RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 DCAF8L1A6NGE4 600 aa10.67□□□□□ -0.7
SYNE1-224ENST00000478916 NLRP2Q9NX02 1062 aa10.67□□□□□ -0.7
SYNE1-224ENST00000478916 TRIM29Q14134 588 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 CASKIN1Q8WXD9 1431 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 PLEKHH2Q8IVE3 1493 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 RIPK4P57078 832 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 RBM33Q96EV2 1170 aaKnown RBP10.66□□□□□ -0.7
SYNE1-224ENST00000478916 BICD2Q8TD16 824 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 FBXW7Q969H0 707 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 HSP90AB3PQ58FF7 597 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 ANKRD45Q5TZF3 282 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 CPLX2Q6PUV4 134 aaKnown RBP10.66□□□□□ -0.7
SYNE1-224ENST00000478916 IFIT2P09913 472 aaKnown RBP10.66□□□□□ -0.7
SYNE1-224ENST00000478916 MRE11P49959 708 aa10.66□□□□□ -0.7
SYNE1-224ENST00000478916 WWC1Q8IX03 1113 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 PLCD4Q9BRC7 762 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 DDX19BQ9UMR2 479 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 NAP1L1P55209 391 aaKnown RBP10.65□□□□□ -0.7
SYNE1-224ENST00000478916 NUCB2P80303 420 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 MYO6Q9UM54 1294 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 CCDC173Q0VFZ6 552 aa10.65□□□□□ -0.7
SYNE1-224ENST00000478916 SMG6Q86US8 1419 aaKnown RBP10.65□□□□□ -0.71
SYNE1-224ENST00000478916 GNAI1P63096 354 aa10.65□□□□□ -0.71
SYNE1-224ENST00000478916 KLHL34Q8N239 644 aa10.65□□□□□ -0.71
SYNE1-224ENST00000478916 RAD21O60216 631 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 REC8O95072 547 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 G3BP1Q13283 466 aaKnown RBP eCLIP10.64□□□□□ -0.71
SYNE1-224ENST00000478916 TSPYL4Q9UJ04 414 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 NASPP49321 788 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-224ENST00000478916 FKBP5Q13451 457 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-224ENST00000478916 BCL2L13Q9BXK5 485 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 TSPYL1Q9H0U9 437 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 POGZQ7Z3K3 1410 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 RUNDC1Q96C34 613 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 NCOA2Q15596 1464 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 TXNDC2Q86VQ3 553 aa10.64□□□□□ -0.71
SYNE1-224ENST00000478916 PROSER2Q86WR7 435 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-224ENST00000478916 THEMISQ8N1K5 641 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-224ENST00000478916 HSP90AB4PQ58FF6 505 aa10.63□□□□□ -0.71
SYNE1-224ENST00000478916 KIF21BO75037 1637 aa10.63□□□□□ -0.71
SYNE1-224ENST00000478916 ZKSCAN1P17029 563 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-224ENST00000478916 NLRP6P59044 892 aa10.63□□□□□ -0.71
SYNE1-224ENST00000478916 CWC22Q9HCG8 908 aaKnown RBP10.63□□□□□ -0.71
SYNE1-224ENST00000478916 ZNF644Q9H582 1327 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-224ENST00000478916 ZRSR2Q15696 482 aaKnown RBP10.63□□□□□ -0.71
SYNE1-224ENST00000478916 CAGE1Q8TC20 777 aa10.63□□□□□ -0.71
SYNE1-224ENST00000478916 LRRC9Q6ZRR7 1453 aa10.63□□□□□ -0.71
SYNE1-224ENST00000478916 HMGN5P82970 282 aaKnown RBP10.62□□□□□ -0.71
SYNE1-224ENST00000478916 NECTIN2Q92692 538 aa10.62□□□□□ -0.71
SYNE1-224ENST00000478916 NAT10Q9H0A0 1025 aaKnown RBP10.62□□□□□ -0.71
SYNE1-224ENST00000478916 PRKRIP1Q9H875 184 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-224ENST00000478916 ESCO1Q5FWF5 840 aa10.62□□□□□ -0.71
SYNE1-224ENST00000478916 TRDNQ13061 729 aa10.62□□□□□ -0.71
SYNE1-224ENST00000478916 APAF1O14727 1248 aa10.62□□□□□ -0.71
SYNE1-224ENST00000478916 CCP110O43303 1012 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 RIC3Q7Z5B4 369 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 RNF20Q5VTR2 975 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 DHX16O60231 1041 aaKnown RBP10.61□□□□□ -0.71
SYNE1-224ENST00000478916 ODF2Q5BJF6 829 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 ABTB2Q8N961 1025 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 CABP2Q9NPB3 220 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 ERICH2A1L162 156 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 KIAA0754O94854 1291 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 USP8P40818 1118 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 EFCAB5A4FU69 1503 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 CT47A1Q5JQC4 288 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-224ENST00000478916 AFAP1Q8N556 730 aa10.61□□□□□ -0.71
SYNE1-224ENST00000478916 CFTRP13569 1480 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 CC2D2AQ9P2K1 1620 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 LETM1O95202 739 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-224ENST00000478916 TAF3Q5VWG9 929 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 NUTM2GQ5VZR2 741 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 RRP1P56182 461 aaKnown RBP10.6□□□□□ -0.71
SYNE1-224ENST00000478916 DZIP1LQ8IYY4 767 aaKnown RBP10.6□□□□□ -0.71
SYNE1-224ENST00000478916 ZBED9Q6R2W3 1325 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 CCDC73Q6ZRK6 1079 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 STK11IPQ8N1F8 1099 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 ERICH3Q5RHP9 1530 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 GOLGA6L7A0A1B0GV03 622 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 SF3B2Q13435 895 aaKnown RBP10.6□□□□□ -0.71
SYNE1-224ENST00000478916 ANO2Q9NQ90 1003 aa10.6□□□□□ -0.71
SYNE1-224ENST00000478916 ERC2O15083 957 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 HSP90AB2PQ58FF8 381 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 OLFM4Q6UX06 510 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 CPLX1O14810 134 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 NFKBIBQ15653 356 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 GAS2L2Q8NHY3 880 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 AXDND1Q5T1B0 1012 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-224ENST00000478916 BCL11BQ9C0K0 894 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-224ENST00000478916 SMC3Q9UQE7 1217 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 HMOX1P09601 288 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 PLEKHO1Q53GL0 409 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-224ENST00000478916 CRBNQ96SW2 442 aa10.59□□□□□ -0.71
SYNE1-224ENST00000478916 EHBP1L1Q8N3D4 1523 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 KIF6Q6ZMV9 814 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 GGNBP2Q9H3C7 697 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 HECW1Q76N89 1606 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 DEF6Q9H4E7 631 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 INCENPQ9NQS7 918 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms