RNA–Protein interactions for RNA: ENST00000485365.1

SFPQ-208, Transcript of splicing factor proline and glutamine rich, human

TSL 2

Gene SFPQ, Length 693 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SFPQ-208	ENST00000485365	TTC24	A2A3L6	582 aa	Predicted RBP	11.14	□□□□□ -0.63
SFPQ-208	ENST00000485365	WFS1	O76024	890 aa		11.14	□□□□□ -0.63
SFPQ-208	ENST00000485365	WNT7A	O00755	349 aa		11.13	□□□□□ -0.63
SFPQ-208	ENST00000485365	SMPD1	P17405	629 aa		11.12	□□□□□ -0.63
SFPQ-208	ENST00000485365	TRIM32	Q13049	653 aa		11.12	□□□□□ -0.63
SFPQ-208	ENST00000485365	NFX1	Q12986	1120 aa	Known RBP	11.11	□□□□□ -0.63
SFPQ-208	ENST00000485365	MMP16	P51512	607 aa		11.1	□□□□□ -0.63
SFPQ-208	ENST00000485365	GRIPAP1	Q4V328	841 aa		11.1	□□□□□ -0.63
SFPQ-208	ENST00000485365	SNIP1	Q8TAD8	396 aa	Known RBP	11.1	□□□□□ -0.63
SFPQ-208	ENST00000485365		Q3C1V9	767 aa		11.08	□□□□□ -0.64
SFPQ-208	ENST00000485365	MRGPRX2	Q96LB1	330 aa		11.08	□□□□□ -0.64
SFPQ-208	ENST00000485365	ATP13A2	Q9NQ11	1180 aa		11.07	□□□□□ -0.64
SFPQ-208	ENST00000485365		J3QL48	77 aa		11.06	□□□□□ -0.64
SFPQ-208	ENST00000485365	CD46	P15529	392 aa		11.06	□□□□□ -0.64
SFPQ-208	ENST00000485365	DXO	O77932	396 aa	Known RBP	11.05	□□□□□ -0.64
SFPQ-208	ENST00000485365	SNRPB	P14678	240 aa	Known RBP	11.05	□□□□□ -0.64
SFPQ-208	ENST00000485365	GPIHBP1	Q8IV16	184 aa		11.05	□□□□□ -0.64
SFPQ-208	ENST00000485365	WIPF1	O43516	503 aa		11.04	□□□□□ -0.64
SFPQ-208	ENST00000485365	LCE2C	Q5TA81	110 aa		11.04	□□□□□ -0.64
SFPQ-208	ENST00000485365	USB1	Q9BQ65	265 aa	Known RBP	11.04	□□□□□ -0.64
SFPQ-208	ENST00000485365	HPS1	Q92902	700 aa		11.02	□□□□□ -0.65
SFPQ-208	ENST00000485365	TRIM47	Q96LD4	638 aa		11.02	□□□□□ -0.65
SFPQ-208	ENST00000485365	KDM4A	O75164	1064 aa		11.01	□□□□□ -0.65
SFPQ-208	ENST00000485365	HLA-C	Q95604	372 aa		11.01	□□□□□ -0.65
SFPQ-208	ENST00000485365	REPIN1	Q9BWE0	567 aa	Known RBP	11.01	□□□□□ -0.65
SFPQ-208	ENST00000485365	STK17A	Q9UEE5	414 aa		11.01	□□□□□ -0.65
SFPQ-208	ENST00000485365	TERT	O14746	1132 aa	Known RBP	10.99	□□□□□ -0.65
SFPQ-208	ENST00000485365	SKOR1	P84550	965 aa		10.99	□□□□□ -0.65
SFPQ-208	ENST00000485365	SENP2	Q9HC62	589 aa		10.99	□□□□□ -0.65
SFPQ-208	ENST00000485365	RC3H1	Q5TC82	1133 aa	Known RBP	10.98	□□□□□ -0.65
SFPQ-208	ENST00000485365	INSM1	Q01101	510 aa	Predicted RBP	10.97	□□□□□ -0.65
SFPQ-208	ENST00000485365	CCDC24	Q8N4L8	307 aa		10.97	□□□□□ -0.65
SFPQ-208	ENST00000485365	NISCH	Q9Y2I1	1504 aa		10.97	□□□□□ -0.65
SFPQ-208	ENST00000485365	WNT7B	P56706	349 aa		10.96	□□□□□ -0.65
SFPQ-208	ENST00000485365	MAP2K5	Q13163	448 aa		10.96	□□□□□ -0.65
SFPQ-208	ENST00000485365	USP46	P62068	366 aa		10.95	□□□□□ -0.66
SFPQ-208	ENST00000485365	HOXA2	O43364	376 aa		10.94	□□□□□ -0.66
SFPQ-208	ENST00000485365	MDM2	Q00987	491 aa	Predicted RBP	10.94	□□□□□ -0.66
SFPQ-208	ENST00000485365	KIFC2	Q96AC6	838 aa		10.94	□□□□□ -0.66
SFPQ-208	ENST00000485365	IRF6	O14896	467 aa		10.92	□□□□□ -0.66
SFPQ-208	ENST00000485365	PLCB2	Q00722	1185 aa		10.92	□□□□□ -0.66
SFPQ-208	ENST00000485365	GUCA2A	Q02747	115 aa		10.92	□□□□□ -0.66
SFPQ-208	ENST00000485365	JUND	P17535	347 aa		10.91	□□□□□ -0.66
SFPQ-208	ENST00000485365	ALDH1A1	P00352	501 aa		10.9	□□□□□ -0.66
SFPQ-208	ENST00000485365	SYMPK	Q92797	1274 aa	Known RBP	10.89	□□□□□ -0.67
SFPQ-208	ENST00000485365	SIAH2	O43255	324 aa		10.87	□□□□□ -0.67
SFPQ-208	ENST00000485365	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.87	□□□□□ -0.67
SFPQ-208	ENST00000485365	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.85	□□□□□ -0.67
SFPQ-208	ENST00000485365	NUDT12	Q9BQG2	462 aa		10.85	□□□□□ -0.67
SFPQ-208	ENST00000485365	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.85	□□□□□ -0.67
SFPQ-208	ENST00000485365	BMP1	P13497	986 aa		10.84	□□□□□ -0.67
SFPQ-208	ENST00000485365	TRIM46	Q7Z4K8	759 aa		10.84	□□□□□ -0.67
SFPQ-208	ENST00000485365	RETREG3	Q86VR2	466 aa		10.84	□□□□□ -0.67
SFPQ-208	ENST00000485365	EHBP1	Q8NDI1	1231 aa		10.84	□□□□□ -0.67
SFPQ-208	ENST00000485365	CCDC102A	Q96A19	550 aa		10.84	□□□□□ -0.67
SFPQ-208	ENST00000485365	NXF1	Q9UBU9	619 aa	Known RBP	10.83	□□□□□ -0.68
SFPQ-208	ENST00000485365	SLC16A10	Q8TF71	515 aa		10.82	□□□□□ -0.68
SFPQ-208	ENST00000485365	GPCPD1	Q9NPB8	672 aa		10.82	□□□□□ -0.68
SFPQ-208	ENST00000485365	CAPN5	O15484	640 aa	Predicted RBP	10.81	□□□□□ -0.68
SFPQ-208	ENST00000485365	CLCN1	P35523	988 aa		10.8	□□□□□ -0.68
SFPQ-208	ENST00000485365	WASF2	Q9Y6W5	498 aa		10.8	□□□□□ -0.68
SFPQ-208	ENST00000485365	SH3BP2	P78314	561 aa		10.79	□□□□□ -0.68
SFPQ-208	ENST00000485365	NUTM1	Q86Y26	1132 aa		10.79	□□□□□ -0.68
SFPQ-208	ENST00000485365	PCDHGC3	Q9UN70	934 aa		10.79	□□□□□ -0.68
SFPQ-208	ENST00000485365	KDM2A	Q9Y2K7	1162 aa		10.79	□□□□□ -0.68
SFPQ-208	ENST00000485365	LOR	P23490	312 aa	Predicted RBP	10.78	□□□□□ -0.68
SFPQ-208	ENST00000485365	GMPR	P36959	345 aa		10.78	□□□□□ -0.68
SFPQ-208	ENST00000485365	CCNYL3	P0C7X3	344 aa		10.77	□□□□□ -0.69
SFPQ-208	ENST00000485365	FDX1	P10109	184 aa		10.77	□□□□□ -0.69
SFPQ-208	ENST00000485365	MS4A1	P11836	297 aa		10.76	□□□□□ -0.69
SFPQ-208	ENST00000485365	NPAS3	Q8IXF0	933 aa		10.76	□□□□□ -0.69
SFPQ-208	ENST00000485365	C6orf229	H3BNL8	230 aa		10.75	□□□□□ -0.69
SFPQ-208	ENST00000485365	VEGFB	P49765	207 aa		10.75	□□□□□ -0.69
SFPQ-208	ENST00000485365	IRF7	Q92985	503 aa		10.75	□□□□□ -0.69
SFPQ-208	ENST00000485365		H3BM21	787 aa		10.74	□□□□□ -0.69
SFPQ-208	ENST00000485365	TULP1	O00294	542 aa	Predicted RBP	10.74	□□□□□ -0.69
SFPQ-208	ENST00000485365	HAP1	P54257	671 aa	Predicted RBP	10.74	□□□□□ -0.69
SFPQ-208	ENST00000485365	UNC93B1	Q9H1C4	597 aa		10.74	□□□□□ -0.69
SFPQ-208	ENST00000485365	TLL2	Q9Y6L7	1015 aa		10.74	□□□□□ -0.69
SFPQ-208	ENST00000485365	FAM181B	A6NEQ2	426 aa		10.73	□□□□□ -0.69
SFPQ-208	ENST00000485365	PTPRN	Q16849	979 aa		10.73	□□□□□ -0.69
SFPQ-208	ENST00000485365	LINC01559	Q495D7	138 aa		10.73	□□□□□ -0.69
SFPQ-208	ENST00000485365	ZSCAN1	Q8NBB4	408 aa		10.72	□□□□□ -0.69
SFPQ-208	ENST00000485365	ZFP42	Q96MM3	310 aa		10.72	□□□□□ -0.69
SFPQ-208	ENST00000485365	EVA1B	Q9NVM1	165 aa		10.72	□□□□□ -0.69
SFPQ-208	ENST00000485365	ERBB4	Q15303	1308 aa		10.72	□□□□□ -0.69
SFPQ-208	ENST00000485365	KRI1	Q8N9T8	703 aa	Known RBP	10.71	□□□□□ -0.69
SFPQ-208	ENST00000485365	BAP1	Q92560	729 aa		10.71	□□□□□ -0.69
SFPQ-208	ENST00000485365	SPIRE2	Q8WWL2	714 aa		10.7	□□□□□ -0.7
SFPQ-208	ENST00000485365	NDUFV2	P19404	249 aa		10.69	□□□□□ -0.7
SFPQ-208	ENST00000485365	KCNH2	Q12809	1159 aa		10.69	□□□□□ -0.7
SFPQ-208	ENST00000485365	NNT	Q13423	1086 aa		10.68	□□□□□ -0.7
SFPQ-208	ENST00000485365	ZNF511	Q8NB15	262 aa		10.68	□□□□□ -0.7
SFPQ-208	ENST00000485365	MOXD2P	A6NHM9	499 aa		10.67	□□□□□ -0.7
SFPQ-208	ENST00000485365	SSTR3	P32745	418 aa	Predicted RBP	10.67	□□□□□ -0.7
SFPQ-208	ENST00000485365	MPND	Q8N594	471 aa		10.67	□□□□□ -0.7
SFPQ-208	ENST00000485365	PRR7	Q8TB68	274 aa		10.67	□□□□□ -0.7
SFPQ-208	ENST00000485365	VARS	P26640	1264 aa	Known RBP	10.66	□□□□□ -0.7
SFPQ-208	ENST00000485365	MRPL14	Q6P1L8	145 aa	Known RBP	10.66	□□□□□ -0.7
SFPQ-208	ENST00000485365	PLEKHG3	A1L390	1219 aa		10.65	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms