RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 PRR20CP86479 221 aa11.3□□□□□ -0.6
SMC4-219ENST00000487747 PRR20DP86480 221 aa11.3□□□□□ -0.6
SMC4-219ENST00000487747 PRR20BP86481 221 aa11.3□□□□□ -0.6
SMC4-219ENST00000487747 PRR20AP86496 221 aa11.3□□□□□ -0.6
SMC4-219ENST00000487747 USB1Q9BQ65 265 aaKnown RBP11.3□□□□□ -0.6
SMC4-219ENST00000487747 PKD2L1Q9P0L9 805 aa11.3□□□□□ -0.6
SMC4-219ENST00000487747 MMP16P51512 607 aa11.29□□□□□ -0.6
SMC4-219ENST00000487747 FOXC1Q12948 553 aa11.29□□□□□ -0.6
SMC4-219ENST00000487747 TTLL12Q14166 644 aaPredicted RBP11.29□□□□□ -0.6
SMC4-219ENST00000487747 AMHR2Q16671 573 aa11.29□□□□□ -0.6
SMC4-219ENST00000487747 GIGYF2Q6Y7W6 1299 aaKnown RBP11.28□□□□□ -0.6
SMC4-219ENST00000487747 NUTM1Q86Y26 1132 aa11.28□□□□□ -0.6
SMC4-219ENST00000487747 RPIAP49247 311 aa11.27□□□□□ -0.61
SMC4-219ENST00000487747 PCDHGC3Q9UN70 934 aa11.27□□□□□ -0.61
SMC4-219ENST00000487747 DXOO77932 396 aaKnown RBP11.26□□□□□ -0.61
SMC4-219ENST00000487747 SPIRE2Q8WWL2 714 aa11.26□□□□□ -0.61
SMC4-219ENST00000487747 TRIM66O15016 1216 aa11.25□□□□□ -0.61
SMC4-219ENST00000487747 NDUFV2P19404 249 aa11.25□□□□□ -0.61
SMC4-219ENST00000487747 CD2BP2O95400 341 aaKnown RBP11.24□□□□□ -0.61
SMC4-219ENST00000487747 PARP9Q8IXQ6 854 aa11.24□□□□□ -0.61
SMC4-219ENST00000487747 MYT1Q01538 1121 aa11.23□□□□□ -0.61
SMC4-219ENST00000487747 FAM187AA6NFU0 413 aa11.22□□□□□ -0.61
SMC4-219ENST00000487747 MOXD2PA6NHM9 499 aa11.22□□□□□ -0.61
SMC4-219ENST00000487747 FDX1P10109 184 aa11.22□□□□□ -0.61
SMC4-219ENST00000487747 PKDCCQ504Y2 493 aa11.22□□□□□ -0.61
SMC4-219ENST00000487747 MS4A1P11836 297 aa11.21□□□□□ -0.61
SMC4-219ENST00000487747 BEGAINQ9BUH8 593 aa11.21□□□□□ -0.61
SMC4-219ENST00000487747 ZBTB24O43167 697 aaPredicted RBP11.2□□□□□ -0.62
SMC4-219ENST00000487747 DGAT1O75907 488 aa11.2□□□□□ -0.62
SMC4-219ENST00000487747 CCDC24Q8N4L8 307 aa11.2□□□□□ -0.62
SMC4-219ENST00000487747 AK7Q96M32 723 aa11.2□□□□□ -0.62
SMC4-219ENST00000487747 TRIM32Q13049 653 aa11.19□□□□□ -0.62
SMC4-219ENST00000487747 C6orf229H3BNL8 230 aa11.18□□□□□ -0.62
SMC4-219ENST00000487747 TOR4AQ9NXH8 423 aa11.18□□□□□ -0.62
SMC4-219ENST00000487747 JUNDP17535 347 aa11.17□□□□□ -0.62
SMC4-219ENST00000487747 RETREG3Q86VR2 466 aa11.17□□□□□ -0.62
SMC4-219ENST00000487747 SLC24A3Q9HC58 644 aa11.17□□□□□ -0.62
SMC4-219ENST00000487747 POTECB2RU33 542 aa11.15□□□□□ -0.62
SMC4-219ENST00000487747 ST8SIA5O15466 376 aa11.15□□□□□ -0.62
SMC4-219ENST00000487747 PTCRAQ6ISU1 281 aaPredicted RBP11.15□□□□□ -0.62
SMC4-219ENST00000487747 TBC1D2Q9BYX2 928 aa11.15□□□□□ -0.62
SMC4-219ENST00000487747 ZNF787Q6DD87 383 aa11.14□□□□□ -0.63
SMC4-219ENST00000487747 SKOR1P84550 965 aa11.13□□□□□ -0.63
SMC4-219ENST00000487747 PDE4DQ08499 809 aa11.13□□□□□ -0.63
SMC4-219ENST00000487747 CYP4X1Q8N118 509 aa11.13□□□□□ -0.63
SMC4-219ENST00000487747 PCDHB15Q9Y5E8 787 aa11.13□□□□□ -0.63
SMC4-219ENST00000487747 WNT7AO00755 349 aa11.12□□□□□ -0.63
SMC4-219ENST00000487747 MRGPRX2Q96LB1 330 aa11.12□□□□□ -0.63
SMC4-219ENST00000487747 NUDT12Q9BQG2 462 aa11.12□□□□□ -0.63
SMC4-219ENST00000487747 AAASQ9NRG9 546 aa11.11□□□□□ -0.63
SMC4-219ENST00000487747 RSBN1LQ6PCB5 846 aaPredicted RBP11.1□□□□□ -0.63
SMC4-219ENST00000487747 PRR7Q8TB68 274 aa11.1□□□□□ -0.63
SMC4-219ENST00000487747 DACH1Q9UI36 760 aa11.09□□□□□ -0.63
SMC4-219ENST00000487747 TTC24A2A3L6 582 aaPredicted RBP11.08□□□□□ -0.64
SMC4-219ENST00000487747 MTMR2Q13614 643 aa11.08□□□□□ -0.64
SMC4-219ENST00000487747 J3QL48 77 aa11.07□□□□□ -0.64
SMC4-219ENST00000487747 AVPP01185 164 aa11.07□□□□□ -0.64
SMC4-219ENST00000487747 SMPD1P17405 629 aa11.07□□□□□ -0.64
SMC4-219ENST00000487747 RC3H1Q5TC82 1133 aaKnown RBP11.07□□□□□ -0.64
SMC4-219ENST00000487747 SPTLC1O15269 473 aa11.06□□□□□ -0.64
SMC4-219ENST00000487747 SNIP1Q8TAD8 396 aaKnown RBP11.06□□□□□ -0.64
SMC4-219ENST00000487747 CCNYL3P0C7X3 344 aa11.05□□□□□ -0.64
SMC4-219ENST00000487747 RIC3Q7Z5B4 369 aa11.05□□□□□ -0.64
SMC4-219ENST00000487747 CABLES1Q8TDN4 633 aa11.05□□□□□ -0.64
SMC4-219ENST00000487747 CFAP99D6REC4 459 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 HRCP23327 699 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 GJA5P36382 358 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 PTPRNQ16849 979 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 EVA1BQ9NVM1 165 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 LIMD1Q9UGP4 676 aa11.04□□□□□ -0.64
SMC4-219ENST00000487747 WNT7BP56706 349 aa11.03□□□□□ -0.64
SMC4-219ENST00000487747 CSPP1Q1MSJ5 1256 aa11.03□□□□□ -0.64
SMC4-219ENST00000487747 CRIPAKQ8N1N5 446 aa11.03□□□□□ -0.64
SMC4-219ENST00000487747 DIXDC1Q155Q3 683 aa11.02□□□□□ -0.65
SMC4-219ENST00000487747 MYSM1Q5VVJ2 828 aa11.02□□□□□ -0.65
SMC4-219ENST00000487747 ZNF775Q96BV0 537 aaPredicted RBP11.02□□□□□ -0.65
SMC4-219ENST00000487747 SPDYE5A6NIY4 337 aa11.01□□□□□ -0.65
SMC4-219ENST00000487747 SH3BP2P78314 561 aa11.01□□□□□ -0.65
SMC4-219ENST00000487747 DESI1Q6ICB0 168 aa11.01□□□□□ -0.65
SMC4-219ENST00000487747 UNC93B1Q9H1C4 597 aa11.01□□□□□ -0.65
SMC4-219ENST00000487747 AXIN1O15169 862 aa11□□□□□ -0.65
SMC4-219ENST00000487747 KCNH2Q12809 1159 aa11□□□□□ -0.65
SMC4-219ENST00000487747 QPCTQ16769 361 aa11□□□□□ -0.65
SMC4-219ENST00000487747 LINC01559Q495D7 138 aa11□□□□□ -0.65
SMC4-219ENST00000487747 HPS1Q92902 700 aa11□□□□□ -0.65
SMC4-219ENST00000487747 BAP1Q92560 729 aa10.99□□□□□ -0.65
SMC4-219ENST00000487747 ZBTB3Q9H5J0 574 aa10.99□□□□□ -0.65
SMC4-219ENST00000487747 SIAH2O43255 324 aa10.98□□□□□ -0.65
SMC4-219ENST00000487747 LYPD8Q6UX82 237 aa10.98□□□□□ -0.65
SMC4-219ENST00000487747 PER1O15534 1290 aaPredicted RBP10.97□□□□□ -0.65
SMC4-219ENST00000487747 SMCPP49901 116 aaPredicted RBP10.97□□□□□ -0.65
SMC4-219ENST00000487747 SLC24A1O60721 1099 aa10.96□□□□□ -0.65
SMC4-219ENST00000487747 ALDH1A1P00352 501 aa10.96□□□□□ -0.65
SMC4-219ENST00000487747 CTC1Q2NKJ3 1217 aa10.96□□□□□ -0.65
SMC4-219ENST00000487747 PRPF38BQ5VTL8 546 aaKnown RBP10.96□□□□□ -0.65
SMC4-219ENST00000487747 EHBP1Q8NDI1 1231 aa10.96□□□□□ -0.65
SMC4-219ENST00000487747 BCANQ96GW7 911 aa10.96□□□□□ -0.65
SMC4-219ENST00000487747 GMPR2Q9P2T1 348 aaKnown RBP10.96□□□□□ -0.65
SMC4-219ENST00000487747 GPBP1L1Q9HC44 474 aaPredicted RBP10.95□□□□□ -0.66
SMC4-219ENST00000487747 MAP10Q9P2G4 905 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms