RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NPC1L1Q9UHC9 1359 aa17.08■□□□□ 0.32
USP40-214ENST00000483519 DIP2CQ9Y2E4 1556 aa17.08■□□□□ 0.32
USP40-214ENST00000483519 NGEFQ8N5V2 710 aa17.07■□□□□ 0.32
USP40-214ENST00000483519 PDE3AQ14432 1141 aa17.07■□□□□ 0.32
USP40-214ENST00000483519 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.32
USP40-214ENST00000483519 TRPM2O94759 1503 aa17.07■□□□□ 0.32
USP40-214ENST00000483519 REREQ9P2R6 1566 aa17.07■□□□□ 0.32
USP40-214ENST00000483519 ABCA6Q8N139 1617 aa17.06■□□□□ 0.32
USP40-214ENST00000483519 BCAR3O75815 825 aa17.05■□□□□ 0.32
USP40-214ENST00000483519 POGKQ9P215 609 aa17.05■□□□□ 0.32
USP40-214ENST00000483519 PTPRTO14522 1441 aa17.05■□□□□ 0.32
USP40-214ENST00000483519 IGHDP01880 384 aa17.05■□□□□ 0.32
USP40-214ENST00000483519 MADDQ8WXG6 1647 aa17.04■□□□□ 0.32
USP40-214ENST00000483519 AEBP2Q6ZN18 517 aaPredicted RBP17.04■□□□□ 0.32
USP40-214ENST00000483519 CCDC146Q8IYE0 955 aa17.04■□□□□ 0.32
USP40-214ENST00000483519 CLUAP1Q96AJ1 413 aa17.04■□□□□ 0.32
USP40-214ENST00000483519 UPF2Q9HAU5 1272 aaKnown RBP17.04■□□□□ 0.32
USP40-214ENST00000483519 CEP152O94986 1710 aa17.04■□□□□ 0.32
USP40-214ENST00000483519 APAF1O14727 1248 aa17.03■□□□□ 0.32
USP40-214ENST00000483519 NLRP1Q9C000 1473 aa17.03■□□□□ 0.32
USP40-214ENST00000483519 SPINK5Q9NQ38 1064 aaPredicted RBP17.03■□□□□ 0.32
USP40-214ENST00000483519 ZMYM3Q14202 1370 aa17.02■□□□□ 0.32
USP40-214ENST00000483519 SCAF11Q99590 1463 aaKnown RBP17.02■□□□□ 0.32
USP40-214ENST00000483519 SPHKAPQ2M3C7 1700 aa17.02■□□□□ 0.31
USP40-214ENST00000483519 CANXP27824 592 aaKnown RBP17.02■□□□□ 0.31
USP40-214ENST00000483519 MYOM1P52179 1685 aa17.02■□□□□ 0.31
USP40-214ENST00000483519 AGLP35573 1532 aa17.02■□□□□ 0.31
USP40-214ENST00000483519 SLKQ9H2G2 1235 aaPredicted RBP17.01■□□□□ 0.31
USP40-214ENST00000483519 CENPJQ9HC77 1338 aaPredicted RBP17.01■□□□□ 0.31
USP40-214ENST00000483519 MROH1Q8NDA8 1641 aa17.01■□□□□ 0.31
USP40-214ENST00000483519 KIAA1210Q9ULL0 1709 aa17.01■□□□□ 0.31
USP40-214ENST00000483519 AAMPQ13685 434 aa17■□□□□ 0.31
USP40-214ENST00000483519 SEC24BO95487 1268 aa17■□□□□ 0.31
USP40-214ENST00000483519 ANTXR1Q9H6X2 564 aa16.99■□□□□ 0.31
USP40-214ENST00000483519 PMFBP1Q8TBY8 1022 aa16.98■□□□□ 0.31
USP40-214ENST00000483519 KDM5AP29375 1690 aaKnown RBP16.98■□□□□ 0.31
USP40-214ENST00000483519 COG6Q9Y2V7 657 aa16.97■□□□□ 0.31
USP40-214ENST00000483519 TBC1D32Q96NH3 1257 aa16.96■□□□□ 0.31
USP40-214ENST00000483519 KANK1Q14678 1352 aa16.96■□□□□ 0.3
USP40-214ENST00000483519 RRAGDQ9NQL2 400 aaPredicted RBP16.95■□□□□ 0.3
USP40-214ENST00000483519 PANK1Q8TE04 598 aa16.95■□□□□ 0.3
USP40-214ENST00000483519 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
USP40-214ENST00000483519 EFCAB6Q5THR3 1501 aa16.95■□□□□ 0.3
USP40-214ENST00000483519 KIF3BO15066 747 aa16.94■□□□□ 0.3
USP40-214ENST00000483519 ZC3H13Q5T200 1668 aaKnown RBP16.94■□□□□ 0.3
USP40-214ENST00000483519 GOLGA6L3A6NEY3 463 aa16.93■□□□□ 0.3
USP40-214ENST00000483519 TBC1D2Q9BYX2 928 aa16.92■□□□□ 0.3
USP40-214ENST00000483519 DMRT2Q9Y5R5 561 aa16.92■□□□□ 0.3
USP40-214ENST00000483519 WWC1Q8IX03 1113 aa16.91■□□□□ 0.3
USP40-214ENST00000483519 ESF1Q9H501 851 aaKnown RBP16.9■□□□□ 0.3
USP40-214ENST00000483519 MYOM2P54296 1465 aa16.9■□□□□ 0.3
USP40-214ENST00000483519 MLECQ14165 292 aa16.9■□□□□ 0.3
USP40-214ENST00000483519 SIGLEC1Q9BZZ2 1709 aa16.9■□□□□ 0.3
USP40-214ENST00000483519 FSD2A1L4K1 749 aa16.9■□□□□ 0.3
USP40-214ENST00000483519 GGT6Q6P531 493 aa16.9■□□□□ 0.3
USP40-214ENST00000483519 POLR3AO14802 1390 aaPredicted RBP16.89■□□□□ 0.3
USP40-214ENST00000483519 IFT172Q9UG01 1749 aa16.89■□□□□ 0.29
USP40-214ENST00000483519 MCM4P33991 863 aa16.88■□□□□ 0.29
USP40-214ENST00000483519 RWDD1Q9H446 243 aaPredicted RBP16.88■□□□□ 0.29
USP40-214ENST00000483519 XRCC6P12956 609 aaKnown RBP eCLIP16.88■□□□□ 0.29
USP40-214ENST00000483519 RARSP54136 660 aaKnown RBP16.88■□□□□ 0.29
USP40-214ENST00000483519 PDZRN3Q9UPQ7 1066 aa16.88■□□□□ 0.29
USP40-214ENST00000483519 CLTCL1P53675 1640 aa16.87■□□□□ 0.29
USP40-214ENST00000483519 GLIPR1L2Q4G1C9 344 aa16.87■□□□□ 0.29
USP40-214ENST00000483519 PNNQ9H307 717 aaKnown RBP16.86■□□□□ 0.29
USP40-214ENST00000483519 CLCN1P35523 988 aa16.86■□□□□ 0.29
USP40-214ENST00000483519 CHMP5Q9NZZ3 219 aa16.86■□□□□ 0.29
USP40-214ENST00000483519 PCDHB15Q9Y5E8 787 aa16.86■□□□□ 0.29
USP40-214ENST00000483519 ADAMTSL3P82987 1691 aa16.86■□□□□ 0.29
USP40-214ENST00000483519 ERVK-7P63135 1459 aa16.85■□□□□ 0.29
USP40-214ENST00000483519 KIF1BO60333 1816 aa16.83■□□□□ 0.29
USP40-214ENST00000483519 ARHGAP31Q2M1Z3 1444 aa16.83■□□□□ 0.29
USP40-214ENST00000483519 NRXN1Q9ULB1 1477 aa16.83■□□□□ 0.29
USP40-214ENST00000483519 MRE11P49959 708 aa16.83■□□□□ 0.28
USP40-214ENST00000483519 RUNDC1Q96C34 613 aa16.83■□□□□ 0.28
USP40-214ENST00000483519 NAP1L5Q96NT1 182 aaPredicted RBP16.83■□□□□ 0.28
USP40-214ENST00000483519 SHPRHQ149N8 1683 aa16.83■□□□□ 0.28
USP40-214ENST00000483519 WDR63Q8IWG1 891 aa16.83■□□□□ 0.28
USP40-214ENST00000483519 IQSEC2Q5JU85 1478 aa16.83■□□□□ 0.28
USP40-214ENST00000483519 FER1L4A9Z1Z3 1794 aa16.82■□□□□ 0.28
USP40-214ENST00000483519 TRAK2O60296 914 aa16.82■□□□□ 0.28
USP40-214ENST00000483519 RLBP1P12271 317 aa16.82■□□□□ 0.28
USP40-214ENST00000483519 C14orf37Q86TY3 774 aa16.82■□□□□ 0.28
USP40-214ENST00000483519 CARD14Q9BXL6 1004 aa16.82■□□□□ 0.28
USP40-214ENST00000483519 ISY1Q9ULR0 285 aaKnown RBP16.82■□□□□ 0.28
USP40-214ENST00000483519 C22orf23Q9BZE7 217 aa16.81■□□□□ 0.28
USP40-214ENST00000483519 GZF1Q9H116 711 aaPredicted RBP16.81■□□□□ 0.28
USP40-214ENST00000483519 DDX11L8A8MPP1 907 aa16.81■□□□□ 0.28
USP40-214ENST00000483519 ADGRB3O60242 1522 aa16.81■□□□□ 0.28
USP40-214ENST00000483519 SETBP1Q9Y6X0 1596 aa16.8■□□□□ 0.28
USP40-214ENST00000483519 KDM4FA0A1W2PPD8 638 aa16.8■□□□□ 0.28
USP40-214ENST00000483519 SPRYD3Q8NCJ5 442 aa16.8■□□□□ 0.28
USP40-214ENST00000483519 PHF23Q9BUL5 403 aaPredicted RBP16.8■□□□□ 0.28
USP40-214ENST00000483519 PANK2Q9BZ23 570 aa16.8■□□□□ 0.28
USP40-214ENST00000483519 NEUROD2Q15784 382 aa16.79■□□□□ 0.28
USP40-214ENST00000483519 PIK3C2BO00750 1634 aa16.79■□□□□ 0.28
USP40-214ENST00000483519 MYO3AQ8NEV4 1616 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 MVPQ14764 893 aaKnown RBP16.78■□□□□ 0.28
USP40-214ENST00000483519 TCP11L2Q8N4U5 519 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 MROH2AA6NES4 1674 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms