RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 BAG6P46379 1132 aa11.8□□□□□ -0.52
USP54-213ENST00000481991 LMOD2Q6P5Q4 547 aa11.8□□□□□ -0.52
USP54-213ENST00000481991 KRT27Q7Z3Y8 459 aa11.8□□□□□ -0.52
USP54-213ENST00000481991 NPHP3Q7Z494 1330 aa11.8□□□□□ -0.52
USP54-213ENST00000481991 BCL9LQ86UU0 1499 aa11.79□□□□□ -0.52
USP54-213ENST00000481991 YY1P25490 414 aa11.79□□□□□ -0.52
USP54-213ENST00000481991 R3HDM1Q15032 1099 aaKnown RBP11.79□□□□□ -0.52
USP54-213ENST00000481991 EN1Q05925 392 aaPredicted RBP11.78□□□□□ -0.52
USP54-213ENST00000481991 UNC13BO14795 1591 aa11.77□□□□□ -0.53
USP54-213ENST00000481991 STK26Q9P289 416 aa11.77□□□□□ -0.53
USP54-213ENST00000481991 VGFO15240 615 aaPredicted RBP11.76□□□□□ -0.53
USP54-213ENST00000481991 CABLES1Q8TDN4 633 aa11.76□□□□□ -0.53
USP54-213ENST00000481991 DCAF8L1A6NGE4 600 aa11.75□□□□□ -0.53
USP54-213ENST00000481991 FAM182BQ5T319 152 aa11.75□□□□□ -0.53
USP54-213ENST00000481991 KRT28Q7Z3Y7 464 aa11.75□□□□□ -0.53
USP54-213ENST00000481991 LRPPRCP42704 1394 aaKnown RBP11.75□□□□□ -0.53
USP54-213ENST00000481991 ROBO2Q9HCK4 1378 aa11.75□□□□□ -0.53
USP54-213ENST00000481991 RALGAPBQ86X10 1494 aa11.75□□□□□ -0.53
USP54-213ENST00000481991 ADGRL2O95490 1459 aa11.74□□□□□ -0.53
USP54-213ENST00000481991 E9PCH4 1651 aa11.73□□□□□ -0.53
USP54-213ENST00000481991 VPS72Q15906 364 aa11.73□□□□□ -0.53
USP54-213ENST00000481991 FAM98CQ17RN3 349 aaKnown RBP11.73□□□□□ -0.53
USP54-213ENST00000481991 WAPLQ7Z5K2 1190 aa11.73□□□□□ -0.53
USP54-213ENST00000481991 XRN1Q8IZH2 1706 aaKnown RBP11.72□□□□□ -0.53
USP54-213ENST00000481991 PSME1Q06323 249 aa11.71□□□□□ -0.53
USP54-213ENST00000481991 PPP1R1BQ9UD71 204 aaPredicted RBP11.71□□□□□ -0.53
USP54-213ENST00000481991 NALCNQ8IZF0 1738 aa11.71□□□□□ -0.54
USP54-213ENST00000481991 MYOM2P54296 1465 aa11.7□□□□□ -0.54
USP54-213ENST00000481991 SPATA31A3Q5VYP0 1347 aa11.7□□□□□ -0.54
USP54-213ENST00000481991 EZH2Q15910 746 aaKnown RBP11.7□□□□□ -0.54
USP54-213ENST00000481991 NRXN3Q9Y4C0 1643 aa11.7□□□□□ -0.54
USP54-213ENST00000481991 EP400Q96L91 3159 aa11.7□□□□□ -0.54
USP54-213ENST00000481991 FAM83GA6ND36 823 aa11.69□□□□□ -0.54
USP54-213ENST00000481991 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
USP54-213ENST00000481991 PPARGC1BQ86YN6 1023 aaKnown RBP11.67□□□□□ -0.54
USP54-213ENST00000481991 BTG4Q9NY30 223 aa11.67□□□□□ -0.54
USP54-213ENST00000481991 HFM1A2PYH4 1435 aa11.67□□□□□ -0.54
USP54-213ENST00000481991 GLI3P10071 1580 aa11.67□□□□□ -0.54
USP54-213ENST00000481991 BRWD3Q6RI45 1802 aa11.66□□□□□ -0.54
USP54-213ENST00000481991 TRIM37O94972 964 aa11.66□□□□□ -0.54
USP54-213ENST00000481991 APBA3O96018 575 aa11.66□□□□□ -0.54
USP54-213ENST00000481991 RGL3Q3MIN7 710 aa11.66□□□□□ -0.54
USP54-213ENST00000481991 LRP5O75197 1615 aa11.66□□□□□ -0.54
USP54-213ENST00000481991 SLIT2O94813 1529 aa11.65□□□□□ -0.54
USP54-213ENST00000481991 PXDNQ92626 1479 aa11.65□□□□□ -0.54
USP54-213ENST00000481991 COL22A1Q8NFW1 1626 aaPredicted RBP11.65□□□□□ -0.54
USP54-213ENST00000481991 NBPF8Q3BBV2 869 aa11.65□□□□□ -0.54
USP54-213ENST00000481991 NBPF14Q5TI25 921 aa11.65□□□□□ -0.54
USP54-213ENST00000481991 TMEM132EQ6IEE7 984 aa11.65□□□□□ -0.54
USP54-213ENST00000481991 PMFBP1Q8TBY8 1022 aa11.64□□□□□ -0.55
USP54-213ENST00000481991 PHF8Q9UPP1 1060 aa11.64□□□□□ -0.55
USP54-213ENST00000481991 RPGRIP1LQ68CZ1 1315 aa11.63□□□□□ -0.55
USP54-213ENST00000481991 NAIPQ13075 1403 aa11.63□□□□□ -0.55
USP54-213ENST00000481991 SAFB2Q14151 953 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP54-213ENST00000481991 ROCK1Q13464 1354 aa11.63□□□□□ -0.55
USP54-213ENST00000481991 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
USP54-213ENST00000481991 LAMC1P11047 1609 aa11.62□□□□□ -0.55
USP54-213ENST00000481991 MARF1Q9Y4F3 1742 aaKnown RBP11.62□□□□□ -0.55
USP54-213ENST00000481991 NEXMIFQ5QGS0 1516 aa11.61□□□□□ -0.55
USP54-213ENST00000481991 USP35Q9P2H5 1018 aa11.61□□□□□ -0.55
USP54-213ENST00000481991 SENP3-EIF4A1A0A087X0R7 540 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 PAK3O75914 559 aaPredicted RBP11.6□□□□□ -0.55
USP54-213ENST00000481991 FAM196AQ6ZSG2 479 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 CAMKK2Q96RR4 588 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 SPON1Q9HCB6 807 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 STRN4Q9NRL3 753 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 CCDC144AA2RUR9 1427 aa11.6□□□□□ -0.55
USP54-213ENST00000481991 EVA1CP58658 441 aa11.59□□□□□ -0.55
USP54-213ENST00000481991 PDE3BQ13370 1112 aa11.59□□□□□ -0.55
USP54-213ENST00000481991 SLC4A1APQ9BWU0 796 aaKnown RBP11.59□□□□□ -0.55
USP54-213ENST00000481991 SPHKAPQ2M3C7 1700 aa11.59□□□□□ -0.55
USP54-213ENST00000481991 ADGRF5Q8IZF2 1346 aa11.59□□□□□ -0.55
USP54-213ENST00000481991 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.58□□□□□ -0.56
USP54-213ENST00000481991 PLEKHH1Q9ULM0 1364 aa11.58□□□□□ -0.56
USP54-213ENST00000481991 CLTCL1P53675 1640 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 KCNQ2O43526 872 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 PRDM11Q9NQV5 511 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 POGKQ9P215 609 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 SPATA31A5Q5VU36 1347 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 SPATA31A7Q8IWB4 1347 aa11.57□□□□□ -0.56
USP54-213ENST00000481991 ARHGEF10O15013 1369 aa11.56□□□□□ -0.56
USP54-213ENST00000481991 KIF1BO60333 1816 aa11.56□□□□□ -0.56
USP54-213ENST00000481991 TNS3Q68CZ2 1445 aa11.56□□□□□ -0.56
USP54-213ENST00000481991 USP32Q8NFA0 1604 aa11.56□□□□□ -0.56
USP54-213ENST00000481991 CHRNA2Q15822 529 aa11.55□□□□□ -0.56
USP54-213ENST00000481991 CDC42BPGQ6DT37 1551 aa11.54□□□□□ -0.56
USP54-213ENST00000481991 SBNO1A3KN83 1393 aa11.54□□□□□ -0.56
USP54-213ENST00000481991 ZC3H6P61129 1189 aaKnown RBP11.53□□□□□ -0.56
USP54-213ENST00000481991 ZNF784Q8NCA9 323 aaPredicted RBP11.53□□□□□ -0.56
USP54-213ENST00000481991 NGDNQ8NEJ9 315 aaKnown RBP11.53□□□□□ -0.56
USP54-213ENST00000481991 PRAM1Q96QH2 718 aa11.53□□□□□ -0.56
USP54-213ENST00000481991 GPRASP1Q5JY77 1395 aa11.53□□□□□ -0.56
USP54-213ENST00000481991 ABCC11Q96J66 1382 aa11.53□□□□□ -0.56
USP54-213ENST00000481991 NUTM2GQ5VZR2 741 aa11.52□□□□□ -0.57
USP54-213ENST00000481991 HIRIP3Q9BW71 556 aaPredicted RBP11.52□□□□□ -0.57
USP54-213ENST00000481991 IFFO2Q5TF58 517 aa11.51□□□□□ -0.57
USP54-213ENST00000481991 PLCH1Q4KWH8 1693 aa11.51□□□□□ -0.57
USP54-213ENST00000481991 RGPD1P0DJD0 1748 aa11.5□□□□□ -0.57
USP54-213ENST00000481991 ATF5Q9Y2D1 282 aaPredicted RBP11.5□□□□□ -0.57
USP54-213ENST00000481991 SPATA31A1Q5TZJ5 1347 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms