RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 MSS51Q4VC12 460 aa8.39□□□□□ -1.07
PTCD3-214ENST00000483925 RNF19BQ6ZMZ0 732 aa8.39□□□□□ -1.07
PTCD3-214ENST00000483925 ZBTB24O43167 697 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-214ENST00000483925 ZNF775Q96BV0 537 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-214ENST00000483925 PRDM9Q9NQV7 894 aa8.38□□□□□ -1.07
PTCD3-214ENST00000483925 MINK1Q8N4C8 1332 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-214ENST00000483925 KDM4AO75164 1064 aa8.36□□□□□ -1.07
PTCD3-214ENST00000483925 TMEM132AQ24JP5 1023 aa8.36□□□□□ -1.07
PTCD3-214ENST00000483925 AAASQ9NRG9 546 aa8.36□□□□□ -1.07
PTCD3-214ENST00000483925 POTECB2RU33 542 aa8.35□□□□□ -1.07
PTCD3-214ENST00000483925 MDM2Q00987 491 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-214ENST00000483925 CYP4X1Q8N118 509 aa8.35□□□□□ -1.07
PTCD3-214ENST00000483925 TOR4AQ9NXH8 423 aa8.35□□□□□ -1.07
PTCD3-214ENST00000483925 ST8SIA5O15466 376 aa8.34□□□□□ -1.07
PTCD3-214ENST00000483925 USP46P62068 366 aa8.34□□□□□ -1.07
PTCD3-214ENST00000483925 MMP16P51512 607 aa8.33□□□□□ -1.08
PTCD3-214ENST00000483925 USB1Q9BQ65 265 aaKnown RBP8.33□□□□□ -1.08
PTCD3-214ENST00000483925 AVPP01185 164 aa8.31□□□□□ -1.08
PTCD3-214ENST00000483925 CRIPAKQ8N1N5 446 aa8.31□□□□□ -1.08
PTCD3-214ENST00000483925 CCDC102AQ96A19 550 aa8.31□□□□□ -1.08
PTCD3-214ENST00000483925 TTC24A2A3L6 582 aaPredicted RBP8.3□□□□□ -1.08
PTCD3-214ENST00000483925 DXOO77932 396 aaKnown RBP8.3□□□□□ -1.08
PTCD3-214ENST00000483925 CLCN1P35523 988 aa8.3□□□□□ -1.08
PTCD3-214ENST00000483925 GPCPD1Q9NPB8 672 aa8.3□□□□□ -1.08
PTCD3-214ENST00000483925 WNT7AO00755 349 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 AXIN1O15169 862 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 HOXA2O43364 376 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 TRIM32Q13049 653 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 CTC1Q2NKJ3 1217 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 C14orf37Q86TY3 774 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 KRI1Q8N9T8 703 aaKnown RBP8.29□□□□□ -1.08
PTCD3-214ENST00000483925 HLA-CQ95604 372 aa8.29□□□□□ -1.08
PTCD3-214ENST00000483925 FAM217BQ9NTX9 383 aaPredicted RBP8.28□□□□□ -1.08
PTCD3-214ENST00000483925 CCDC24Q8N4L8 307 aa8.27□□□□□ -1.09
PTCD3-214ENST00000483925 SNIP1Q8TAD8 396 aaKnown RBP8.27□□□□□ -1.09
PTCD3-214ENST00000483925 DACH1Q9UI36 760 aa8.27□□□□□ -1.09
PTCD3-214ENST00000483925 SMCPP49901 116 aaPredicted RBP8.26□□□□□ -1.09
PTCD3-214ENST00000483925 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.26□□□□□ -1.09
PTCD3-214ENST00000483925 NUTM1Q86Y26 1132 aa8.26□□□□□ -1.09
PTCD3-214ENST00000483925 GUCA2AQ02747 115 aa8.25□□□□□ -1.09
PTCD3-214ENST00000483925 MRGPRX2Q96LB1 330 aa8.25□□□□□ -1.09
PTCD3-214ENST00000483925 SMPD1P17405 629 aa8.24□□□□□ -1.09
PTCD3-214ENST00000483925 REPIN1Q9BWE0 567 aaKnown RBP8.24□□□□□ -1.09
PTCD3-214ENST00000483925 C11orf95C9JLR9 678 aaPredicted RBP8.23□□□□□ -1.09
PTCD3-214ENST00000483925 JUNDP17535 347 aa8.23□□□□□ -1.09
PTCD3-214ENST00000483925 WNT7BP56706 349 aa8.22□□□□□ -1.09
PTCD3-214ENST00000483925 RETREG3Q86VR2 466 aa8.22□□□□□ -1.09
PTCD3-214ENST00000483925 SYMPKQ92797 1274 aaKnown RBP8.22□□□□□ -1.09
PTCD3-214ENST00000483925 GMPR2Q9P2T1 348 aaKnown RBP8.22□□□□□ -1.09
PTCD3-214ENST00000483925 J3QL48 77 aa8.21□□□□□ -1.1
PTCD3-214ENST00000483925 RC3H1Q5TC82 1133 aaKnown RBP8.21□□□□□ -1.1
PTCD3-214ENST00000483925 TREML4Q6UXN2 200 aa8.21□□□□□ -1.1
PTCD3-214ENST00000483925 FDX1P10109 184 aa8.2□□□□□ -1.1
PTCD3-214ENST00000483925 SSTR3P32745 418 aaPredicted RBP8.2□□□□□ -1.1
PTCD3-214ENST00000483925 SKOR1P84550 965 aa8.2□□□□□ -1.1
PTCD3-214ENST00000483925 C6orf229H3BNL8 230 aa8.18□□□□□ -1.1
PTCD3-214ENST00000483925 BARGINQ6ZT62 677 aa8.18□□□□□ -1.1
PTCD3-214ENST00000483925 NUDT12Q9BQG2 462 aa8.18□□□□□ -1.1
PTCD3-214ENST00000483925 PCDHGC3Q9UN70 934 aa8.18□□□□□ -1.1
PTCD3-214ENST00000483925 TTLL12Q14166 644 aaPredicted RBP8.17□□□□□ -1.1
PTCD3-214ENST00000483925 SPIRE2Q8WWL2 714 aa8.17□□□□□ -1.1
PTCD3-214ENST00000483925 HPS1Q92902 700 aa8.17□□□□□ -1.1
PTCD3-214ENST00000483925 ATP13A2Q9NQ11 1180 aa8.17□□□□□ -1.1
PTCD3-214ENST00000483925 ZMYND10O75800 440 aa8.16□□□□□ -1.1
PTCD3-214ENST00000483925 LCE2AQ5TA79 106 aaPredicted RBP8.16□□□□□ -1.1
PTCD3-214ENST00000483925 PTCRAQ6ISU1 281 aaPredicted RBP8.16□□□□□ -1.1
PTCD3-214ENST00000483925 MS4A1P11836 297 aa8.15□□□□□ -1.1
PTCD3-214ENST00000483925 SENP2Q9HC62 589 aa8.15□□□□□ -1.1
PTCD3-214ENST00000483925 WFS1O76024 890 aa8.14□□□□□ -1.11
PTCD3-214ENST00000483925 ALDH1A1P00352 501 aa8.14□□□□□ -1.11
PTCD3-214ENST00000483925 CCNYL3P0C7X3 344 aa8.14□□□□□ -1.11
PTCD3-214ENST00000483925 AMHR2Q16671 573 aa8.14□□□□□ -1.11
PTCD3-214ENST00000483925 EHBP1Q8NDI1 1231 aa8.14□□□□□ -1.11
PTCD3-214ENST00000483925 MOXD2PA6NHM9 499 aa8.13□□□□□ -1.11
PTCD3-214ENST00000483925 NDUFV2P19404 249 aa8.13□□□□□ -1.11
PTCD3-214ENST00000483925 ZC3H15Q8WU90 426 aaKnown RBP8.13□□□□□ -1.11
PTCD3-214ENST00000483925 TRIM47Q96LD4 638 aa8.13□□□□□ -1.11
PTCD3-214ENST00000483925 SPDYE5A6NIY4 337 aa8.12□□□□□ -1.11
PTCD3-214ENST00000483925 SIAH2O43255 324 aa8.12□□□□□ -1.11
PTCD3-214ENST00000483925 RANGAP1P46060 587 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-214ENST00000483925 PTPRNQ16849 979 aa8.12□□□□□ -1.11
PTCD3-214ENST00000483925 GIGYF2Q6Y7W6 1299 aaKnown RBP8.12□□□□□ -1.11
PTCD3-214ENST00000483925 EVA1BQ9NVM1 165 aa8.12□□□□□ -1.11
PTCD3-214ENST00000483925 SNRPBP14678 240 aaKnown RBP8.11□□□□□ -1.11
PTCD3-214ENST00000483925 SH3BP2P78314 561 aa8.11□□□□□ -1.11
PTCD3-214ENST00000483925 PRR7Q8TB68 274 aa8.11□□□□□ -1.11
PTCD3-214ENST00000483925 KIFC2Q96AC6 838 aa8.11□□□□□ -1.11
PTCD3-214ENST00000483925 NFX1Q12986 1120 aaKnown RBP8.1□□□□□ -1.11
PTCD3-214ENST00000483925 MTMR2Q13614 643 aa8.1□□□□□ -1.11
PTCD3-214ENST00000483925 BEGAINQ9BUH8 593 aa8.1□□□□□ -1.11
PTCD3-214ENST00000483925 WASF2Q9Y6W5 498 aa8.1□□□□□ -1.11
PTCD3-214ENST00000483925 KCNH2Q12809 1159 aa8.09□□□□□ -1.11
PTCD3-214ENST00000483925 DIXDC1Q155Q3 683 aa8.09□□□□□ -1.11
PTCD3-214ENST00000483925 DESI1Q6ICB0 168 aa8.09□□□□□ -1.11
PTCD3-214ENST00000483925 UNC93B1Q9H1C4 597 aa8.09□□□□□ -1.11
PTCD3-214ENST00000483925 GJA5P36382 358 aa8.08□□□□□ -1.12
PTCD3-214ENST00000483925 BAP1Q92560 729 aa8.07□□□□□ -1.12
PTCD3-214ENST00000483925 TBC1D2Q9BYX2 928 aa8.07□□□□□ -1.12
PTCD3-214ENST00000483925 TERTO14746 1132 aaKnown RBP8.06□□□□□ -1.12
PTCD3-214ENST00000483925 CAPN5O15484 640 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms