RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 MMP16P51512 607 aa8.62□□□□□ -1.03
VPS50-217ENST00000485140 GIGYF2Q6Y7W6 1299 aaKnown RBP8.62□□□□□ -1.03
VPS50-217ENST00000485140 TRIM66O15016 1216 aa8.61□□□□□ -1.03
VPS50-217ENST00000485140 RETREG3Q86VR2 466 aa8.61□□□□□ -1.03
VPS50-217ENST00000485140 FCF1Q9Y324 198 aaKnown RBP8.6□□□□□ -1.03
VPS50-217ENST00000485140 DXOO77932 396 aaKnown RBP8.59□□□□□ -1.03
VPS50-217ENST00000485140 FDX1P10109 184 aa8.59□□□□□ -1.03
VPS50-217ENST00000485140 ZNF697Q5TEC3 545 aa8.59□□□□□ -1.03
VPS50-217ENST00000485140 FAM160A2Q8N612 972 aaPredicted RBP8.59□□□□□ -1.03
VPS50-217ENST00000485140 RNF19BQ6ZMZ0 732 aa8.57□□□□□ -1.04
VPS50-217ENST00000485140 PARP9Q8IXQ6 854 aa8.57□□□□□ -1.04
VPS50-217ENST00000485140 BEGAINQ9BUH8 593 aa8.57□□□□□ -1.04
VPS50-217ENST00000485140 PPEF1O14829 653 aaPredicted RBP8.56□□□□□ -1.04
VPS50-217ENST00000485140 DGAT1O75907 488 aa8.56□□□□□ -1.04
VPS50-217ENST00000485140 JUNDP17535 347 aa8.56□□□□□ -1.04
VPS50-217ENST00000485140 LIAT1Q6ZQX7 453 aa8.56□□□□□ -1.04
VPS50-217ENST00000485140 SPIRE2Q8WWL2 714 aa8.56□□□□□ -1.04
VPS50-217ENST00000485140 REPIN1Q9BWE0 567 aaKnown RBP8.56□□□□□ -1.04
VPS50-217ENST00000485140 PDE4DQ08499 809 aa8.55□□□□□ -1.04
VPS50-217ENST00000485140 DESI1Q6ICB0 168 aa8.55□□□□□ -1.04
VPS50-217ENST00000485140 RSPH6AQ9H0K4 717 aa8.55□□□□□ -1.04
VPS50-217ENST00000485140 C6orf229H3BNL8 230 aa8.54□□□□□ -1.04
VPS50-217ENST00000485140 PRPF38BQ5VTL8 546 aaKnown RBP8.54□□□□□ -1.04
VPS50-217ENST00000485140 MTMR2Q13614 643 aa8.53□□□□□ -1.04
VPS50-217ENST00000485140 TUSC1Q2TAM9 212 aa8.53□□□□□ -1.04
VPS50-217ENST00000485140 PKDCCQ504Y2 493 aa8.53□□□□□ -1.04
VPS50-217ENST00000485140 TRAF7Q6Q0C0 670 aa8.53□□□□□ -1.04
VPS50-217ENST00000485140 MS4A1P11836 297 aa8.52□□□□□ -1.05
VPS50-217ENST00000485140 WNT7BP56706 349 aa8.52□□□□□ -1.05
VPS50-217ENST00000485140 PTPRNQ16849 979 aa8.52□□□□□ -1.05
VPS50-217ENST00000485140 TBC1D2Q9BYX2 928 aa8.52□□□□□ -1.05
VPS50-217ENST00000485140 SPTLC1O15269 473 aa8.51□□□□□ -1.05
VPS50-217ENST00000485140 ZBTB3Q9H5J0 574 aa8.51□□□□□ -1.05
VPS50-217ENST00000485140 PRDM9Q9NQV7 894 aa8.51□□□□□ -1.05
VPS50-217ENST00000485140 GDF9O60383 454 aa8.5□□□□□ -1.05
VPS50-217ENST00000485140 TRIM32Q13049 653 aa8.5□□□□□ -1.05
VPS50-217ENST00000485140 PLA2G2CQ5R387 149 aa8.5□□□□□ -1.05
VPS50-217ENST00000485140 RSBN1LQ6PCB5 846 aaPredicted RBP8.5□□□□□ -1.05
VPS50-217ENST00000485140 EMID1Q96A84 441 aaPredicted RBP8.5□□□□□ -1.05
VPS50-217ENST00000485140 NUDT12Q9BQG2 462 aa8.5□□□□□ -1.05
VPS50-217ENST00000485140 MOXD2PA6NHM9 499 aa8.49□□□□□ -1.05
VPS50-217ENST00000485140 WNT7AO00755 349 aa8.49□□□□□ -1.05
VPS50-217ENST00000485140 CYP4X1Q8N118 509 aa8.49□□□□□ -1.05
VPS50-217ENST00000485140 SLC24A3Q9HC58 644 aa8.49□□□□□ -1.05
VPS50-217ENST00000485140 CCNYL3P0C7X3 344 aa8.48□□□□□ -1.05
VPS50-217ENST00000485140 CCDC24Q8N4L8 307 aa8.48□□□□□ -1.05
VPS50-217ENST00000485140 DDRGK1Q96HY6 314 aa8.48□□□□□ -1.05
VPS50-217ENST00000485140 TRIM67Q6ZTA4 783 aa8.47□□□□□ -1.05
VPS50-217ENST00000485140 RIC3Q7Z5B4 369 aa8.47□□□□□ -1.05
VPS50-217ENST00000485140 PCDHGC3Q9UN70 934 aa8.47□□□□□ -1.05
VPS50-217ENST00000485140 GUCA2AQ02747 115 aa8.46□□□□□ -1.06
VPS50-217ENST00000485140 CTC1Q2NKJ3 1217 aa8.46□□□□□ -1.06
VPS50-217ENST00000485140 PRR7Q8TB68 274 aa8.46□□□□□ -1.06
VPS50-217ENST00000485140 HLA-CQ95604 372 aa8.46□□□□□ -1.06
VPS50-217ENST00000485140 FAM187AA6NFU0 413 aa8.45□□□□□ -1.06
VPS50-217ENST00000485140 FOXC1Q12948 553 aa8.45□□□□□ -1.06
VPS50-217ENST00000485140 SNIP1Q8TAD8 396 aaKnown RBP8.45□□□□□ -1.06
VPS50-217ENST00000485140 PKD2L1Q9P0L9 805 aa8.45□□□□□ -1.06
VPS50-217ENST00000485140 TTC24A2A3L6 582 aaPredicted RBP8.44□□□□□ -1.06
VPS50-217ENST00000485140 NDUFV2P19404 249 aa8.44□□□□□ -1.06
VPS50-217ENST00000485140 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
VPS50-217ENST00000485140 TNFRSF10AO00220 468 aa8.43□□□□□ -1.06
VPS50-217ENST00000485140 CRIPAKQ8N1N5 446 aa8.43□□□□□ -1.06
VPS50-217ENST00000485140 EVA1BQ9NVM1 165 aa8.43□□□□□ -1.06
VPS50-217ENST00000485140 TOR4AQ9NXH8 423 aa8.43□□□□□ -1.06
VPS50-217ENST00000485140 KCNH2Q12809 1159 aa8.42□□□□□ -1.06
VPS50-217ENST00000485140 MYSM1Q5VVJ2 828 aa8.42□□□□□ -1.06
VPS50-217ENST00000485140 ARMC2Q8NEN0 867 aa8.42□□□□□ -1.06
VPS50-217ENST00000485140 SYMPKQ92797 1274 aaKnown RBP8.42□□□□□ -1.06
VPS50-217ENST00000485140 NUTM2BA6NNL0 878 aaPredicted RBP8.41□□□□□ -1.06
VPS50-217ENST00000485140 NUTM2EB1AL46 878 aaPredicted RBP8.41□□□□□ -1.06
VPS50-217ENST00000485140 AVPP01185 164 aa8.41□□□□□ -1.06
VPS50-217ENST00000485140 HRCP23327 699 aa8.41□□□□□ -1.06
VPS50-217ENST00000485140 CLK2P49760 499 aaKnown RBP8.41□□□□□ -1.06
VPS50-217ENST00000485140 NUTM2DQ5VT03 806 aaPredicted RBP8.41□□□□□ -1.06
VPS50-217ENST00000485140 LYPD8Q6UX82 237 aa8.41□□□□□ -1.06
VPS50-217ENST00000485140 NUTM2AQ8IVF1 878 aaPredicted RBP8.41□□□□□ -1.06
VPS50-217ENST00000485140 SMCPP49901 116 aaPredicted RBP8.4□□□□□ -1.06
VPS50-217ENST00000485140 ZNF775Q96BV0 537 aaPredicted RBP8.4□□□□□ -1.06
VPS50-217ENST00000485140 RC3H1Q5TC82 1133 aaKnown RBP8.39□□□□□ -1.07
VPS50-217ENST00000485140 PLEKHG3A1L390 1219 aa8.38□□□□□ -1.07
VPS50-217ENST00000485140 MYT1Q01538 1121 aa8.38□□□□□ -1.07
VPS50-217ENST00000485140 SH3D19Q5HYK7 790 aa8.38□□□□□ -1.07
VPS50-217ENST00000485140 ZNF787Q6DD87 383 aa8.38□□□□□ -1.07
VPS50-217ENST00000485140 UNC93B1Q9H1C4 597 aa8.38□□□□□ -1.07
VPS50-217ENST00000485140 LILRB3O75022 631 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 VARSP26640 1264 aaKnown RBP8.37□□□□□ -1.07
VPS50-217ENST00000485140 SKIV2LQ15477 1246 aaKnown RBP8.37□□□□□ -1.07
VPS50-217ENST00000485140 MPNDQ8N594 471 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 PNMA1Q8ND90 353 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 EHBP1Q8NDI1 1231 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 MRGPRX2Q96LB1 330 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 KDM4CQ9H3R0 1056 aa8.37□□□□□ -1.07
VPS50-217ENST00000485140 AXIN1O15169 862 aa8.36□□□□□ -1.07
VPS50-217ENST00000485140 CTHP32929 405 aa8.36□□□□□ -1.07
VPS50-217ENST00000485140 NBPF14Q5TI25 921 aa8.36□□□□□ -1.07
VPS50-217ENST00000485140 GPKOWQ92917 476 aaPredicted RBP eCLIP8.36□□□□□ -1.07
VPS50-217ENST00000485140 GOPCQ9HD26 462 aa8.36□□□□□ -1.07
VPS50-217ENST00000485140 PCDHB15Q9Y5E8 787 aa8.35□□□□□ -1.07
VPS50-217ENST00000485140 CFAP99D6REC4 459 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms