RNA–Protein interactions for RNA: ENST00000482462.1

PDGFA-206, Transcript of platelet derived growth factor subunit A, humanhuman

TSL 1 (best)

Gene PDGFA, Length 1,770 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFA-206ENST00000482462 PRKRIP1Q9H875 184 aaPredicted RBP25.88■■□□□ 1.73
PDGFA-206ENST00000482462 NPHP4O75161 1426 aaPredicted RBP25.87■■□□□ 1.73
PDGFA-206ENST00000482462 RBM19Q9Y4C8 960 aaKnown RBP25.87■■□□□ 1.73
PDGFA-206ENST00000482462 PIK3R4Q99570 1358 aa25.86■■□□□ 1.73
PDGFA-206ENST00000482462 CDCA8Q53HL2 280 aa25.85■■□□□ 1.73
PDGFA-206ENST00000482462 SIRT1Q96EB6 747 aa25.84■■□□□ 1.73
PDGFA-206ENST00000482462 FAM135BQ49AJ0 1406 aa25.84■■□□□ 1.73
PDGFA-206ENST00000482462 XRN1Q8IZH2 1706 aaKnown RBP25.82■■□□□ 1.72
PDGFA-206ENST00000482462 PTPRUQ92729 1446 aa25.82■■□□□ 1.72
PDGFA-206ENST00000482462 ZBED9Q6R2W3 1325 aa25.82■■□□□ 1.72
PDGFA-206ENST00000482462 PRAM1Q96QH2 718 aa25.82■■□□□ 1.72
PDGFA-206ENST00000482462 POGKQ9P215 609 aa25.82■■□□□ 1.72
PDGFA-206ENST00000482462 CHD2O14647 1828 aaKnown RBP25.82■■□□□ 1.72
PDGFA-206ENST00000482462 POLR3GLQ9BT43 218 aa25.82■■□□□ 1.72
PDGFA-206ENST00000482462 NCKAP5LQ9HCH0 1330 aa25.8■■□□□ 1.72
PDGFA-206ENST00000482462 STRCQ7RTU9 1775 aa25.8■■□□□ 1.72
PDGFA-206ENST00000482462 ILDR1Q86SU0 546 aaPredicted RBP25.78■■□□□ 1.72
PDGFA-206ENST00000482462 PTCH1Q13635 1447 aa25.78■■□□□ 1.72
PDGFA-206ENST00000482462 TULP4Q9NRJ4 1543 aa25.78■■□□□ 1.72
PDGFA-206ENST00000482462 AMOTL2Q9Y2J4 779 aa25.76■■□□□ 1.71
PDGFA-206ENST00000482462 EVC2Q86UK5 1308 aa25.75■■□□□ 1.71
PDGFA-206ENST00000482462 SAFB2Q14151 953 aaKnown RBP eCLIP25.75■■□□□ 1.71
PDGFA-206ENST00000482462 ROBO2Q9HCK4 1378 aa25.75■■□□□ 1.71
PDGFA-206ENST00000482462 PLEKHH1Q9ULM0 1364 aa25.75■■□□□ 1.71
PDGFA-206ENST00000482462 MYOM1P52179 1685 aa25.75■■□□□ 1.71
PDGFA-206ENST00000482462 WAPLQ7Z5K2 1190 aa25.74■■□□□ 1.71
PDGFA-206ENST00000482462 PUS7Q96PZ0 661 aaKnown RBP25.74■■□□□ 1.71
PDGFA-206ENST00000482462 DMRT2Q9Y5R5 561 aa25.72■■□□□ 1.71
PDGFA-206ENST00000482462 PPP4R2Q9NY27 417 aa25.72■■□□□ 1.71
PDGFA-206ENST00000482462 MINK1Q8N4C8 1332 aaPredicted RBP25.71■■□□□ 1.71
PDGFA-206ENST00000482462 FANCIQ9NVI1 1328 aa25.71■■□□□ 1.71
PDGFA-206ENST00000482462 MRS2Q9HD23 443 aa25.71■■□□□ 1.71
PDGFA-206ENST00000482462 ADGRB2O60241 1585 aa25.7■■□□□ 1.7
PDGFA-206ENST00000482462 NWD1Q149M9 1564 aa25.7■■□□□ 1.7
PDGFA-206ENST00000482462 CCDC184Q52MB2 194 aa25.69■■□□□ 1.7
PDGFA-206ENST00000482462 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.69■■□□□ 1.7
PDGFA-206ENST00000482462 KCNA6P17658 529 aa25.66■■□□□ 1.7
PDGFA-206ENST00000482462 ATAD2Q6PL18 1390 aa25.63■■□□□ 1.69
PDGFA-206ENST00000482462 SMG6Q86US8 1419 aaKnown RBP25.62■■□□□ 1.69
PDGFA-206ENST00000482462 SRPK2P78362 688 aaKnown RBP25.61■■□□□ 1.69
PDGFA-206ENST00000482462 CDK19Q9BWU1 502 aa25.61■■□□□ 1.69
PDGFA-206ENST00000482462 CABP2Q9NPB3 220 aa25.61■■□□□ 1.69
PDGFA-206ENST00000482462 NINLQ9Y2I6 1382 aa25.6■■□□□ 1.69
PDGFA-206ENST00000482462 WASLO00401 505 aaPredicted RBP25.6■■□□□ 1.69
PDGFA-206ENST00000482462 NKTRP30414 1462 aaKnown RBP25.59■■□□□ 1.69
PDGFA-206ENST00000482462 FBXO41Q8TF61 875 aa25.59■■□□□ 1.69
PDGFA-206ENST00000482462 PANK3Q9H999 370 aa25.59■■□□□ 1.69
PDGFA-206ENST00000482462 FAM9BQ8IZU0 186 aa25.59■■□□□ 1.69
PDGFA-206ENST00000482462 CERKQ8TCT0 537 aa25.58■■□□□ 1.69
PDGFA-206ENST00000482462 KTN1Q86UP2 1357 aaKnown RBP25.56■■□□□ 1.68
PDGFA-206ENST00000482462 NALCNQ8IZF0 1738 aa25.56■■□□□ 1.68
PDGFA-206ENST00000482462 STRCP1A6NGW2 1772 aa25.56■■□□□ 1.68
PDGFA-206ENST00000482462 PER1O15534 1290 aaPredicted RBP25.55■■□□□ 1.68
PDGFA-206ENST00000482462 TMC1Q8TDI8 760 aa25.54■■□□□ 1.68
PDGFA-206ENST00000482462 SLC12A5Q9H2X9 1139 aa25.52■■□□□ 1.68
PDGFA-206ENST00000482462 IRX6P78412 446 aaPredicted RBP25.51■■□□□ 1.67
PDGFA-206ENST00000482462 RNF123Q5XPI4 1314 aa25.51■■□□□ 1.67
PDGFA-206ENST00000482462 CDC42BPGQ6DT37 1551 aa25.51■■□□□ 1.67
PDGFA-206ENST00000482462 ATP7BP35670 1465 aa25.51■■□□□ 1.67
PDGFA-206ENST00000482462 ANKRD36BQ8N2N9 1353 aa25.5■■□□□ 1.67
PDGFA-206ENST00000482462 ADGRL3Q9HAR2 1447 aa25.5■■□□□ 1.67
PDGFA-206ENST00000482462 TOPAZ1Q8N9V7 1692 aa25.5■■□□□ 1.67
PDGFA-206ENST00000482462 FMN2Q9NZ56 1722 aa25.5■■□□□ 1.67
PDGFA-206ENST00000482462 ITSN1Q15811 1721 aa25.5■■□□□ 1.67
PDGFA-206ENST00000482462 NUDT16Q96DE0 195 aaKnown RBP25.47■■□□□ 1.67
PDGFA-206ENST00000482462 KNSTRNQ9Y448 316 aa25.47■■□□□ 1.67
PDGFA-206ENST00000482462 LTBP4Q8N2S1 1624 aa25.47■■□□□ 1.67
PDGFA-206ENST00000482462 USP32Q8NFA0 1604 aa25.47■■□□□ 1.67
PDGFA-206ENST00000482462 PROSER2Q86WR7 435 aaPredicted RBP25.46■■□□□ 1.67
PDGFA-206ENST00000482462 CCDC61Q9Y6R9 512 aa25.46■■□□□ 1.67
PDGFA-206ENST00000482462 PPIP5K1Q6PFW1 1433 aa25.45■■□□□ 1.66
PDGFA-206ENST00000482462 NUDCQ9Y266 331 aa25.45■■□□□ 1.66
PDGFA-206ENST00000482462 CD163L1Q9NR16 1453 aa25.45■■□□□ 1.66
PDGFA-206ENST00000482462 NCOA3Q9Y6Q9 1424 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 PRR36Q9H6K5 1346 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 RGPD8O14715 1765 aaPredicted RBP25.44■■□□□ 1.66
PDGFA-206ENST00000482462 ANKARQ7Z5J8 1434 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 NPC1L1Q9UHC9 1359 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 MSH5O43196 834 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 CARD14Q9BXL6 1004 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 TERF2IPQ9NYB0 399 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 CABP1Q9NZU7 370 aa25.44■■□□□ 1.66
PDGFA-206ENST00000482462 A0A1W2PP64 1363 aa25.43■■□□□ 1.66
PDGFA-206ENST00000482462 ZNF335Q9H4Z2 1342 aaPredicted RBP25.43■■□□□ 1.66
PDGFA-206ENST00000482462 AKAP12Q02952 1782 aa25.43■■□□□ 1.66
PDGFA-206ENST00000482462 NSD3Q9BZ95 1437 aa25.42■■□□□ 1.66
PDGFA-206ENST00000482462 AMER1Q5JTC6 1135 aaPredicted RBP25.41■■□□□ 1.66
PDGFA-206ENST00000482462 HDGFL2Q7Z4V5 671 aaPredicted RBP25.41■■□□□ 1.66
PDGFA-206ENST00000482462 BRD4O60885 1362 aaPredicted RBP25.4■■□□□ 1.66
PDGFA-206ENST00000482462 RBM33Q96EV2 1170 aaKnown RBP25.4■■□□□ 1.66
PDGFA-206ENST00000482462 RALBP1Q15311 655 aa25.39■■□□□ 1.66
PDGFA-206ENST00000482462 MON2Q7Z3U7 1717 aa25.39■■□□□ 1.65
PDGFA-206ENST00000482462 XIRP1Q702N8 1843 aaKnown RBP25.39■■□□□ 1.65
PDGFA-206ENST00000482462 C14orf37Q86TY3 774 aa25.39■■□□□ 1.65
PDGFA-206ENST00000482462 PNISRQ8TF01 805 aaKnown RBP25.39■■□□□ 1.65
PDGFA-206ENST00000482462 PARD3Q8TEW0 1356 aa25.38■■□□□ 1.65
PDGFA-206ENST00000482462 CPSF1Q10570 1443 aaKnown RBP25.38■■□□□ 1.65
PDGFA-206ENST00000482462 TMEM94Q12767 1356 aa25.38■■□□□ 1.65
PDGFA-206ENST00000482462 PLEKHG3A1L390 1219 aa25.36■■□□□ 1.65
PDGFA-206ENST00000482462 NUTM2FA1L443 756 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms