RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TESK2Q96S53 571 aa17.15■□□□□ 0.34
SDC1-206ENST00000482879 LRRC7Q96NW7 1537 aa17.15■□□□□ 0.34
SDC1-206ENST00000482879 TMEM94Q12767 1356 aa17.15■□□□□ 0.34
SDC1-206ENST00000482879 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.34
SDC1-206ENST00000482879 LTBP4Q8N2S1 1624 aa17.14■□□□□ 0.33
SDC1-206ENST00000482879 SLC24A1O60721 1099 aa17.13■□□□□ 0.33
SDC1-206ENST00000482879 NCOA3Q9Y6Q9 1424 aa17.13■□□□□ 0.33
SDC1-206ENST00000482879 SBNO2Q9Y2G9 1366 aa17.12■□□□□ 0.33
SDC1-206ENST00000482879 NALCNQ8IZF0 1738 aa17.11■□□□□ 0.33
SDC1-206ENST00000482879 TMF1P82094 1093 aa17.11■□□□□ 0.33
SDC1-206ENST00000482879 C19orf44Q9H6X5 657 aa17.1■□□□□ 0.33
SDC1-206ENST00000482879 EVC2Q86UK5 1308 aa17.1■□□□□ 0.33
SDC1-206ENST00000482879 ADGRL3Q9HAR2 1447 aa17.1■□□□□ 0.33
SDC1-206ENST00000482879 WASLO00401 505 aaPredicted RBP17.09■□□□□ 0.33
SDC1-206ENST00000482879 CDK19Q9BWU1 502 aa17.09■□□□□ 0.33
SDC1-206ENST00000482879 ADGRB2O60241 1585 aa17.08■□□□□ 0.32
SDC1-206ENST00000482879 MSH6P52701 1360 aa17.08■□□□□ 0.32
SDC1-206ENST00000482879 DISP3Q9P2K9 1392 aa17.07■□□□□ 0.32
SDC1-206ENST00000482879 C11orf95C9JLR9 678 aaPredicted RBP17.07■□□□□ 0.32
SDC1-206ENST00000482879 TULP4Q9NRJ4 1543 aa17.06■□□□□ 0.32
SDC1-206ENST00000482879 ATF3P18847 181 aa17.06■□□□□ 0.32
SDC1-206ENST00000482879 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
SDC1-206ENST00000482879 CDCA8Q53HL2 280 aa17.06■□□□□ 0.32
SDC1-206ENST00000482879 CABP2Q9NPB3 220 aa17.06■□□□□ 0.32
SDC1-206ENST00000482879 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
SDC1-206ENST00000482879 POLR3GLQ9BT43 218 aa17.05■□□□□ 0.32
SDC1-206ENST00000482879 CDC42BPGQ6DT37 1551 aa17.05■□□□□ 0.32
SDC1-206ENST00000482879 NUTM2FA1L443 756 aa17.04■□□□□ 0.32
SDC1-206ENST00000482879 FMN2Q9NZ56 1722 aa17.04■□□□□ 0.32
SDC1-206ENST00000482879 RGPD8O14715 1765 aaPredicted RBP17.03■□□□□ 0.32
SDC1-206ENST00000482879 CADPS2Q86UW7 1296 aa17.03■□□□□ 0.32
SDC1-206ENST00000482879 PUS7Q96PZ0 661 aaKnown RBP17.02■□□□□ 0.32
SDC1-206ENST00000482879 DCCP43146 1447 aa17.02■□□□□ 0.31
SDC1-206ENST00000482879 KIF7Q2M1P5 1343 aa17.01■□□□□ 0.31
SDC1-206ENST00000482879 CERKQ8TCT0 537 aa17.01■□□□□ 0.31
SDC1-206ENST00000482879 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
SDC1-206ENST00000482879 CCDC7Q96M83 1385 aa17■□□□□ 0.31
SDC1-206ENST00000482879 WASHC2AQ641Q2 1341 aa16.99■□□□□ 0.31
SDC1-206ENST00000482879 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
SDC1-206ENST00000482879 PRR36Q9H6K5 1346 aa16.98■□□□□ 0.31
SDC1-206ENST00000482879 ANKARQ7Z5J8 1434 aa16.98■□□□□ 0.31
SDC1-206ENST00000482879 TMC1Q8TDI8 760 aa16.98■□□□□ 0.31
SDC1-206ENST00000482879 CCDC61Q9Y6R9 512 aa16.98■□□□□ 0.31
SDC1-206ENST00000482879 USP32Q8NFA0 1604 aa16.98■□□□□ 0.31
SDC1-206ENST00000482879 ATP7BP35670 1465 aa16.97■□□□□ 0.31
SDC1-206ENST00000482879 IQSEC2Q5JU85 1478 aa16.97■□□□□ 0.31
SDC1-206ENST00000482879 MST1RQ04912 1400 aa16.96■□□□□ 0.31
SDC1-206ENST00000482879 ITSN1Q15811 1721 aa16.96■□□□□ 0.31
SDC1-206ENST00000482879 SLAIN2Q9P270 581 aa16.96■□□□□ 0.31
SDC1-206ENST00000482879 C1orf167Q5SNV9 1468 aa16.95■□□□□ 0.3
SDC1-206ENST00000482879 ESCO1Q5FWF5 840 aa16.95■□□□□ 0.3
SDC1-206ENST00000482879 SLC12A5Q9H2X9 1139 aa16.95■□□□□ 0.3
SDC1-206ENST00000482879 CABP1Q9NZU7 370 aa16.95■□□□□ 0.3
SDC1-206ENST00000482879 TOM1O60784 492 aa16.94■□□□□ 0.3
SDC1-206ENST00000482879 ORAI2Q96SN7 254 aa16.94■□□□□ 0.3
SDC1-206ENST00000482879 PPIP5K1Q6PFW1 1433 aa16.94■□□□□ 0.3
SDC1-206ENST00000482879 TOPAZ1Q8N9V7 1692 aa16.94■□□□□ 0.3
SDC1-206ENST00000482879 PMFBP1Q8TBY8 1022 aa16.93■□□□□ 0.3
SDC1-206ENST00000482879 NINLQ9Y2I6 1382 aa16.92■□□□□ 0.3
SDC1-206ENST00000482879 MYOM1P52179 1685 aa16.92■□□□□ 0.3
SDC1-206ENST00000482879 PLEKHG3A1L390 1219 aa16.92■□□□□ 0.3
SDC1-206ENST00000482879 UBAP1LF5GYI3 381 aa16.92■□□□□ 0.3
SDC1-206ENST00000482879 PHF8Q9UPP1 1060 aa16.92■□□□□ 0.3
SDC1-206ENST00000482879 NGDNQ8NEJ9 315 aaKnown RBP16.9■□□□□ 0.3
SDC1-206ENST00000482879 DDX10Q13206 875 aaKnown RBP16.89■□□□□ 0.29
SDC1-206ENST00000482879 HDGFL2Q7Z4V5 671 aaPredicted RBP16.89■□□□□ 0.29
SDC1-206ENST00000482879 TERF2IPQ9NYB0 399 aa16.89■□□□□ 0.29
SDC1-206ENST00000482879 ACEP12821 1306 aa16.89■□□□□ 0.29
SDC1-206ENST00000482879 KIF1AQ12756 1690 aa16.88■□□□□ 0.29
SDC1-206ENST00000482879 BRINP3Q76B58 766 aa16.88■□□□□ 0.29
SDC1-206ENST00000482879 PANK3Q9H999 370 aa16.88■□□□□ 0.29
SDC1-206ENST00000482879 AKAP12Q02952 1782 aa16.87■□□□□ 0.29
SDC1-206ENST00000482879 FOXO3O43524 673 aa16.87■□□□□ 0.29
SDC1-206ENST00000482879 PIP4K2BP78356 416 aa16.87■□□□□ 0.29
SDC1-206ENST00000482879 ZNF692Q9BU19 519 aaPredicted RBP16.87■□□□□ 0.29
SDC1-206ENST00000482879 SCAF1Q9H7N4 1312 aaKnown RBP16.86■□□□□ 0.29
SDC1-206ENST00000482879 POLR3AO14802 1390 aaPredicted RBP16.86■□□□□ 0.29
SDC1-206ENST00000482879 ANKRD36BQ8N2N9 1353 aa16.86■□□□□ 0.29
SDC1-206ENST00000482879 CD163L1Q9NR16 1453 aa16.86■□□□□ 0.29
SDC1-206ENST00000482879 ROBO1Q9Y6N7 1651 aa16.85■□□□□ 0.29
SDC1-206ENST00000482879 PSME1Q06323 249 aa16.85■□□□□ 0.29
SDC1-206ENST00000482879 A0A1W2PP64 1363 aa16.85■□□□□ 0.29
SDC1-206ENST00000482879 CPSF1Q10570 1443 aaKnown RBP16.85■□□□□ 0.29
SDC1-206ENST00000482879 KTN1Q86UP2 1357 aaKnown RBP16.84■□□□□ 0.29
SDC1-206ENST00000482879 NPHP3Q7Z494 1330 aa16.83■□□□□ 0.28
SDC1-206ENST00000482879 DDX17Q92841 729 aaKnown RBP16.83■□□□□ 0.28
SDC1-206ENST00000482879 CARD14Q9BXL6 1004 aa16.83■□□□□ 0.28
SDC1-206ENST00000482879 MON2Q7Z3U7 1717 aa16.82■□□□□ 0.28
SDC1-206ENST00000482879 XPCQ01831 940 aaPredicted RBP16.82■□□□□ 0.28
SDC1-206ENST00000482879 KRT28Q7Z3Y7 464 aa16.82■□□□□ 0.28
SDC1-206ENST00000482879 USP6P35125 1406 aa16.8■□□□□ 0.28
SDC1-206ENST00000482879 KNSTRNQ9Y448 316 aa16.8■□□□□ 0.28
SDC1-206ENST00000482879 NHSL1Q5SYE7 1610 aa16.8■□□□□ 0.28
SDC1-206ENST00000482879 NSD3Q9BZ95 1437 aa16.79■□□□□ 0.28
SDC1-206ENST00000482879 PAK3O75914 559 aaPredicted RBP16.79■□□□□ 0.28
SDC1-206ENST00000482879 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.79■□□□□ 0.28
SDC1-206ENST00000482879 EDC4Q6P2E9 1401 aaKnown RBP16.79■□□□□ 0.28
SDC1-206ENST00000482879 TTC21BQ7Z4L5 1316 aa16.78■□□□□ 0.28
SDC1-206ENST00000482879 PER1O15534 1290 aaPredicted RBP16.78■□□□□ 0.28
SDC1-206ENST00000482879 BRD4O60885 1362 aaPredicted RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms