RNA–Protein interactions for RNA: ENST00000476664.1

LRCH3-215, Transcript of leucine rich repeats and calponin homology domain containing 3, human

TSL 3

Gene LRCH3, Length 227 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRCH3-215	ENST00000476664	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.26	□□□□□ -0.77
LRCH3-215	ENST00000476664	GRIN2A	Q12879	1464 aa		10.25	□□□□□ -0.77
LRCH3-215	ENST00000476664	GJA5	P36382	358 aa		10.25	□□□□□ -0.77
LRCH3-215	ENST00000476664	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.25	□□□□□ -0.77
LRCH3-215	ENST00000476664	NUP160	Q12769	1436 aa		10.24	□□□□□ -0.77
LRCH3-215	ENST00000476664	TRPC6	Q9Y210	931 aa		10.24	□□□□□ -0.77
LRCH3-215	ENST00000476664	BOLA1	Q9Y3E2	137 aa		10.24	□□□□□ -0.77
LRCH3-215	ENST00000476664	PRG4	Q92954	1404 aa	Predicted RBP	10.24	□□□□□ -0.77
LRCH3-215	ENST00000476664	PTPRM	P28827	1452 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	TTLL13P	A6NNM8	815 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	LILRB3	O75022	631 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	CSPP1	Q1MSJ5	1256 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	FAM161A	Q3B820	660 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	ADGRG1	Q9Y653	693 aa		10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	TOP2A	P11388	1531 aa	Known RBP	10.23	□□□□□ -0.77
LRCH3-215	ENST00000476664	SOX11	P35716	441 aa		10.22	□□□□□ -0.77
LRCH3-215	ENST00000476664	NUTM1	Q86Y26	1132 aa		10.22	□□□□□ -0.77
LRCH3-215	ENST00000476664	ALG2	Q9H553	416 aa		10.22	□□□□□ -0.77
LRCH3-215	ENST00000476664	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.22	□□□□□ -0.77
LRCH3-215	ENST00000476664	SIRT1	Q96EB6	747 aa		10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	RBM33	Q96EV2	1170 aa	Known RBP	10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	MS4A3	Q96HJ5	214 aa		10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	GJD4	Q96KN9	370 aa	Predicted RBP	10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	TFIP11	Q9UBB9	837 aa	Known RBP	10.21	□□□□□ -0.77
LRCH3-215	ENST00000476664	FGD5	Q6ZNL6	1462 aa		10.21	□□□□□ -0.78
LRCH3-215	ENST00000476664	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	NUTM2E	B1AL46	878 aa	Predicted RBP	10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	KIF21B	O75037	1637 aa		10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	HSPA2	P54652	639 aa		10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	TXNDC2	Q86VQ3	553 aa		10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.2	□□□□□ -0.78
LRCH3-215	ENST00000476664	FXR2	P51116	673 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
LRCH3-215	ENST00000476664	VAC14	Q08AM6	782 aa		10.19	□□□□□ -0.78
LRCH3-215	ENST00000476664	QPCT	Q16769	361 aa		10.19	□□□□□ -0.78
LRCH3-215	ENST00000476664	SLAIN1	Q8ND83	568 aa		10.19	□□□□□ -0.78
LRCH3-215	ENST00000476664	GLI2	P10070	1586 aa		10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	TSR1	Q2NL82	804 aa	Known RBP	10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	PRPF38B	Q5VTL8	546 aa	Known RBP	10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	TYW1B	Q6NUM6	668 aa		10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	PADI6	Q6TGC4	694 aa		10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	RBM46	Q8TBY0	533 aa	Known RBP	10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	DRC1	Q96MC2	740 aa		10.18	□□□□□ -0.78
LRCH3-215	ENST00000476664	TCF3	P15923	654 aa		10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	CD44	P16070	742 aa	Known RBP	10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	CDCA8	Q53HL2	280 aa		10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	RTL5	Q5HYW3	569 aa	Predicted RBP	10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	PDCD7	Q8N8D1	485 aa	Known RBP	10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	RBM27	Q9P2N5	1060 aa	Known RBP	10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	TRIM35	Q9UPQ4	493 aa		10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	ADAMTSL3	P82987	1691 aa		10.17	□□□□□ -0.78
LRCH3-215	ENST00000476664	CD46	P15529	392 aa		10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	ZNF16	P17020	682 aa	Predicted RBP	10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	SULF1	Q8IWU6	871 aa		10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	PTCD2	Q8WV60	388 aa	Known RBP	10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	C8orf37	Q96NL8	207 aa		10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	BCL2L13	Q9BXK5	485 aa		10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	CHMP4A	Q9BY43	222 aa		10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.16	□□□□□ -0.78
LRCH3-215	ENST00000476664	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.15	□□□□□ -0.78
LRCH3-215	ENST00000476664	MOXD2P	A6NHM9	499 aa		10.15	□□□□□ -0.78
LRCH3-215	ENST00000476664	ELOA	Q14241	798 aa	Known RBP	10.15	□□□□□ -0.78
LRCH3-215	ENST00000476664	SREK1	Q8WXA9	508 aa	Known RBP	10.15	□□□□□ -0.78
LRCH3-215	ENST00000476664	UCN2	Q96RP3	112 aa		10.15	□□□□□ -0.78
LRCH3-215	ENST00000476664	JPH4	Q96JJ6	628 aa		10.14	□□□□□ -0.79
LRCH3-215	ENST00000476664	CCDC88B	A6NC98	1476 aa		10.14	□□□□□ -0.79
LRCH3-215	ENST00000476664	PPM1G	O15355	546 aa	Predicted RBP	10.13	□□□□□ -0.79
LRCH3-215	ENST00000476664	ARID4A	P29374	1257 aa	Predicted RBP	10.13	□□□□□ -0.79
LRCH3-215	ENST00000476664	ZBTB3	Q9H5J0	574 aa		10.13	□□□□□ -0.79
LRCH3-215	ENST00000476664	PCDHGA10	Q9Y5H3	936 aa		10.13	□□□□□ -0.79
LRCH3-215	ENST00000476664	ABCA5	Q8WWZ7	1642 aa		10.13	□□□□□ -0.79
LRCH3-215	ENST00000476664	TEX14	Q8IWB6	1497 aa		10.12	□□□□□ -0.79
LRCH3-215	ENST00000476664	MAP3K4	Q9Y6R4	1608 aa		10.12	□□□□□ -0.79
LRCH3-215	ENST00000476664	SEMA3F	Q13275	785 aa		10.12	□□□□□ -0.79
LRCH3-215	ENST00000476664	ADAMTS12	P58397	1594 aa		10.12	□□□□□ -0.79
LRCH3-215	ENST00000476664	TTC13	Q8NBP0	860 aa		10.11	□□□□□ -0.79
LRCH3-215	ENST00000476664	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.11	□□□□□ -0.79
LRCH3-215	ENST00000476664	PCDHB15	Q9Y5E8	787 aa		10.11	□□□□□ -0.79
LRCH3-215	ENST00000476664	NDUFV2	P19404	249 aa		10.1	□□□□□ -0.79
LRCH3-215	ENST00000476664	PRR7	Q8TB68	274 aa		10.1	□□□□□ -0.79
LRCH3-215	ENST00000476664	ASXL2	Q76L83	1435 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	ATP9B	O43861	1147 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	GPR37L1	O60883	481 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	ZNF326	Q5BKZ1	582 aa	Known RBP	10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	CABLES1	Q8TDN4	633 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	GIPC2	Q8TF65	315 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	TRIM34	Q9BYJ4	488 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	OCEL1	Q9H607	264 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	PLB1	Q6P1J6	1458 aa		10.09	□□□□□ -0.79
LRCH3-215	ENST00000476664	PNMA1	Q8ND90	353 aa		10.08	□□□□□ -0.8
LRCH3-215	ENST00000476664	MED1	Q15648	1581 aa	Predicted RBP	10.08	□□□□□ -0.8
LRCH3-215	ENST00000476664	MADD	Q8WXG6	1647 aa		10.07	□□□□□ -0.8
LRCH3-215	ENST00000476664	VAMP1	P23763	118 aa		10.07	□□□□□ -0.8
LRCH3-215	ENST00000476664	ZC3H6	P61129	1189 aa	Known RBP	10.07	□□□□□ -0.8
LRCH3-215	ENST00000476664	TMEM164	Q5U3C3	297 aa		10.07	□□□□□ -0.8
LRCH3-215	ENST00000476664	TBC1D9	Q6ZT07	1266 aa		10.07	□□□□□ -0.8
LRCH3-215	ENST00000476664	HELB	Q8NG08	1087 aa	Predicted RBP	10.07	□□□□□ -0.8

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