RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 MYO5CQ9NQX4 1742 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 TRIM44Q96DX7 344 aaPredicted RBP6.35□□□□□ -1.39
CCDC39-204ENST00000476379 BACH2Q9BYV9 841 aa6.35□□□□□ -1.39
CCDC39-204ENST00000476379 ZNF335Q9H4Z2 1342 aaPredicted RBP6.34□□□□□ -1.39
CCDC39-204ENST00000476379 ABCC1P33527 1531 aa6.34□□□□□ -1.39
CCDC39-204ENST00000476379 KIAA1107Q9UPP5 1409 aa6.34□□□□□ -1.39
CCDC39-204ENST00000476379 SLC4A10Q6U841 1118 aa6.34□□□□□ -1.39
CCDC39-204ENST00000476379 PROSER2Q86WR7 435 aaPredicted RBP6.34□□□□□ -1.39
CCDC39-204ENST00000476379 NUTM2BA6NNL0 878 aaPredicted RBP6.34□□□□□ -1.4
CCDC39-204ENST00000476379 NUTM2EB1AL46 878 aaPredicted RBP6.34□□□□□ -1.4
CCDC39-204ENST00000476379 NUTM2AQ8IVF1 878 aaPredicted RBP6.34□□□□□ -1.4
CCDC39-204ENST00000476379 SPINK5Q9NQ38 1064 aaPredicted RBP6.34□□□□□ -1.4
CCDC39-204ENST00000476379 FAM161AQ3B820 660 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 AMOTL2Q9Y2J4 779 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 CCDC9Q9Y3X0 531 aaKnown RBP6.33□□□□□ -1.4
CCDC39-204ENST00000476379 PPP2R1AP30153 589 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 CFAP53Q96M91 514 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 ESCO1Q5FWF5 840 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 DMRT2Q9Y5R5 561 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 PLEKHH1Q9ULM0 1364 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 FAM135AQ9P2D6 1515 aa6.33□□□□□ -1.4
CCDC39-204ENST00000476379 MTHFSP49914 203 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 PLA2R1Q13018 1463 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 MAP3K1Q13233 1512 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 PREX2Q70Z35 1606 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 SEC24BO95487 1268 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 HAP1P54257 671 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-204ENST00000476379 ANKRD45Q5TZF3 282 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 CABP1Q9NZU7 370 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 TCOF1Q13428 1488 aaKnown RBP6.32□□□□□ -1.4
CCDC39-204ENST00000476379 TEX14Q8IWB6 1497 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 ORAI2Q96SN7 254 aa6.32□□□□□ -1.4
CCDC39-204ENST00000476379 DNMT1P26358 1616 aaKnown RBP6.32□□□□□ -1.4
CCDC39-204ENST00000476379 IGHDP01880 384 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 TCP11L2Q8N4U5 519 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ATP10AO60312 1499 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 TNRQ92752 1358 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 NGDNQ8NEJ9 315 aaKnown RBP6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ZFYVE16Q7Z3T8 1539 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 EP400Q96L91 3159 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 MYH16Q9H6N6 1097 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 VGFO15240 615 aaPredicted RBP6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ERICH6BQ5W0A0 696 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ANKLE2Q86XL3 938 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 HSCBQ8IWL3 235 aa6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ANP32BQ92688 251 aaKnown RBP6.31□□□□□ -1.4
CCDC39-204ENST00000476379 ROCK1Q13464 1354 aa6.3□□□□□ -1.4
CCDC39-204ENST00000476379 DNTTIP2Q5QJE6 756 aaKnown RBP6.3□□□□□ -1.4
CCDC39-204ENST00000476379 PRDM15P57071 1507 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-204ENST00000476379 ZC3H6P61129 1189 aaKnown RBP6.3□□□□□ -1.4
CCDC39-204ENST00000476379 CENPQQ7L2Z9 268 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-204ENST00000476379 THEMISQ8N1K5 641 aaPredicted RBP6.3□□□□□ -1.4
CCDC39-204ENST00000476379 ADAMTS2O95450 1211 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 RRS1Q15050 365 aaKnown RBP6.29□□□□□ -1.4
CCDC39-204ENST00000476379 METP08581 1390 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 DISP3Q9P2K9 1392 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 PTMAP06454 111 aaKnown RBP6.29□□□□□ -1.4
CCDC39-204ENST00000476379 CDCA8Q53HL2 280 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 PDZRN3Q9UPQ7 1066 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 CHMP3Q9Y3E7 222 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 ABCA9Q8IUA7 1624 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 ABCA6Q8N139 1617 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 PRKCSHP14314 528 aaPredicted RBP6.29□□□□□ -1.4
CCDC39-204ENST00000476379 DCTN1Q14203 1278 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 ITSN2Q9NZM3 1697 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 EXOSC9Q06265 439 aaKnown RBP6.29□□□□□ -1.4
CCDC39-204ENST00000476379 CDK19Q9BWU1 502 aa6.29□□□□□ -1.4
CCDC39-204ENST00000476379 CHRNA2Q15822 529 aa6.28□□□□□ -1.4
CCDC39-204ENST00000476379 KIDINS220Q9ULH0 1771 aa6.28□□□□□ -1.4
CCDC39-204ENST00000476379 RIPK4P57078 832 aa6.28□□□□□ -1.4
CCDC39-204ENST00000476379 MIS18AQ9NYP9 233 aa6.28□□□□□ -1.4
CCDC39-204ENST00000476379 NAP1L2Q9ULW6 460 aaPredicted RBP6.28□□□□□ -1.4
CCDC39-204ENST00000476379 KIF13AQ9H1H9 1805 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 USHBP1Q8N6Y0 703 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 RNF214Q8ND24 703 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 PANK2Q9BZ23 570 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 NEO1Q92859 1461 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 NME9Q86XW9 330 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 VSIG10Q8N0Z9 540 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 PNNQ9H307 717 aaKnown RBP6.27□□□□□ -1.41
CCDC39-204ENST00000476379 PPP6R1Q9UPN7 881 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 GOLGA6L3A6NEY3 463 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 SLC52A1Q9NWF4 448 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 DUOX2Q9NRD8 1548 aa6.27□□□□□ -1.41
CCDC39-204ENST00000476379 SMG6Q86US8 1419 aaKnown RBP6.27□□□□□ -1.41
CCDC39-204ENST00000476379 LARP6Q9BRS8 491 aaKnown RBP6.27□□□□□ -1.41
CCDC39-204ENST00000476379 RWDD1Q9H446 243 aaPredicted RBP6.27□□□□□ -1.41
CCDC39-204ENST00000476379 SIGLEC1Q9BZZ2 1709 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 RLBP1P12271 317 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 PDE3BQ13370 1112 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 FAM182BQ5T319 152 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 TRIM6-TRIM34B2RNG4 842 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 TSHZ3Q63HK5 1081 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 DDX54Q8TDD1 881 aaKnown RBP6.26□□□□□ -1.41
CCDC39-204ENST00000476379 ZNF330Q9Y3S2 320 aaPredicted RBP6.26□□□□□ -1.41
CCDC39-204ENST00000476379 FRMPD1Q5SYB0 1578 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 HECW2Q9P2P5 1572 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 DIP2CQ9Y2E4 1556 aa6.26□□□□□ -1.41
CCDC39-204ENST00000476379 UBAP1LF5GYI3 381 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 DUSP27Q5VZP5 1158 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms