RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 COL22A1Q8NFW1 1626 aaPredicted RBP14.23□□□□□ -0.13
COL17A1-207ENST00000488320 PSDA5PKW4 1024 aaPredicted RBP14.23□□□□□ -0.13
COL17A1-207ENST00000488320 MARF1Q9Y4F3 1742 aaKnown RBP14.23□□□□□ -0.13
COL17A1-207ENST00000488320 FOXO3O43524 673 aa14.22□□□□□ -0.13
COL17A1-207ENST00000488320 MYOM2P54296 1465 aa14.21□□□□□ -0.13
COL17A1-207ENST00000488320 ITGAEP38570 1179 aa14.21□□□□□ -0.13
COL17A1-207ENST00000488320 SEPT12Q8IYM1 358 aa14.21□□□□□ -0.13
COL17A1-207ENST00000488320 CCDC9Q9Y3X0 531 aaKnown RBP14.21□□□□□ -0.13
COL17A1-207ENST00000488320 ROBO2Q9HCK4 1378 aa14.21□□□□□ -0.14
COL17A1-207ENST00000488320 VGFO15240 615 aaPredicted RBP14.2□□□□□ -0.14
COL17A1-207ENST00000488320 HAP1P54257 671 aaPredicted RBP14.2□□□□□ -0.14
COL17A1-207ENST00000488320 SPHKAPQ2M3C7 1700 aa14.2□□□□□ -0.14
COL17A1-207ENST00000488320 LRPPRCP42704 1394 aaKnown RBP14.2□□□□□ -0.14
COL17A1-207ENST00000488320 RALGAPBQ86X10 1494 aa14.19□□□□□ -0.14
COL17A1-207ENST00000488320 NUTM2FA1L443 756 aa14.19□□□□□ -0.14
COL17A1-207ENST00000488320 BRWD3Q6RI45 1802 aa14.19□□□□□ -0.14
COL17A1-207ENST00000488320 LRP5O75197 1615 aa14.19□□□□□ -0.14
COL17A1-207ENST00000488320 HRCP23327 699 aa14.18□□□□□ -0.14
COL17A1-207ENST00000488320 BAG6P46379 1132 aa14.18□□□□□ -0.14
COL17A1-207ENST00000488320 KRT27Q7Z3Y8 459 aa14.18□□□□□ -0.14
COL17A1-207ENST00000488320 ROCK1Q13464 1354 aa14.18□□□□□ -0.14
COL17A1-207ENST00000488320 NEXMIFQ5QGS0 1516 aa14.17□□□□□ -0.14
COL17A1-207ENST00000488320 A0A0G2JS52 829 aa14.17□□□□□ -0.14
COL17A1-207ENST00000488320 PLEKHG5O94827 1062 aa14.17□□□□□ -0.14
COL17A1-207ENST00000488320 MYT1Q01538 1121 aa14.17□□□□□ -0.14
COL17A1-207ENST00000488320 GLI3P10071 1580 aa14.17□□□□□ -0.14
COL17A1-207ENST00000488320 HFM1A2PYH4 1435 aa14.16□□□□□ -0.14
COL17A1-207ENST00000488320 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.16□□□□□ -0.14
COL17A1-207ENST00000488320 KIF1BO60333 1816 aa14.16□□□□□ -0.14
COL17A1-207ENST00000488320 PXDNQ92626 1479 aa14.15□□□□□ -0.14
COL17A1-207ENST00000488320 VPS72Q15906 364 aa14.14□□□□□ -0.15
COL17A1-207ENST00000488320 SLIT2O94813 1529 aa14.14□□□□□ -0.15
COL17A1-207ENST00000488320 KRT28Q7Z3Y7 464 aa14.13□□□□□ -0.15
COL17A1-207ENST00000488320 SPATA31A3Q5VYP0 1347 aa14.13□□□□□ -0.15
COL17A1-207ENST00000488320 CLTCL1P53675 1640 aa14.12□□□□□ -0.15
COL17A1-207ENST00000488320 EN1Q05925 392 aaPredicted RBP14.12□□□□□ -0.15
COL17A1-207ENST00000488320 ONECUT3O60422 494 aaPredicted RBP14.11□□□□□ -0.15
COL17A1-207ENST00000488320 R3HDM1Q15032 1099 aaKnown RBP14.11□□□□□ -0.15
COL17A1-207ENST00000488320 LMOD2Q6P5Q4 547 aa14.11□□□□□ -0.15
COL17A1-207ENST00000488320 STK26Q9P289 416 aa14.11□□□□□ -0.15
COL17A1-207ENST00000488320 YY1P25490 414 aa14.1□□□□□ -0.15
COL17A1-207ENST00000488320 PSME1Q06323 249 aa14.1□□□□□ -0.15
COL17A1-207ENST00000488320 WAPLQ7Z5K2 1190 aa14.1□□□□□ -0.15
COL17A1-207ENST00000488320 CABLES1Q8TDN4 633 aa14.1□□□□□ -0.15
COL17A1-207ENST00000488320 RPGRIP1LQ68CZ1 1315 aa14.1□□□□□ -0.15
COL17A1-207ENST00000488320 CDC42BPGQ6DT37 1551 aa14.09□□□□□ -0.15
COL17A1-207ENST00000488320 NAIPQ13075 1403 aa14.08□□□□□ -0.15
COL17A1-207ENST00000488320 FAM98CQ17RN3 349 aaKnown RBP14.08□□□□□ -0.16
COL17A1-207ENST00000488320 USP32Q8NFA0 1604 aa14.07□□□□□ -0.16
COL17A1-207ENST00000488320 PRAG1Q86YV5 1406 aa14.07□□□□□ -0.16
COL17A1-207ENST00000488320 CCDC144AA2RUR9 1427 aa14.06□□□□□ -0.16
COL17A1-207ENST00000488320 FAM182BQ5T319 152 aa14.05□□□□□ -0.16
COL17A1-207ENST00000488320 NWD2Q9ULI1 1742 aa14.04□□□□□ -0.16
COL17A1-207ENST00000488320 FAM83GA6ND36 823 aa14.04□□□□□ -0.16
COL17A1-207ENST00000488320 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
COL17A1-207ENST00000488320 PHF8Q9UPP1 1060 aa14.04□□□□□ -0.16
COL17A1-207ENST00000488320 PLCH1Q4KWH8 1693 aa14.04□□□□□ -0.16
COL17A1-207ENST00000488320 EZH2Q15910 746 aaKnown RBP14.03□□□□□ -0.16
COL17A1-207ENST00000488320 BTG4Q9NY30 223 aa14.03□□□□□ -0.16
COL17A1-207ENST00000488320 RGPD1P0DJD0 1748 aa14.02□□□□□ -0.16
COL17A1-207ENST00000488320 KIF1AQ12756 1690 aa14.02□□□□□ -0.16
COL17A1-207ENST00000488320 TNS3Q68CZ2 1445 aa14.02□□□□□ -0.16
COL17A1-207ENST00000488320 TMEM132EQ6IEE7 984 aa14.02□□□□□ -0.17
COL17A1-207ENST00000488320 PPLO60437 1756 aa14.01□□□□□ -0.17
COL17A1-207ENST00000488320 PLEKHH1Q9ULM0 1364 aa14□□□□□ -0.17
COL17A1-207ENST00000488320 RGL3Q3MIN7 710 aa14□□□□□ -0.17
COL17A1-207ENST00000488320 ARHGEF10O15013 1369 aa13.99□□□□□ -0.17
COL17A1-207ENST00000488320 FMN2Q9NZ56 1722 aa13.99□□□□□ -0.17
COL17A1-207ENST00000488320 ADGRF5Q8IZF2 1346 aa13.99□□□□□ -0.17
COL17A1-207ENST00000488320 PPP1R1BQ9UD71 204 aaPredicted RBP13.99□□□□□ -0.17
COL17A1-207ENST00000488320 RGPD8O14715 1765 aaPredicted RBP13.99□□□□□ -0.17
COL17A1-207ENST00000488320 SBNO1A3KN83 1393 aa13.98□□□□□ -0.17
COL17A1-207ENST00000488320 APBA3O96018 575 aa13.98□□□□□ -0.17
COL17A1-207ENST00000488320 PMFBP1Q8TBY8 1022 aa13.98□□□□□ -0.17
COL17A1-207ENST00000488320 SLC4A1APQ9BWU0 796 aaKnown RBP13.98□□□□□ -0.17
COL17A1-207ENST00000488320 ABCC11Q96J66 1382 aa13.97□□□□□ -0.17
COL17A1-207ENST00000488320 TRIM37O94972 964 aa13.97□□□□□ -0.17
COL17A1-207ENST00000488320 NBPF8Q3BBV2 869 aa13.97□□□□□ -0.17
COL17A1-207ENST00000488320 NBPF14Q5TI25 921 aa13.97□□□□□ -0.17
COL17A1-207ENST00000488320 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
COL17A1-207ENST00000488320 CAMKK2Q96RR4 588 aa13.96□□□□□ -0.17
COL17A1-207ENST00000488320 TECPR2O15040 1411 aa13.96□□□□□ -0.18
COL17A1-207ENST00000488320 SAFB2Q14151 953 aaKnown RBP eCLIP13.95□□□□□ -0.18
COL17A1-207ENST00000488320 FAM196AQ6ZSG2 479 aa13.95□□□□□ -0.18
COL17A1-207ENST00000488320 SPATA31A5Q5VU36 1347 aa13.94□□□□□ -0.18
COL17A1-207ENST00000488320 SPATA31A7Q8IWB4 1347 aa13.94□□□□□ -0.18
COL17A1-207ENST00000488320 DISP2A7MBM2 1401 aa13.94□□□□□ -0.18
COL17A1-207ENST00000488320 ABCA3Q99758 1704 aa13.94□□□□□ -0.18
COL17A1-207ENST00000488320 RRBP1Q9P2E9 1410 aaKnown RBP13.94□□□□□ -0.18
COL17A1-207ENST00000488320 NRAPQ86VF7 1730 aa13.93□□□□□ -0.18
COL17A1-207ENST00000488320 SIRT1Q96EB6 747 aa13.93□□□□□ -0.18
COL17A1-207ENST00000488320 NRXN1Q9ULB1 1477 aa13.93□□□□□ -0.18
COL17A1-207ENST00000488320 IFT172Q9UG01 1749 aa13.93□□□□□ -0.18
COL17A1-207ENST00000488320 YTHDC2Q9H6S0 1430 aaKnown RBP13.92□□□□□ -0.18
COL17A1-207ENST00000488320 COL14A1Q05707 1796 aaKnown RBP13.92□□□□□ -0.18
COL17A1-207ENST00000488320 MSH5O43196 834 aa13.92□□□□□ -0.18
COL17A1-207ENST00000488320 SPON1Q9HCB6 807 aa13.92□□□□□ -0.18
COL17A1-207ENST00000488320 KNDC1Q76NI1 1749 aa13.92□□□□□ -0.18
COL17A1-207ENST00000488320 TNS1Q9HBL0 1735 aaKnown RBP13.92□□□□□ -0.18
COL17A1-207ENST00000488320 PDE3BQ13370 1112 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms