52■□□□□ 0.23
HDAC6-230ENST00000488543 PTPRUQ92729 1446 aa16.51■□□□□ 0.23
HDAC6-230ENST00000488543 MYBBP1AQ9BQG0 1328 aaKnown RBP16.51■□□□□ 0.23
HDAC6-230ENST00000488543 AMOTL2Q9Y2J4 779 aa16.51■□□□□ 0.23
HDAC6-230ENST00000488543 ROBO2Q9HCK4 1378 aa16.5■□□□□ 0.23
HDAC6-230ENST00000488543 SLC12A5Q9H2X9 1139 aa16.49■□□□□ 0.23
HDAC6-230ENST00000488543 EVC2Q86UK5 1308 aa16.49■□□□□ 0.23
HDAC6-230ENST00000488543 BRD4O60885 1362 aaPredicted RBP16.48■□□□□ 0.23
HDAC6-230ENST00000488543 TMC1Q8TDI8 760 aa16.48■□□□□ 0.23
HDAC6-230ENST00000488543 SRPK2P78362 688 aaKnown RBP16.48■□□□□ 0.23
HDAC6-230ENST00000488543 IRX6P78412 446 aaPredicted RBP16.47■□□□□ 0.23
HDAC6-230ENST00000488543 FAM9BQ8IZU0 186 aa16.47■□□□□ 0.23
HDAC6-230ENST00000488543 DLC1Q96QB1 1528 aa16.47■□□□□ 0.23
HDAC6-230ENST00000488543 HNRNPUQ00839 825 aaKnown RBP eCLIP16.46■□□□□ 0.23
HDAC6-230ENST00000488543 AMER1Q5JTC6 1135 aaPredicted RBP16.46■□□□□ 0.23
HDAC6-230ENST00000488543 CC2D1BQ5T0F9 858 aaKnown RBP16.46■□□□□ 0.23
HDAC6-230ENST00000488543 CDK19Q9BWU1 502 aa16.46■□□□□ 0.23
HDAC6-230ENST00000488543 KCNA6P17658 529 aa16.46■□□□□ 0.23
HDAC6-230ENST00000488543 RBM33Q96EV2 1170 aaKnown RBP16.45■□□□□ 0.22
HDAC6-230ENST00000488543 NEFLP07196 543 aa16.45■□□□□ 0.22
HDAC6-230ENST00000488543 TECPR2O15040 1411 aa16.45■□□□□ 0.22
HDAC6-230ENST00000488543 KCNA4P22459 653 aa16.44■□□□□ 0.22
HDAC6-230ENST00000488543 PNISRQ8TF01 805 aaKnown RBP16.44■□□□□ 0.22
HDAC6-230ENST00000488543 NPC1L1Q9UHC9 1359 aa16.44■□□□□ 0.22
HDAC6-230ENST00000488543 SIRT1Q96EB6 747 aa16.44■□□□□ 0.22
HDAC6-230ENST00000488543 PUS7Q96PZ0 661 aaKnown RBP16.44■□□□□ 0.22
HDAC6-230ENST00000488543 KNSTRNQ9Y448 316 aa16.44■□□□□ 0.22
HDAC6-230ENST00000488543 NPHP4O75161 1426 aaPredicted RBP16.44■□□□□ 0.22
HDAC6-230ENST00000488543 KNDC1Q76NI1 1749 aa16.43■□□□□ 0.22
HDAC6-230ENST00000488543 NLRP13Q86W25 1043 aa16.43■□□□□ 0.22
HDAC6-230ENST00000488543 CARD14Q9BXL6 1004 aa16.43■□□□□ 0.22
HDAC6-230ENST00000488543 FAM135BQ49AJ0 1406 aa16.42■□□□□ 0.22
HDAC6-230ENST00000488543 NUTM2FA1L443 756 aa16.41■□□□□ 0.22
HDAC6-230ENST00000488543 WASLO00401 505 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-230ENST00000488543 CPS1P31327 1500 aa16.4■□□□□ 0.22
HDAC6-230ENST00000488543 USP32Q8NFA0 1604 aa16.39■□□□□ 0.21
HDAC6-230ENST00000488543 LMTK3Q96Q04 1460 aa16.39■□□□□ 0.21
HDAC6-230ENST00000488543 DIP2AQ14689 1571 aa16.39■□□□□ 0.21
HDAC6-230ENST00000488543 CABP1Q9NZU7 370 aa16.39■□□□□ 0.21
HDAC6-230ENST00000488543 MYT1Q01538 1121 aa16.38■□□□□ 0.21
HDAC6-230ENST00000488543 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.37■□□□□ 0.21
HDAC6-230ENST00000488543 NSD3Q9BZ95 1437 aa16.37■□□□□ 0.21
HDAC6-230ENST00000488543 PIK3R4Q99570 1358 aa16.37■□□□□ 0.21
HDAC6-230ENST00000488543 ZBED9Q6R2W3 1325 aa16.36■□□□□ 0.21
HDAC6-230ENST00000488543 PPP2R1AP30153 589 aa16.36■□□□□ 0.21
HDAC6-230ENST00000488543 NUDT16Q96DE0 195 aaKnown RBP16.35■□□□□ 0.21
HDAC6-230ENST00000488543 PTCH1Q13635 1447 aa16.34■□□□□ 0.21
HDAC6-230ENST00000488543 PRR36Q9H6K5 1346 aa16.34■□□□□ 0.21
HDAC6-230ENST00000488543 ATAD2Q6PL18 1390 aa16.34■□□□□ 0.21
HDAC6-230ENST00000488543 ANKRD36BQ8N2N9 1353 aa16.34■□□□□ 0.21
HDAC6-230ENST00000488543 XRN1Q8IZH2 1706 aaKnown RBP16.34■□□□□ 0.21
HDAC6-230ENST00000488543 NINLQ9Y2I6 1382 aa16.33■□□□□ 0.21
HDAC6-230ENST00000488543 CHD2O14647 1828 aaKnown RBP16.33■□□□□ 0.2
HDAC6-230ENST00000488543 A0A1W2PP64 1363 aa16.32■□□□□ 0.2
HDAC6-230ENST00000488543 CD163L1Q9NR16 1453 aa16.32■□□□□ 0.2
HDAC6-230ENST00000488543 SENP3-EIF4A1A0A087X0R7 540 aa16.31■□□□□ 0.2
HDAC6-230ENST00000488543 CCDC61Q9Y6R9 512 aa16.31■□□□□ 0.2
HDAC6-230ENST00000488543 RBM19Q9Y4C8 960 aaKnown RBP16.3■□□□□ 0.2
HDAC6-230ENST00000488543 INSRP06213 1382 aa16.3■□□□□ 0.2
HDAC6-230ENST00000488543 BLMP54132 1417 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-230ENST00000488543 PPIP5K1Q6PFW1 1433 aa16.29■□□□□ 0.2
HDAC6-230ENST00000488543 PROSER2Q86WR7 435 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-230ENST00000488543 TERF2IPQ9NYB0 399 aa16.29■□□□□ 0.2
HDAC6-230ENST00000488543 C14orf37Q86TY3 774 aa16.28■□□□□ 0.2
HDAC6-230ENST00000488543 STRCQ7RTU9 1775 aa16.28■□□□□ 0.2
HDAC6-230ENST00000488543 ATP7BP35670 1465 aa16.27■□□□□ 0.2
HDAC6-230ENST00000488543 TNNT2P45379 298 aaPredicted RBP16.27■□□□□ 0.19
HDAC6-230ENST00000488543 PMFBP1Q8TBY8 1022 aa16.27■□□□□ 0.19
HDAC6-230ENST00000488543 ANKRD26Q9UPS8 1709 aa16.27■□□□□ 0.19
HDAC6-230ENST00000488543 ADGRB2O60241 1585 aa16.26■□□□□ 0.19
HDAC6-230ENST00000488543 HDGFL2Q7Z4V5 671 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-230ENST00000488543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.26■□□□□ 0.19
HDAC6-230ENST00000488543 CGNL1Q0VF96 1302 aa16.25■□□□□ 0.19
HDAC6-230ENST00000488543 ANP32EQ9BTT0 268 aa16.25■□□□□ 0.19
HDAC6-230ENST00000488543 NSD2O96028 1365 aa16.25■□□□□ 0.19
HDAC6-230ENST00000488543 GGNBP2Q9H3C7 697 aa16.25■□□□□ 0.19
HDAC6-230ENST00000488543 FYB1O15117 783 aa16.24■□□□□ 0.19
HDAC6-230ENST00000488543 KIF20BQ96Q89 1820 aa16.23■□□□□ 0.19
HDAC6-230ENST00000488543 ACEP12821 1306 aa16.23■□□□□ 0.19
HDAC6-230ENST00000488543 MORC1Q86VD1 984 aa16.23■□□□□ 0.19
HDAC6-230ENST00000488543 ZNF335Q9H4Z2 1342 aaPredicted RBP16.22■□□□□ 0.19
HDAC6-230ENST00000488543 STRCP1A6NGW2 1772 aa16.22■□□□□ 0.19
HDAC6-230ENST00000488543 CPSF1Q10570 1443 aaKnown RBP16.22■□□□□ 0.19
HDAC6-230ENST00000488543 SHPRHQ149N8 1683 aa16.22■□□□□ 0.19
HDAC6-230ENST00000488543 SMG6Q86US8 1419 aaKnown RBP16.22■□□□□ 0.19
HDAC6-230ENST00000488543 NALCNQ8IZF0 1738 aa16.21■□□□□ 0.19
HDAC6-230ENST00000488543 PLEKHG3A1L390 1219 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms