RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 ADAMTS2O95450 1211 aa28.63■■■□□ 2.17
COL27A1-205ENST00000485397 LRPPRCP42704 1394 aaKnown RBP28.62■■■□□ 2.17
COL27A1-205ENST00000485397 ESCO1Q5FWF5 840 aa28.61■■■□□ 2.17
COL27A1-205ENST00000485397 IFT172Q9UG01 1749 aa28.6■■■□□ 2.17
COL27A1-205ENST00000485397 UPF1Q92900 1129 aaKnown RBP eCLIP28.6■■■□□ 2.17
COL27A1-205ENST00000485397 TECPR2O15040 1411 aa28.6■■■□□ 2.17
COL27A1-205ENST00000485397 QTRT2Q9H974 415 aaKnown RBP28.59■■■□□ 2.17
COL27A1-205ENST00000485397 CDC42BPGQ6DT37 1551 aa28.58■■■□□ 2.17
COL27A1-205ENST00000485397 NGLY1Q96IV0 654 aa28.58■■■□□ 2.17
COL27A1-205ENST00000485397 ABCC11Q96J66 1382 aa28.58■■■□□ 2.17
COL27A1-205ENST00000485397 PLEKHH1Q9ULM0 1364 aa28.58■■■□□ 2.17
COL27A1-205ENST00000485397 PIK3C2GO75747 1445 aa28.58■■■□□ 2.17
COL27A1-205ENST00000485397 NUTM2FA1L443 756 aa28.57■■■□□ 2.16
COL27A1-205ENST00000485397 CDK12Q9NYV4 1490 aaPredicted RBP28.56■■■□□ 2.16
COL27A1-205ENST00000485397 NPHP3Q7Z494 1330 aa28.54■■■□□ 2.16
COL27A1-205ENST00000485397 RBM6P78332 1123 aaKnown RBP28.54■■■□□ 2.16
COL27A1-205ENST00000485397 ACIN1Q9UKV3 1341 aaKnown RBP28.53■■■□□ 2.16
COL27A1-205ENST00000485397 FOXO3O43524 673 aa28.53■■■□□ 2.16
COL27A1-205ENST00000485397 XPCQ01831 940 aaPredicted RBP28.53■■■□□ 2.16
COL27A1-205ENST00000485397 YTHDC2Q9H6S0 1430 aaKnown RBP28.52■■■□□ 2.16
COL27A1-205ENST00000485397 C14orf93Q9H972 538 aaKnown RBP28.51■■■□□ 2.15
COL27A1-205ENST00000485397 RGS12O14924 1447 aa28.5■■■□□ 2.15
COL27A1-205ENST00000485397 KNDC1Q76NI1 1749 aa28.49■■■□□ 2.15
COL27A1-205ENST00000485397 PXDNQ92626 1479 aa28.49■■■□□ 2.15
COL27A1-205ENST00000485397 CFAP70Q5T0N1 1121 aa28.49■■■□□ 2.15
COL27A1-205ENST00000485397 RAB3GAP2Q9H2M9 1393 aa28.49■■■□□ 2.15
COL27A1-205ENST00000485397 USP21Q9UK80 565 aa28.48■■■□□ 2.15
COL27A1-205ENST00000485397 COL22A1Q8NFW1 1626 aaPredicted RBP28.47■■■□□ 2.15
COL27A1-205ENST00000485397 SIRT1Q96EB6 747 aa28.46■■■□□ 2.15
COL27A1-205ENST00000485397 NRXN1Q9ULB1 1477 aa28.46■■■□□ 2.15
COL27A1-205ENST00000485397 FNBP4Q8N3X1 1017 aaPredicted RBP28.45■■■□□ 2.14
COL27A1-205ENST00000485397 MYOM2P54296 1465 aa28.45■■■□□ 2.14
COL27A1-205ENST00000485397 DHX57Q6P158 1386 aaKnown RBP28.42■■■□□ 2.14
COL27A1-205ENST00000485397 TRPC5Q9UL62 973 aaPredicted RBP28.42■■■□□ 2.14
COL27A1-205ENST00000485397 FMN2Q9NZ56 1722 aa28.41■■■□□ 2.14
COL27A1-205ENST00000485397 SAFB2Q14151 953 aaKnown RBP eCLIP28.39■■■□□ 2.14
COL27A1-205ENST00000485397 PRAM1Q96QH2 718 aa28.37■■■□□ 2.13
COL27A1-205ENST00000485397 ATRNO75882 1429 aa28.36■■■□□ 2.13
COL27A1-205ENST00000485397 KRT28Q7Z3Y7 464 aa28.36■■■□□ 2.13
COL27A1-205ENST00000485397 SPATA31A3Q5VYP0 1347 aa28.36■■■□□ 2.13
COL27A1-205ENST00000485397 PHF8Q9UPP1 1060 aa28.34■■■□□ 2.13
COL27A1-205ENST00000485397 BCL9LQ86UU0 1499 aa28.34■■■□□ 2.13
COL27A1-205ENST00000485397 KIF1AQ12756 1690 aa28.33■■■□□ 2.13
COL27A1-205ENST00000485397 POGKQ9P215 609 aa28.32■■■□□ 2.12
COL27A1-205ENST00000485397 KDM2AQ9Y2K7 1162 aa28.31■■■□□ 2.12
COL27A1-205ENST00000485397 RGPD8O14715 1765 aaPredicted RBP28.29■■■□□ 2.12
COL27A1-205ENST00000485397 MARF1Q9Y4F3 1742 aaKnown RBP28.29■■■□□ 2.12
COL27A1-205ENST00000485397 DLC1Q96QB1 1528 aa28.28■■■□□ 2.12
COL27A1-205ENST00000485397 TRAK1Q9UPV9 953 aa28.28■■■□□ 2.12
COL27A1-205ENST00000485397 PSME1Q06323 249 aa28.27■■■□□ 2.12
COL27A1-205ENST00000485397 DCAF11Q8TEB1 546 aa28.27■■■□□ 2.12
COL27A1-205ENST00000485397 ADGRB1O14514 1584 aa28.27■■■□□ 2.12
COL27A1-205ENST00000485397 ATAD2Q6PL18 1390 aa28.26■■■□□ 2.12
COL27A1-205ENST00000485397 PLEKHG5O94827 1062 aa28.25■■■□□ 2.11
COL27A1-205ENST00000485397 GJD4Q96KN9 370 aaPredicted RBP28.25■■■□□ 2.11
COL27A1-205ENST00000485397 TNS3Q68CZ2 1445 aa28.25■■■□□ 2.11
COL27A1-205ENST00000485397 PMFBP1Q8TBY8 1022 aa28.24■■■□□ 2.11
COL27A1-205ENST00000485397 CABLES1Q8TDN4 633 aa28.24■■■□□ 2.11
COL27A1-205ENST00000485397 HIRIP3Q9BW71 556 aaPredicted RBP28.24■■■□□ 2.11
COL27A1-205ENST00000485397 UNC5CLQ8IV45 518 aa28.23■■■□□ 2.11
COL27A1-205ENST00000485397 HRCP23327 699 aa28.22■■■□□ 2.11
COL27A1-205ENST00000485397 LMOD2Q6P5Q4 547 aa28.22■■■□□ 2.11
COL27A1-205ENST00000485397 SLIT2O94813 1529 aa28.22■■■□□ 2.11
COL27A1-205ENST00000485397 HAP1P54257 671 aaPredicted RBP28.21■■■□□ 2.11
COL27A1-205ENST00000485397 SBNO1A3KN83 1393 aa28.21■■■□□ 2.11
COL27A1-205ENST00000485397 MINK1Q8N4C8 1332 aaPredicted RBP28.2■■■□□ 2.11
COL27A1-205ENST00000485397 ANKARQ7Z5J8 1434 aa28.2■■■□□ 2.11
COL27A1-205ENST00000485397 USP32Q8NFA0 1604 aa28.2■■■□□ 2.1
COL27A1-205ENST00000485397 ADGRB2O60241 1585 aa28.18■■■□□ 2.1
COL27A1-205ENST00000485397 PRR36Q9H6K5 1346 aa28.17■■■□□ 2.1
COL27A1-205ENST00000485397 RALGAPBQ86X10 1494 aa28.16■■■□□ 2.1
COL27A1-205ENST00000485397 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.16■■■□□ 2.1
COL27A1-205ENST00000485397 STAC3Q96MF2 364 aa28.15■■■□□ 2.1
COL27A1-205ENST00000485397 ARHGEF10O15013 1369 aa28.14■■■□□ 2.1
COL27A1-205ENST00000485397 GLI3P10071 1580 aa28.14■■■□□ 2.1
COL27A1-205ENST00000485397 WASLO00401 505 aaPredicted RBP28.13■■■□□ 2.09
COL27A1-205ENST00000485397 EIF3AQ14152 1382 aaKnown RBP28.1■■■□□ 2.09
COL27A1-205ENST00000485397 TULP4Q9NRJ4 1543 aa28.09■■■□□ 2.09
COL27A1-205ENST00000485397 VPS72Q15906 364 aa28.09■■■□□ 2.09
COL27A1-205ENST00000485397 FAM83GA6ND36 823 aa28.08■■■□□ 2.09
COL27A1-205ENST00000485397 ABCA3Q99758 1704 aa28.08■■■□□ 2.09
COL27A1-205ENST00000485397 GPRASP1Q5JY77 1395 aa28.08■■■□□ 2.09
COL27A1-205ENST00000485397 CCDC9Q9Y3X0 531 aaKnown RBP28.06■■■□□ 2.08
COL27A1-205ENST00000485397 TRPM3Q9HCF6 1732 aaPredicted RBP28.06■■■□□ 2.08
COL27A1-205ENST00000485397 CCDC125Q86Z20 511 aa28.05■■■□□ 2.08
COL27A1-205ENST00000485397 SEPT12Q8IYM1 358 aa28.05■■■□□ 2.08
COL27A1-205ENST00000485397 NGDNQ8NEJ9 315 aaKnown RBP28.05■■■□□ 2.08
COL27A1-205ENST00000485397 PLCH1Q4KWH8 1693 aa28.04■■■□□ 2.08
COL27A1-205ENST00000485397 ARHGEF28Q8N1W1 1705 aaKnown RBP28.02■■■□□ 2.08
COL27A1-205ENST00000485397 NWD2Q9ULI1 1742 aa28.02■■■□□ 2.08
COL27A1-205ENST00000485397 NUDT16Q96DE0 195 aaKnown RBP28.01■■■□□ 2.07
COL27A1-205ENST00000485397 ALS2Q96Q42 1657 aa28■■■□□ 2.07
COL27A1-205ENST00000485397 PAK3O75914 559 aaPredicted RBP28■■■□□ 2.07
COL27A1-205ENST00000485397 ONECUT3O60422 494 aaPredicted RBP27.99■■■□□ 2.07
COL27A1-205ENST00000485397 BTG4Q9NY30 223 aa27.99■■■□□ 2.07
COL27A1-205ENST00000485397 BRWD3Q6RI45 1802 aa27.99■■■□□ 2.07
COL27A1-205ENST00000485397 ATP7BP35670 1465 aa27.98■■■□□ 2.07
COL27A1-205ENST00000485397 CDK19Q9BWU1 502 aa27.98■■■□□ 2.07
COL27A1-205ENST00000485397 ZRANB1Q9UGI0 708 aa27.97■■■□□ 2.07
COL27A1-205ENST00000485397 BLMP54132 1417 aaPredicted RBP27.95■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms