RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 AGLP35573 1532 aa34.27■■■■□ 3.08
HLA-C-208ENST00000487245 MORC1Q86VD1 984 aa34.26■■■■□ 3.07
HLA-C-208ENST00000487245 IPO9Q96P70 1041 aaKnown RBP34.26■■■■□ 3.07
HLA-C-208ENST00000487245 CRBNQ96SW2 442 aa34.24■■■■□ 3.07
HLA-C-208ENST00000487245 NUTM2DQ5VT03 806 aaPredicted RBP34.23■■■■□ 3.07
HLA-C-208ENST00000487245 TRMT2AQ8IZ69 625 aaKnown RBP34.22■■■■□ 3.07
HLA-C-208ENST00000487245 TULP4Q9NRJ4 1543 aa34.22■■■■□ 3.07
HLA-C-208ENST00000487245 PLIN1O60240 522 aa34.22■■■■□ 3.07
HLA-C-208ENST00000487245 CGNL1Q0VF96 1302 aa34.22■■■■□ 3.07
HLA-C-208ENST00000487245 MYO5BQ9ULV0 1848 aa34.21■■■■□ 3.07
HLA-C-208ENST00000487245 SLFN5Q08AF3 891 aa34.21■■■■□ 3.07
HLA-C-208ENST00000487245 NSD2O96028 1365 aa34.21■■■■□ 3.07
HLA-C-208ENST00000487245 ANKRD36BQ8N2N9 1353 aa34.2■■■■□ 3.07
HLA-C-208ENST00000487245 NINLQ9Y2I6 1382 aa34.2■■■■□ 3.07
HLA-C-208ENST00000487245 CCDC146Q8IYE0 955 aa34.17■■■■□ 3.06
HLA-C-208ENST00000487245 APAF1O14727 1248 aa34.16■■■■□ 3.06
HLA-C-208ENST00000487245 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.15■■■■□ 3.06
HLA-C-208ENST00000487245 PDE4AP27815 886 aa34.14■■■■□ 3.06
HLA-C-208ENST00000487245 BACH2Q9BYV9 841 aa34.14■■■■□ 3.06
HLA-C-208ENST00000487245 TSPOAP1O95153 1857 aa34.13■■■■□ 3.05
HLA-C-208ENST00000487245 E9PSI1 815 aa34.12■■■■□ 3.05
HLA-C-208ENST00000487245 PAK3O75914 559 aaPredicted RBP34.11■■■■□ 3.05
HLA-C-208ENST00000487245 NKTRP30414 1462 aaKnown RBP34.1■■■■□ 3.05
HLA-C-208ENST00000487245 KDM2BQ8NHM5 1336 aa34.1■■■■□ 3.05
HLA-C-208ENST00000487245 FBXO31Q5XUX0 539 aaPredicted RBP34.1■■■■□ 3.05
HLA-C-208ENST00000487245 CFAP53Q96M91 514 aa34.1■■■■□ 3.05
HLA-C-208ENST00000487245 SHPRHQ149N8 1683 aa34.08■■■■□ 3.05
HLA-C-208ENST00000487245 PTPRMP28827 1452 aa34.08■■■■□ 3.05
HLA-C-208ENST00000487245 YTHDC2Q9H6S0 1430 aaKnown RBP34.08■■■■□ 3.05
HLA-C-208ENST00000487245 C20orf194Q5TEA3 1177 aa34.07■■■■□ 3.05
HLA-C-208ENST00000487245 ATAD2Q6PL18 1390 aa34.07■■■■□ 3.04
HLA-C-208ENST00000487245 CABP2Q9NPB3 220 aa34.06■■■■□ 3.04
HLA-C-208ENST00000487245 ZBTB47Q9UFB7 747 aaPredicted RBP34.06■■■■□ 3.04
HLA-C-208ENST00000487245 STAG3Q9UJ98 1225 aa34.06■■■■□ 3.04
HLA-C-208ENST00000487245 STK26Q9P289 416 aa34.05■■■■□ 3.04
HLA-C-208ENST00000487245 ALKQ9UM73 1620 aa34.05■■■■□ 3.04
HLA-C-208ENST00000487245 SPATA31D1Q6ZQQ2 1576 aa34.04■■■■□ 3.04
HLA-C-208ENST00000487245 RUNDC1Q96C34 613 aa34.03■■■■□ 3.04
HLA-C-208ENST00000487245 CLTCQ00610 1675 aaKnown RBP34.03■■■■□ 3.04
HLA-C-208ENST00000487245 CENPQQ7L2Z9 268 aaPredicted RBP34.03■■■■□ 3.04
HLA-C-208ENST00000487245 DNAJC5Q9H3Z4 198 aa34.03■■■■□ 3.04
HLA-C-208ENST00000487245 POGKQ9P215 609 aa34.01■■■■□ 3.04
HLA-C-208ENST00000487245 SRPK2P78362 688 aaKnown RBP34.01■■■■□ 3.03
HLA-C-208ENST00000487245 NCBP3Q53F19 620 aaKnown RBP34.01■■■■□ 3.03
HLA-C-208ENST00000487245 MTHFSP49914 203 aa34■■■■□ 3.03
HLA-C-208ENST00000487245 TNNT2P45379 298 aaPredicted RBP33.99■■■■□ 3.03
HLA-C-208ENST00000487245 ABCC11Q96J66 1382 aa33.99■■■■□ 3.03
HLA-C-208ENST00000487245 SAFB2Q14151 953 aaKnown RBP eCLIP33.99■■■■□ 3.03
HLA-C-208ENST00000487245 PRAM1Q96QH2 718 aa33.98■■■■□ 3.03
HLA-C-208ENST00000487245 TERF2IPQ9NYB0 399 aa33.98■■■■□ 3.03
HLA-C-208ENST00000487245 A2ML1A8K2U0 1454 aa33.96■■■■□ 3.03
HLA-C-208ENST00000487245 WWC1Q8IX03 1113 aa33.96■■■■□ 3.03
HLA-C-208ENST00000487245 SPINK5Q9NQ38 1064 aaPredicted RBP33.95■■■■□ 3.03
HLA-C-208ENST00000487245 A0A1W2PP64 1363 aa33.95■■■■□ 3.03
HLA-C-208ENST00000487245 ARHGEF40Q8TER5 1519 aa33.94■■■■□ 3.02
HLA-C-208ENST00000487245 DLC1Q96QB1 1528 aa33.94■■■■□ 3.02
HLA-C-208ENST00000487245 MED14O60244 1454 aa33.93■■■■□ 3.02
HLA-C-208ENST00000487245 IQSEC2Q5JU85 1478 aa33.93■■■■□ 3.02
HLA-C-208ENST00000487245 MINK1Q8N4C8 1332 aaPredicted RBP33.92■■■■□ 3.02
HLA-C-208ENST00000487245 RIMS2Q9UQ26 1411 aa33.91■■■■□ 3.02
HLA-C-208ENST00000487245 CCDC27Q2M243 656 aa33.9■■■■□ 3.02
HLA-C-208ENST00000487245 WDR63Q8IWG1 891 aa33.9■■■■□ 3.02
HLA-C-208ENST00000487245 PHF23Q9BUL5 403 aaPredicted RBP33.89■■■■□ 3.02
HLA-C-208ENST00000487245 TCP11L2Q8N4U5 519 aa33.88■■■■□ 3.01
HLA-C-208ENST00000487245 ANKRD26Q9UPS8 1709 aa33.88■■■■□ 3.01
HLA-C-208ENST00000487245 HDGFL2Q7Z4V5 671 aaPredicted RBP33.87■■■■□ 3.01
HLA-C-208ENST00000487245 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.86■■■■□ 3.01
HLA-C-208ENST00000487245 CDK19Q9BWU1 502 aa33.85■■■■□ 3.01
HLA-C-208ENST00000487245 DMRT2Q9Y5R5 561 aa33.84■■■■□ 3.01
HLA-C-208ENST00000487245 KIF13AQ9H1H9 1805 aa33.83■■■■□ 3.01
HLA-C-208ENST00000487245 CD163L1Q9NR16 1453 aa33.83■■■■□ 3.01
HLA-C-208ENST00000487245 PDE3AQ14432 1141 aa33.82■■■■□ 3.01
HLA-C-208ENST00000487245 ESF1Q9H501 851 aaKnown RBP33.82■■■■□ 3.01
HLA-C-208ENST00000487245 SENP3Q9H4L4 574 aaPredicted RBP33.82■■■■□ 3
HLA-C-208ENST00000487245 NPM2Q86SE8 214 aaKnown RBP33.81■■■■□ 3
HLA-C-208ENST00000487245 SETD1AO15047 1707 aaKnown RBP33.81■■■■□ 3
HLA-C-208ENST00000487245 MLECQ14165 292 aa33.8■■■■□ 3
HLA-C-208ENST00000487245 FYB1O15117 783 aa33.79■■■■□ 3
HLA-C-208ENST00000487245 U2AF1L5P0DN76 240 aaPredicted RBP33.79■■■■□ 3
HLA-C-208ENST00000487245 U2AF1Q01081 240 aaKnown RBP eCLIP33.79■■■■□ 3
HLA-C-208ENST00000487245 DDRGK1Q96HY6 314 aa33.78■■■■□ 3
HLA-C-208ENST00000487245 BCAR3O75815 825 aa33.78■■■■□ 3
HLA-C-208ENST00000487245 HDGFP51858 240 aaKnown RBP33.78■■■■□ 3
HLA-C-208ENST00000487245 GGNBP2Q9H3C7 697 aa33.78■■■■□ 3
HLA-C-208ENST00000487245 ZMYM3Q14202 1370 aa33.77■■■■□ 3
HLA-C-208ENST00000487245 NLRP1Q9C000 1473 aa33.76■■■■□ 3
HLA-C-208ENST00000487245 ADGRB2O60241 1585 aa33.76■■■■□ 3
HLA-C-208ENST00000487245 NEUROD2Q15784 382 aa33.75■■■□□ 2.99
HLA-C-208ENST00000487245 SKAP1Q86WV1 359 aa33.74■■■□□ 2.99
HLA-C-208ENST00000487245 RRP7AQ9Y3A4 280 aaKnown RBP33.74■■■□□ 2.99
HLA-C-208ENST00000487245 ATP7BP35670 1465 aa33.73■■■□□ 2.99
HLA-C-208ENST00000487245 NBR1Q14596 966 aa33.73■■■□□ 2.99
HLA-C-208ENST00000487245 FAM161AQ3B820 660 aa33.73■■■□□ 2.99
HLA-C-208ENST00000487245 COL3A1P02461 1466 aaPredicted RBP33.73■■■□□ 2.99
HLA-C-208ENST00000487245 CABP1Q9NZU7 370 aa33.72■■■□□ 2.99
HLA-C-208ENST00000487245 KIF20BQ96Q89 1820 aa33.72■■■□□ 2.99
HLA-C-208ENST00000487245 MYH16Q9H6N6 1097 aa33.71■■■□□ 2.99
HLA-C-208ENST00000487245 DEKP35659 375 aaKnown RBP33.71■■■□□ 2.99
HLA-C-208ENST00000487245 SIRT1Q96EB6 747 aa33.71■■■□□ 2.99
HLA-C-208ENST00000487245 AAMPQ13685 434 aa33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms