RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 EFCAB5A4FU69 1503 aa19.95■□□□□ 0.78
COL7A1-210ENST00000487017 TRAK2O60296 914 aa19.94■□□□□ 0.78
COL7A1-210ENST00000487017 NASPP49321 788 aaPredicted RBP19.94■□□□□ 0.78
COL7A1-210ENST00000487017 HFM1A2PYH4 1435 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 NBPF8Q3BBV2 869 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 KIAA1107Q9UPP5 1409 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 GPS2Q13227 327 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 SASS6Q6UVJ0 657 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 NCAPD3P42695 1498 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 TPM2P07951 284 aa19.93■□□□□ 0.78
COL7A1-210ENST00000487017 PNISRQ8TF01 805 aaKnown RBP19.93■□□□□ 0.78
COL7A1-210ENST00000487017 SCAPERQ9BY12 1400 aa19.92■□□□□ 0.78
COL7A1-210ENST00000487017 BACH2Q9BYV9 841 aa19.92■□□□□ 0.78
COL7A1-210ENST00000487017 AQRO60306 1485 aaKnown RBP eCLIP19.91■□□□□ 0.78
COL7A1-210ENST00000487017 TMEM132EQ6IEE7 984 aa19.91■□□□□ 0.78
COL7A1-210ENST00000487017 ARHGAP5Q13017 1502 aa19.9■□□□□ 0.78
COL7A1-210ENST00000487017 CCDC39Q9UFE4 941 aa19.9■□□□□ 0.78
COL7A1-210ENST00000487017 TIAM1Q13009 1591 aa19.9■□□□□ 0.78
COL7A1-210ENST00000487017 ZNF771Q7L3S4 317 aaPredicted RBP19.9■□□□□ 0.78
COL7A1-210ENST00000487017 EXOSC9Q06265 439 aaKnown RBP19.9■□□□□ 0.78
COL7A1-210ENST00000487017 NBPF1Q3BBV0 1214 aa19.89■□□□□ 0.78
COL7A1-210ENST00000487017 CFAP70Q5T0N1 1121 aa19.89■□□□□ 0.78
COL7A1-210ENST00000487017 HOOK1Q9UJC3 728 aaKnown RBP19.89■□□□□ 0.78
COL7A1-210ENST00000487017 PRXQ9BXM0 1461 aa19.89■□□□□ 0.78
COL7A1-210ENST00000487017 TRDNQ13061 729 aa19.89■□□□□ 0.77
COL7A1-210ENST00000487017 WDR97A6NE52 1622 aa19.89■□□□□ 0.77
COL7A1-210ENST00000487017 UBTFL1P0CB47 393 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-210ENST00000487017 NINLQ9Y2I6 1382 aa19.89■□□□□ 0.77
COL7A1-210ENST00000487017 CCDC70Q6NSX1 233 aa19.89■□□□□ 0.77
COL7A1-210ENST00000487017 HOMER1Q86YM7 354 aa19.88■□□□□ 0.77
COL7A1-210ENST00000487017 APPP05067 770 aa19.88■□□□□ 0.77
COL7A1-210ENST00000487017 CCDC73Q6ZRK6 1079 aa19.88■□□□□ 0.77
COL7A1-210ENST00000487017 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-210ENST00000487017 BCAR3O75815 825 aa19.87■□□□□ 0.77
COL7A1-210ENST00000487017 GCC1Q96CN9 775 aa19.87■□□□□ 0.77
COL7A1-210ENST00000487017 RAD21O60216 631 aa19.86■□□□□ 0.77
COL7A1-210ENST00000487017 ANKRD20A12PQ8NF67 263 aa19.86■□□□□ 0.77
COL7A1-210ENST00000487017 FBXO3Q9UK99 471 aa19.86■□□□□ 0.77
COL7A1-210ENST00000487017 RABEP1Q15276 862 aa19.86■□□□□ 0.77
COL7A1-210ENST00000487017 IFT57Q9NWB7 429 aa19.86■□□□□ 0.77
COL7A1-210ENST00000487017 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-210ENST00000487017 PATL2C9JE40 543 aaKnown RBP19.85■□□□□ 0.77
COL7A1-210ENST00000487017 MBD3O95983 291 aa19.85■□□□□ 0.77
COL7A1-210ENST00000487017 CNTROBQ8N137 903 aa19.85■□□□□ 0.77
COL7A1-210ENST00000487017 PSME1Q06323 249 aa19.85■□□□□ 0.77
COL7A1-210ENST00000487017 GNAI3P08754 354 aa19.84■□□□□ 0.77
COL7A1-210ENST00000487017 CAVIN1Q6NZI2 390 aaKnown RBP19.84■□□□□ 0.77
COL7A1-210ENST00000487017 BRPF3Q9ULD4 1205 aa19.84■□□□□ 0.77
COL7A1-210ENST00000487017 IPO7O95373 1038 aaKnown RBP19.84■□□□□ 0.77
COL7A1-210ENST00000487017 C9orf84Q5VXU9 1444 aa19.84■□□□□ 0.77
COL7A1-210ENST00000487017 R3HCC1Q9Y3T6 440 aaKnown RBP19.84■□□□□ 0.77
COL7A1-210ENST00000487017 GRIN2BQ13224 1484 aa19.84■□□□□ 0.77
COL7A1-210ENST00000487017 PRKAR2BP31323 418 aa19.84■□□□□ 0.77
COL7A1-210ENST00000487017 TOP2BQ02880 1626 aa19.83■□□□□ 0.77
COL7A1-210ENST00000487017 MCM2P49736 904 aa19.83■□□□□ 0.77
COL7A1-210ENST00000487017 NOB1Q9ULX3 412 aaKnown RBP19.83■□□□□ 0.77
COL7A1-210ENST00000487017 PSMA5P28066 241 aa19.83■□□□□ 0.77
COL7A1-210ENST00000487017 CCDC184Q52MB2 194 aa19.83■□□□□ 0.77
COL7A1-210ENST00000487017 LETM1O95202 739 aaPredicted RBP19.83■□□□□ 0.76
COL7A1-210ENST00000487017 NFXL1Q6ZNB6 911 aa19.83■□□□□ 0.76
COL7A1-210ENST00000487017 EVA1CP58658 441 aa19.83■□□□□ 0.76
COL7A1-210ENST00000487017 RNF214Q8ND24 703 aa19.83■□□□□ 0.76
COL7A1-210ENST00000487017 CCDC47Q96A33 483 aaKnown RBP19.83■□□□□ 0.76
COL7A1-210ENST00000487017 TEX35Q5T0J7 233 aa19.82■□□□□ 0.76
COL7A1-210ENST00000487017 TWISTNBQ3B726 338 aaPredicted RBP19.82■□□□□ 0.76
COL7A1-210ENST00000487017 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
COL7A1-210ENST00000487017 ERBINQ96RT1 1412 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 FOSBP53539 338 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 NEK4P51957 841 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 RIC3Q7Z5B4 369 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 AMOTL1Q8IY63 956 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 FBXW7Q969H0 707 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 PCMTD1Q96MG8 357 aaPredicted RBP19.81■□□□□ 0.76
COL7A1-210ENST00000487017 CCDC30Q5VVM6 783 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 SETQ01105 290 aaPredicted RBP19.81■□□□□ 0.76
COL7A1-210ENST00000487017 WDR63Q8IWG1 891 aa19.81■□□□□ 0.76
COL7A1-210ENST00000487017 CT47B1P0C2W7 299 aaPredicted RBP19.8■□□□□ 0.76
COL7A1-210ENST00000487017 TSR2Q969E8 191 aaKnown RBP19.8■□□□□ 0.76
COL7A1-210ENST00000487017 C1orf115Q9H7X2 142 aa19.8■□□□□ 0.76
COL7A1-210ENST00000487017 PRPF40AO75400 957 aaKnown RBP19.8■□□□□ 0.76
COL7A1-210ENST00000487017 CCDC173Q0VFZ6 552 aa19.79■□□□□ 0.76
COL7A1-210ENST00000487017 ERICH2A1L162 156 aa19.79■□□□□ 0.76
COL7A1-210ENST00000487017 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.79■□□□□ 0.76
COL7A1-210ENST00000487017 HECW1Q76N89 1606 aa19.79■□□□□ 0.76
COL7A1-210ENST00000487017 NAT10Q9H0A0 1025 aaKnown RBP19.79■□□□□ 0.76
COL7A1-210ENST00000487017 TSPY26PQ9H489 355 aa19.79■□□□□ 0.76
COL7A1-210ENST00000487017 CLASRPQ8N2M8 674 aaKnown RBP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 AFAP1Q8N556 730 aa19.78■□□□□ 0.76
COL7A1-210ENST00000487017 NOL10Q9BSC4 688 aaKnown RBP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 SAFBQ15424 915 aaKnown RBP eCLIP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 RALYLQ86SE5 291 aaKnown RBP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 SURF6O75683 361 aaKnown RBP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 MSH5O43196 834 aa19.78■□□□□ 0.76
COL7A1-210ENST00000487017 DAPK1P53355 1430 aa19.78■□□□□ 0.76
COL7A1-210ENST00000487017 MTERF4Q7Z6M4 381 aaKnown RBP19.78■□□□□ 0.76
COL7A1-210ENST00000487017 GAS2L2Q8NHY3 880 aa19.78■□□□□ 0.76
COL7A1-210ENST00000487017 NEUROD6Q96NK8 337 aa19.78■□□□□ 0.76
COL7A1-210ENST00000487017 SUPT6HQ7KZ85 1726 aaKnown RBP19.77■□□□□ 0.76
COL7A1-210ENST00000487017 AIMP1Q12904 312 aaKnown RBP19.77■□□□□ 0.76
COL7A1-210ENST00000487017 ARGLU1Q9NWB6 273 aaPredicted RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms