RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 NR1I2O75469 434 aa11.31□□□□□ -0.6
USP48-209ENST00000487880 Q3C1V9 767 aa11.31□□□□□ -0.6
USP48-209ENST00000487880 HCSTQ9UBK5 93 aa11.31□□□□□ -0.6
USP48-209ENST00000487880 MTMR2Q13614 643 aa11.3□□□□□ -0.6
USP48-209ENST00000487880 SCUBE3Q8IX30 993 aa11.3□□□□□ -0.6
USP48-209ENST00000487880 THAP11Q96EK4 314 aa11.3□□□□□ -0.6
USP48-209ENST00000487880 RFC5P40937 340 aa11.29□□□□□ -0.6
USP48-209ENST00000487880 RTL5Q5HYW3 569 aaPredicted RBP11.29□□□□□ -0.6
USP48-209ENST00000487880 ATP1B4Q9UN42 357 aaPredicted RBP11.29□□□□□ -0.6
USP48-209ENST00000487880 SPDYE5A6NIY4 337 aa11.28□□□□□ -0.6
USP48-209ENST00000487880 TJAP1Q5JTD0 557 aa11.28□□□□□ -0.6
USP48-209ENST00000487880 BRICD5Q6PL45 260 aa11.28□□□□□ -0.6
USP48-209ENST00000487880 MTRQ99707 1265 aa11.28□□□□□ -0.6
USP48-209ENST00000487880 COPS2P61201 443 aa11.27□□□□□ -0.61
USP48-209ENST00000487880 RNF19BQ6ZMZ0 732 aa11.27□□□□□ -0.61
USP48-209ENST00000487880 SYMPKQ92797 1274 aaKnown RBP11.27□□□□□ -0.61
USP48-209ENST00000487880 C6orf229H3BNL8 230 aa11.26□□□□□ -0.61
USP48-209ENST00000487880 RETREG3Q86VR2 466 aa11.26□□□□□ -0.61
USP48-209ENST00000487880 NUTM2BA6NNL0 878 aaPredicted RBP11.25□□□□□ -0.61
USP48-209ENST00000487880 NUTM2EB1AL46 878 aaPredicted RBP11.25□□□□□ -0.61
USP48-209ENST00000487880 NUTM2DQ5VT03 806 aaPredicted RBP11.25□□□□□ -0.61
USP48-209ENST00000487880 NUTM2AQ8IVF1 878 aaPredicted RBP11.25□□□□□ -0.61
USP48-209ENST00000487880 CFAP99D6REC4 459 aa11.24□□□□□ -0.61
USP48-209ENST00000487880 ZPR1O75312 459 aa11.24□□□□□ -0.61
USP48-209ENST00000487880 FMNL1O95466 1100 aaPredicted RBP11.24□□□□□ -0.61
USP48-209ENST00000487880 TMEM259Q4ZIN3 620 aa11.24□□□□□ -0.61
USP48-209ENST00000487880 IL21Q9HBE4 155 aa11.24□□□□□ -0.61
USP48-209ENST00000487880 BANK1Q8NDB2 785 aa11.22□□□□□ -0.61
USP48-209ENST00000487880 USB1Q9BQ65 265 aaKnown RBP11.22□□□□□ -0.61
USP48-209ENST00000487880 ITGBL1O95965 494 aaPredicted RBP11.21□□□□□ -0.61
USP48-209ENST00000487880 PRR7Q8TB68 274 aa11.21□□□□□ -0.61
USP48-209ENST00000487880 ZNF516Q92618 1163 aa11.21□□□□□ -0.61
USP48-209ENST00000487880 TLL1O43897 1013 aa11.2□□□□□ -0.62
USP48-209ENST00000487880 MSS51Q4VC12 460 aa11.2□□□□□ -0.62
USP48-209ENST00000487880 DESI1Q6ICB0 168 aa11.2□□□□□ -0.62
USP48-209ENST00000487880 SPSB2Q99619 263 aa11.2□□□□□ -0.62
USP48-209ENST00000487880 ADH1BP00325 375 aa11.19□□□□□ -0.62
USP48-209ENST00000487880 MCM6Q14566 821 aa11.19□□□□□ -0.62
USP48-209ENST00000487880 FAM160A2Q8N612 972 aaPredicted RBP11.19□□□□□ -0.62
USP48-209ENST00000487880 PLA2G2EQ9NZK7 142 aa11.19□□□□□ -0.62
USP48-209ENST00000487880 FLIIQ13045 1269 aa11.18□□□□□ -0.62
USP48-209ENST00000487880 SOCS7O14512 581 aa11.17□□□□□ -0.62
USP48-209ENST00000487880 AP1G2O75843 785 aa11.17□□□□□ -0.62
USP48-209ENST00000487880 HELBQ8NG08 1087 aaPredicted RBP11.17□□□□□ -0.62
USP48-209ENST00000487880 USP17L8P0C7I0 530 aa11.16□□□□□ -0.62
USP48-209ENST00000487880 CTDSPL2Q05D32 466 aa11.15□□□□□ -0.62
USP48-209ENST00000487880 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
USP48-209ENST00000487880 DXOO77932 396 aaKnown RBP11.14□□□□□ -0.63
USP48-209ENST00000487880 JUNDP17535 347 aa11.14□□□□□ -0.63
USP48-209ENST00000487880 MMP16P51512 607 aa11.14□□□□□ -0.63
USP48-209ENST00000487880 MTMR14Q8NCE2 650 aa11.14□□□□□ -0.63
USP48-209ENST00000487880 KCNC4Q03721 635 aa11.13□□□□□ -0.63
USP48-209ENST00000487880 LYPD8Q6UX82 237 aa11.13□□□□□ -0.63
USP48-209ENST00000487880 NKX2-3Q8TAU0 364 aa11.13□□□□□ -0.63
USP48-209ENST00000487880 PRDM9Q9NQV7 894 aa11.13□□□□□ -0.63
USP48-209ENST00000487880 PER1O15534 1290 aaPredicted RBP11.12□□□□□ -0.63
USP48-209ENST00000487880 TSC1Q92574 1164 aa11.12□□□□□ -0.63
USP48-209ENST00000487880 TIMELESSQ9UNS1 1208 aa11.11□□□□□ -0.63
USP48-209ENST00000487880 PTPRNQ16849 979 aa11.1□□□□□ -0.63
USP48-209ENST00000487880 ERICH6Q7L0X2 663 aa11.1□□□□□ -0.63
USP48-209ENST00000487880 LRRN4Q8WUT4 740 aa11.1□□□□□ -0.63
USP48-209ENST00000487880 SLC6A16Q9GZN6 736 aa11.1□□□□□ -0.63
USP48-209ENST00000487880 HMX1Q9NP08 348 aaPredicted RBP11.09□□□□□ -0.63
USP48-209ENST00000487880 GJD4Q96KN9 370 aaPredicted RBP11.08□□□□□ -0.64
USP48-209ENST00000487880 S1PR4O95977 384 aa11.07□□□□□ -0.64
USP48-209ENST00000487880 IFFO2Q5TF58 517 aa11.07□□□□□ -0.64
USP48-209ENST00000487880 F12P00748 615 aaPredicted RBP11.06□□□□□ -0.64
USP48-209ENST00000487880 C14orf37Q86TY3 774 aa11.06□□□□□ -0.64
USP48-209ENST00000487880 TRIM34Q9BYJ4 488 aa11.06□□□□□ -0.64
USP48-209ENST00000487880 APBB1O00213 710 aa11.04□□□□□ -0.64
USP48-209ENST00000487880 CCNYL3P0C7X3 344 aa11.04□□□□□ -0.64
USP48-209ENST00000487880 NUDT12Q9BQG2 462 aa11.04□□□□□ -0.64
USP48-209ENST00000487880 UBTFP17480 764 aaKnown RBP11.03□□□□□ -0.64
USP48-209ENST00000487880 GPR37L1O60883 481 aa11.02□□□□□ -0.65
USP48-209ENST00000487880 EPS8L1Q8TE68 723 aa11.02□□□□□ -0.65
USP48-209ENST00000487880 EVA1BQ9NVM1 165 aa11.02□□□□□ -0.65
USP48-209ENST00000487880 COG6Q9Y2V7 657 aa11.02□□□□□ -0.65
USP48-209ENST00000487880 POM121Q96HA1 1249 aa11.01□□□□□ -0.65
USP48-209ENST00000487880 MAP10Q9P2G4 905 aa11.01□□□□□ -0.65
USP48-209ENST00000487880 NR6A1Q15406 480 aa11□□□□□ -0.65
USP48-209ENST00000487880 A6NJR5 290 aa10.99□□□□□ -0.65
USP48-209ENST00000487880 RNF223E7ERA6 249 aa10.99□□□□□ -0.65
USP48-209ENST00000487880 KCNH2Q12809 1159 aa10.99□□□□□ -0.65
USP48-209ENST00000487880 CLUAP1Q96AJ1 413 aa10.99□□□□□ -0.65
USP48-209ENST00000487880 FCF1Q9Y324 198 aaKnown RBP10.99□□□□□ -0.65
USP48-209ENST00000487880 NDUFB9Q9Y6M9 179 aa10.99□□□□□ -0.65
USP48-209ENST00000487880 PPP1R18Q6NYC8 613 aa10.98□□□□□ -0.65
USP48-209ENST00000487880 ZMYND15Q9H091 742 aa10.98□□□□□ -0.65
USP48-209ENST00000487880 TBC1D2BQ9UPU7 963 aa10.98□□□□□ -0.65
USP48-209ENST00000487880 GGCXP38435 758 aa10.97□□□□□ -0.65
USP48-209ENST00000487880 ANKLE1Q8NAG6 615 aa10.97□□□□□ -0.65
USP48-209ENST00000487880 GDPD2Q9HCC8 539 aa10.97□□□□□ -0.65
USP48-209ENST00000487880 PPEF1O14829 653 aaPredicted RBP10.96□□□□□ -0.65
USP48-209ENST00000487880 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.96□□□□□ -0.65
USP48-209ENST00000487880 RAD21O60216 631 aa10.95□□□□□ -0.66
USP48-209ENST00000487880 CTHP32929 405 aa10.95□□□□□ -0.66
USP48-209ENST00000487880 PTCRAQ6ISU1 281 aaPredicted RBP10.95□□□□□ -0.66
USP48-209ENST00000487880 PRM3Q9NNZ6 103 aa10.95□□□□□ -0.66
USP48-209ENST00000487880 FNBP4Q8N3X1 1017 aaPredicted RBP10.94□□□□□ -0.66
USP48-209ENST00000487880 CCDC24Q8N4L8 307 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms