RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CDC42BPGQ6DT37 1551 aa18.26■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 KNDC1Q76NI1 1749 aa18.26■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 NRXN1Q9ULB1 1477 aa18.26■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 AFF2P51816 1311 aa18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 TMEM132EQ6IEE7 984 aa18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 WAPLQ7Z5K2 1190 aa18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 SIRT1Q96EB6 747 aa18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 C14orf93Q9H972 538 aaKnown RBP18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 CDK12Q9NYV4 1490 aaPredicted RBP18.24■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 RXRBP28702 533 aa18.23■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 YTHDC2Q9H6S0 1430 aaKnown RBP18.22■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 RAB3GAP2Q9H2M9 1393 aa18.21■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 PLEKHH1Q9ULM0 1364 aa18.21■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 COL22A1Q8NFW1 1626 aaPredicted RBP18.21■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 STK26Q9P289 416 aa18.21■□□□□ 0.51
MSH5-SAPCD1-205ENST00000476085 MYOM2P54296 1465 aa18.2■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 PXDNQ92626 1479 aa18.2■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 ESCO1Q5FWF5 840 aa18.19■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 UPF1Q92900 1129 aaKnown RBP eCLIP18.19■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 C8orf37Q96NL8 207 aa18.19■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 NPHP3Q7Z494 1330 aa18.19■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 QTRT2Q9H974 415 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 CFAP70Q5T0N1 1121 aa18.17■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 FNBP4Q8N3X1 1017 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 FMN2Q9NZ56 1722 aa18.17■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 FOXO3O43524 673 aa18.16■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 HRCP23327 699 aa18.16■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 RBM6P78332 1123 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 ADAMTS2O95450 1211 aa18.15■□□□□ 0.5
MSH5-SAPCD1-205ENST00000476085 NGLY1Q96IV0 654 aa18.14■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 DHX57Q6P158 1386 aaKnown RBP18.13■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 RGPD8O14715 1765 aaPredicted RBP18.12■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 RGS12O14924 1447 aa18.12■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 MARF1Q9Y4F3 1742 aaKnown RBP18.12■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 NUTM2FA1L443 756 aa18.11■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 DLC1Q96QB1 1528 aa18.11■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 ADGRB1O14514 1584 aa18.11■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 KIF1AQ12756 1690 aa18.1■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 XPCQ01831 940 aaPredicted RBP18.1■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 USP21Q9UK80 565 aa18.1■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 BCL9LQ86UU0 1499 aa18.09■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 ATRNO75882 1429 aa18.09■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 SPATA31A3Q5VYP0 1347 aa18.09■□□□□ 0.49
MSH5-SAPCD1-205ENST00000476085 TRPC5Q9UL62 973 aaPredicted RBP18.08■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 STAC3Q96MF2 364 aa18.07■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 PRAM1Q96QH2 718 aa18.07■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 KRT28Q7Z3Y7 464 aa18.05■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 PHF8Q9UPP1 1060 aa18.05■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 USP32Q8NFA0 1604 aa18.05■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 ADGRB2O60241 1585 aa18.04■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 SLIT2O94813 1529 aa18.03■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 ANKARQ7Z5J8 1434 aa18.02■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 DCAF11Q8TEB1 546 aa18.02■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.02■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 EP400Q96L91 3159 aa18.02■□□□□ 0.48
MSH5-SAPCD1-205ENST00000476085 SBNO1A3KN83 1393 aa18.02■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 SAFB2Q14151 953 aaKnown RBP eCLIP18.01■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 TNS3Q68CZ2 1445 aa18■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 POGKQ9P215 609 aa18■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 TRAK1Q9UPV9 953 aa18■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 KDM2AQ9Y2K7 1162 aa18■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 PSME1Q06323 249 aa17.99■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 GJD4Q96KN9 370 aaPredicted RBP17.99■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 UNC5CLQ8IV45 518 aa17.98■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 PRR36Q9H6K5 1346 aa17.98■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 TRPM3Q9HCF6 1732 aaPredicted RBP17.97■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 WASLO00401 505 aaPredicted RBP17.96■□□□□ 0.47
MSH5-SAPCD1-205ENST00000476085 GLI3P10071 1580 aa17.96■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ABCA3Q99758 1704 aa17.95■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ATAD2Q6PL18 1390 aa17.95■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 PMFBP1Q8TBY8 1022 aa17.95■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 CABLES1Q8TDN4 633 aa17.95■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 HIRIP3Q9BW71 556 aaPredicted RBP17.95■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ARHGEF10O15013 1369 aa17.94■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 TULP4Q9NRJ4 1543 aa17.94■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ARHGEF28Q8N1W1 1705 aaKnown RBP17.94■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 MINK1Q8N4C8 1332 aaPredicted RBP17.94■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ALS2Q96Q42 1657 aa17.93■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 NWD2Q9ULI1 1742 aa17.93■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 RALGAPBQ86X10 1494 aa17.93■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 ONECUT3O60422 494 aaPredicted RBP17.92■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 EIF3AQ14152 1382 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 VPS72Q15906 364 aa17.91■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 KIAA1210Q9ULL0 1709 aa17.91■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 FAM83GA6ND36 823 aa17.9■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 PLCH1Q4KWH8 1693 aa17.9■□□□□ 0.46
MSH5-SAPCD1-205ENST00000476085 BRWD3Q6RI45 1802 aa17.89■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 SRCAPQ6ZRS2 3230 aa17.89■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 CCDC125Q86Z20 511 aa17.88■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 CRYBG1Q9Y4K1 1723 aa17.88■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 ATP7BP35670 1465 aa17.88■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 GPRASP1Q5JY77 1395 aa17.87■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 LMOD2Q6P5Q4 547 aa17.86■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 NUDT16Q96DE0 195 aaKnown RBP17.86■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 NRAPQ86VF7 1730 aa17.86■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 ITSN1Q15811 1721 aa17.85■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 NBPF1Q3BBV0 1214 aa17.85■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 HAP1P54257 671 aaPredicted RBP17.84■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 SEPT12Q8IYM1 358 aa17.84■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 CDK19Q9BWU1 502 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms