RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 C8orf37Q96NL8 207 aa15.18■□□□□ 0.02
GPNMB-211ENST00000479625 AMOTL2Q9Y2J4 779 aa15.18■□□□□ 0.02
GPNMB-211ENST00000479625 PNPLA6Q8IY17 1366 aa15.18■□□□□ 0.02
GPNMB-211ENST00000479625 LAMC1P11047 1609 aa15.17■□□□□ 0.02
GPNMB-211ENST00000479625 MARF1Q9Y4F3 1742 aaKnown RBP15.15■□□□□ 0.02
GPNMB-211ENST00000479625 ADGRL3Q9HAR2 1447 aa15.15■□□□□ 0.02
GPNMB-211ENST00000479625 RBM6P78332 1123 aaKnown RBP15.14■□□□□ 0.01
GPNMB-211ENST00000479625 FAM50AQ14320 339 aaKnown RBP15.14■□□□□ 0.01
GPNMB-211ENST00000479625 QTRT2Q9H974 415 aaKnown RBP15.14■□□□□ 0.01
GPNMB-211ENST00000479625 COL22A1Q8NFW1 1626 aaPredicted RBP15.13■□□□□ 0.01
GPNMB-211ENST00000479625 METP08581 1390 aa15.11■□□□□ 0.01
GPNMB-211ENST00000479625 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
GPNMB-211ENST00000479625 CLTCL1P53675 1640 aa15.11■□□□□ 0.01
GPNMB-211ENST00000479625 ADAMTS2O95450 1211 aa15.11■□□□□ 0.01
GPNMB-211ENST00000479625 LRRC59Q96AG4 307 aaKnown RBP15.11■□□□□ 0.01
GPNMB-211ENST00000479625 NEXMIFQ5QGS0 1516 aa15.11■□□□□ 0.01
GPNMB-211ENST00000479625 KIF1BO60333 1816 aa15.09■□□□□ 0.01
GPNMB-211ENST00000479625 C1orf167Q5SNV9 1468 aa15.08■□□□□ 0.01
GPNMB-211ENST00000479625 NGLY1Q96IV0 654 aa15.08■□□□□ 0
GPNMB-211ENST00000479625 ATRNO75882 1429 aa15.06■□□□□ 0
GPNMB-211ENST00000479625 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.06■□□□□ 0
GPNMB-211ENST00000479625 BRWD3Q6RI45 1802 aa15.06■□□□□ 0
GPNMB-211ENST00000479625 USP21Q9UK80 565 aa15.05■□□□□ -0
GPNMB-211ENST00000479625 PTCH1Q13635 1447 aa15.04■□□□□ -0
GPNMB-211ENST00000479625 NUP155O75694 1391 aa15.04■□□□□ -0
GPNMB-211ENST00000479625 ZNF326Q5BKZ1 582 aaKnown RBP15.03■□□□□ -0
GPNMB-211ENST00000479625 ROCK1Q13464 1354 aa15.02■□□□□ -0
GPNMB-211ENST00000479625 ZRANB1Q9UGI0 708 aa15.02■□□□□ -0
GPNMB-211ENST00000479625 MYOM2P54296 1465 aa15.01□□□□□ -0.01
GPNMB-211ENST00000479625 SOS2Q07890 1332 aaPredicted RBP15.01□□□□□ -0.01
GPNMB-211ENST00000479625 POTEHQ6S545 545 aa15.01□□□□□ -0.01
GPNMB-211ENST00000479625 ORAI2Q96SN7 254 aa15.01□□□□□ -0.01
GPNMB-211ENST00000479625 TRPC5Q9UL62 973 aaPredicted RBP15.01□□□□□ -0.01
GPNMB-211ENST00000479625 GLI3P10071 1580 aa15.01□□□□□ -0.01
GPNMB-211ENST00000479625 PPLO60437 1756 aa15□□□□□ -0.01
GPNMB-211ENST00000479625 BCL9LQ86UU0 1499 aa15□□□□□ -0.01
GPNMB-211ENST00000479625 ROBO2Q9HCK4 1378 aa14.99□□□□□ -0.01
GPNMB-211ENST00000479625 CDC42BPGQ6DT37 1551 aa14.99□□□□□ -0.01
GPNMB-211ENST00000479625 FNBP4Q8N3X1 1017 aaPredicted RBP14.99□□□□□ -0.01
GPNMB-211ENST00000479625 PXDNQ92626 1479 aa14.99□□□□□ -0.01
GPNMB-211ENST00000479625 LRP5O75197 1615 aa14.99□□□□□ -0.01
GPNMB-211ENST00000479625 PLCH1Q4KWH8 1693 aa14.96□□□□□ -0.01
GPNMB-211ENST00000479625 ABCA3Q99758 1704 aa14.95□□□□□ -0.02
GPNMB-211ENST00000479625 PRAG1Q86YV5 1406 aa14.95□□□□□ -0.02
GPNMB-211ENST00000479625 AKT1S1Q96B36 256 aa14.95□□□□□ -0.02
GPNMB-211ENST00000479625 USP32Q8NFA0 1604 aa14.95□□□□□ -0.02
GPNMB-211ENST00000479625 ITGAEP38570 1179 aa14.94□□□□□ -0.02
GPNMB-211ENST00000479625 RALGAPBQ86X10 1494 aa14.93□□□□□ -0.02
GPNMB-211ENST00000479625 FMN2Q9NZ56 1722 aa14.92□□□□□ -0.02
GPNMB-211ENST00000479625 XPCQ01831 940 aaPredicted RBP14.92□□□□□ -0.02
GPNMB-211ENST00000479625 MKRN4PQ13434 485 aaPredicted RBP14.92□□□□□ -0.02
GPNMB-211ENST00000479625 RGPD8O14715 1765 aaPredicted RBP14.92□□□□□ -0.02
GPNMB-211ENST00000479625 BLMP54132 1417 aaPredicted RBP14.92□□□□□ -0.02
GPNMB-211ENST00000479625 KIF1AQ12756 1690 aa14.91□□□□□ -0.02
GPNMB-211ENST00000479625 KNDC1Q76NI1 1749 aa14.91□□□□□ -0.02
GPNMB-211ENST00000479625 IFT172Q9UG01 1749 aa14.91□□□□□ -0.02
GPNMB-211ENST00000479625 HFM1A2PYH4 1435 aa14.91□□□□□ -0.02
GPNMB-211ENST00000479625 CCDC125Q86Z20 511 aa14.9□□□□□ -0.02
GPNMB-211ENST00000479625 GJD4Q96KN9 370 aaPredicted RBP14.9□□□□□ -0.02
GPNMB-211ENST00000479625 SLIT2O94813 1529 aa14.9□□□□□ -0.02
GPNMB-211ENST00000479625 NPHP3Q7Z494 1330 aa14.9□□□□□ -0.02
GPNMB-211ENST00000479625 NWD2Q9ULI1 1742 aa14.89□□□□□ -0.03
GPNMB-211ENST00000479625 DEFB132Q7Z7B7 95 aa14.89□□□□□ -0.03
GPNMB-211ENST00000479625 ESCO1Q5FWF5 840 aa14.88□□□□□ -0.03
GPNMB-211ENST00000479625 NAIPQ13075 1403 aa14.87□□□□□ -0.03
GPNMB-211ENST00000479625 CHRDL2Q6WN34 429 aa14.87□□□□□ -0.03
GPNMB-211ENST00000479625 NRAPQ86VF7 1730 aa14.86□□□□□ -0.03
GPNMB-211ENST00000479625 NUTM2FA1L443 756 aa14.85□□□□□ -0.03
GPNMB-211ENST00000479625 FOXO3O43524 673 aa14.85□□□□□ -0.03
GPNMB-211ENST00000479625 RGPD1P0DJD0 1748 aa14.84□□□□□ -0.03
GPNMB-211ENST00000479625 UNC5CLQ8IV45 518 aa14.83□□□□□ -0.04
GPNMB-211ENST00000479625 TNS1Q9HBL0 1735 aaKnown RBP14.83□□□□□ -0.04
GPNMB-211ENST00000479625 VGFO15240 615 aaPredicted RBP14.82□□□□□ -0.04
GPNMB-211ENST00000479625 REM2Q8IYK8 340 aaPredicted RBP14.82□□□□□ -0.04
GPNMB-211ENST00000479625 PSDA5PKW4 1024 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-211ENST00000479625 SPDYE2BA6NHP3 402 aa14.81□□□□□ -0.04
GPNMB-211ENST00000479625 SPDYE6P0CI01 402 aa14.81□□□□□ -0.04
GPNMB-211ENST00000479625 SPDYE2Q495Y8 402 aa14.81□□□□□ -0.04
GPNMB-211ENST00000479625 PLEKHH1Q9ULM0 1364 aa14.81□□□□□ -0.04
GPNMB-211ENST00000479625 SPATA31A3Q5VYP0 1347 aa14.8□□□□□ -0.04
GPNMB-211ENST00000479625 LRPPRCP42704 1394 aaKnown RBP14.8□□□□□ -0.04
GPNMB-211ENST00000479625 CCDC144AA2RUR9 1427 aa14.8□□□□□ -0.04
GPNMB-211ENST00000479625 TECPR2O15040 1411 aa14.8□□□□□ -0.04
GPNMB-211ENST00000479625 TNS3Q68CZ2 1445 aa14.79□□□□□ -0.04
GPNMB-211ENST00000479625 SEPT12Q8IYM1 358 aa14.79□□□□□ -0.04
GPNMB-211ENST00000479625 RRBP1Q9P2E9 1410 aaKnown RBP14.78□□□□□ -0.04
GPNMB-211ENST00000479625 PLEKHG5O94827 1062 aa14.78□□□□□ -0.04
GPNMB-211ENST00000479625 SF3B2Q13435 895 aaKnown RBP14.78□□□□□ -0.04
GPNMB-211ENST00000479625 WAPLQ7Z5K2 1190 aa14.78□□□□□ -0.04
GPNMB-211ENST00000479625 PPARGC1BQ86YN6 1023 aaKnown RBP14.78□□□□□ -0.04
GPNMB-211ENST00000479625 CABLES1Q8TDN4 633 aa14.77□□□□□ -0.05
GPNMB-211ENST00000479625 STK26Q9P289 416 aa14.77□□□□□ -0.05
GPNMB-211ENST00000479625 TRPM3Q9HCF6 1732 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-211ENST00000479625 CRYBG1Q9Y4K1 1723 aa14.77□□□□□ -0.05
GPNMB-211ENST00000479625 RPGRIP1LQ68CZ1 1315 aa14.76□□□□□ -0.05
GPNMB-211ENST00000479625 CCDC9Q9Y3X0 531 aaKnown RBP14.76□□□□□ -0.05
GPNMB-211ENST00000479625 ADGRF5Q8IZF2 1346 aa14.75□□□□□ -0.05
GPNMB-211ENST00000479625 VPS72Q15906 364 aa14.75□□□□□ -0.05
GPNMB-211ENST00000479625 ALS2Q96Q42 1657 aa14.74□□□□□ -0.05
GPNMB-211ENST00000479625 THSD7AQ9UPZ6 1657 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms