RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-205ENST00000475993 DMRT2Q9Y5R5 561 aa13.24□□□□□ -0.29
ABCF1-205ENST00000475993 GPATCH8Q9UKJ3 1502 aaKnown RBP13.24□□□□□ -0.29
ABCF1-205ENST00000475993 ZSCAN20P17040 1043 aaPredicted RBP13.23□□□□□ -0.29
ABCF1-205ENST00000475993 NASPP49321 788 aaPredicted RBP13.23□□□□□ -0.29
ABCF1-205ENST00000475993 NGEFQ8N5V2 710 aa13.23□□□□□ -0.29
ABCF1-205ENST00000475993 TEX2Q8IWB9 1127 aa13.23□□□□□ -0.29
ABCF1-205ENST00000475993 SMC5Q8IY18 1101 aa13.23□□□□□ -0.29
ABCF1-205ENST00000475993 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
ABCF1-205ENST00000475993 IBTKQ9P2D0 1353 aaPredicted RBP13.23□□□□□ -0.29
ABCF1-205ENST00000475993 RAB3GAP1Q15042 981 aa13.22□□□□□ -0.29
ABCF1-205ENST00000475993 HS1BP3Q53T59 392 aa13.22□□□□□ -0.29
ABCF1-205ENST00000475993 MFAP1P55081 439 aaKnown RBP13.22□□□□□ -0.29
ABCF1-205ENST00000475993 SNX21Q969T3 373 aa13.22□□□□□ -0.29
ABCF1-205ENST00000475993 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.29
ABCF1-205ENST00000475993 ZBTB22O15209 634 aa13.21□□□□□ -0.29
ABCF1-205ENST00000475993 ZNF500O60304 480 aaPredicted RBP13.21□□□□□ -0.29
ABCF1-205ENST00000475993 CDK11BP21127 795 aaKnown RBP13.21□□□□□ -0.29
ABCF1-205ENST00000475993 RWDD1Q9H446 243 aaPredicted RBP13.21□□□□□ -0.29
ABCF1-205ENST00000475993 R3HCC1Q9Y3T6 440 aaKnown RBP13.21□□□□□ -0.29
ABCF1-205ENST00000475993 TROQ12816 1431 aaPredicted RBP13.21□□□□□ -0.29
ABCF1-205ENST00000475993 A2MP01023 1474 aa13.21□□□□□ -0.3
ABCF1-205ENST00000475993 FAM135AQ9P2D6 1515 aa13.2□□□□□ -0.3
ABCF1-205ENST00000475993 ADAMTS12P58397 1594 aa13.2□□□□□ -0.3
ABCF1-205ENST00000475993 EIF2AK4Q9P2K8 1649 aaKnown RBP13.19□□□□□ -0.3
ABCF1-205ENST00000475993 ASXL1Q8IXJ9 1541 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 UQCRHLA0A096LP55 91 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 DYNC1I1O14576 645 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 UQCRHP07919 91 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 RLBP1P12271 317 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 DNTTIP2Q5QJE6 756 aaKnown RBP13.19□□□□□ -0.3
ABCF1-205ENST00000475993 NOL7Q9UMY1 257 aaKnown RBP13.19□□□□□ -0.3
ABCF1-205ENST00000475993 NPC1L1Q9UHC9 1359 aa13.19□□□□□ -0.3
ABCF1-205ENST00000475993 PRG4Q92954 1404 aaPredicted RBP13.19□□□□□ -0.3
ABCF1-205ENST00000475993 RBM25P49756 843 aaKnown RBP13.18□□□□□ -0.3
ABCF1-205ENST00000475993 RAPGEF6Q8TEU7 1601 aa13.18□□□□□ -0.3
ABCF1-205ENST00000475993 C9orf84Q5VXU9 1444 aa13.18□□□□□ -0.3
ABCF1-205ENST00000475993 ADCY10Q96PN6 1610 aa13.18□□□□□ -0.3
ABCF1-205ENST00000475993 RARSP54136 660 aaKnown RBP13.18□□□□□ -0.3
ABCF1-205ENST00000475993 NUP160Q12769 1436 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 SYNMO15061 1565 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 KIF20AO95235 890 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.17□□□□□ -0.3
ABCF1-205ENST00000475993 ZNF777Q9ULD5 760 aaPredicted RBP13.17□□□□□ -0.3
ABCF1-205ENST00000475993 CLEC17AQ6ZS10 378 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 SHROOM2Q13796 1616 aa13.17□□□□□ -0.3
ABCF1-205ENST00000475993 CCDC141Q6ZP82 1450 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 CDC42BPAQ5VT25 1732 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 CHRM1P11229 460 aaPredicted RBP13.16□□□□□ -0.3
ABCF1-205ENST00000475993 KLHL40Q2TBA0 621 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 WWC1Q8IX03 1113 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 PDLIM2Q96JY6 352 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 ARHGAP31Q2M1Z3 1444 aa13.16□□□□□ -0.3
ABCF1-205ENST00000475993 RNF17Q9BXT8 1623 aaKnown RBP13.15□□□□□ -0.3
ABCF1-205ENST00000475993 RGL3Q3MIN7 710 aa13.15□□□□□ -0.3
ABCF1-205ENST00000475993 TNNQ9UQP3 1299 aa13.15□□□□□ -0.3
ABCF1-205ENST00000475993 ZNF445P59923 1031 aa13.14□□□□□ -0.31
ABCF1-205ENST00000475993 HAP1P54257 671 aaPredicted RBP13.14□□□□□ -0.31
ABCF1-205ENST00000475993 SAMD1Q6SPF0 538 aaPredicted RBP13.14□□□□□ -0.31
ABCF1-205ENST00000475993 MYO5CQ9NQX4 1742 aa13.14□□□□□ -0.31
ABCF1-205ENST00000475993 PLA2R1Q13018 1463 aa13.14□□□□□ -0.31
ABCF1-205ENST00000475993 XPCQ01831 940 aaPredicted RBP13.14□□□□□ -0.31
ABCF1-205ENST00000475993 CSPP1Q1MSJ5 1256 aa13.14□□□□□ -0.31
ABCF1-205ENST00000475993 KIAA0556O60303 1618 aa13.14□□□□□ -0.31
ABCF1-205ENST00000475993 SYNJ2O15056 1496 aa13.13□□□□□ -0.31
ABCF1-205ENST00000475993 HSP90AB1P08238 724 aaKnown RBP13.13□□□□□ -0.31
ABCF1-205ENST00000475993 CCDC94Q9BW85 323 aaPredicted RBP13.13□□□□□ -0.31
ABCF1-205ENST00000475993 GTPBP4Q9BZE4 634 aaKnown RBP13.13□□□□□ -0.31
ABCF1-205ENST00000475993 GRIN2AQ12879 1464 aa13.13□□□□□ -0.31
ABCF1-205ENST00000475993 DISP1Q96F81 1524 aa13.13□□□□□ -0.31
ABCF1-205ENST00000475993 LETM1O95202 739 aaPredicted RBP13.12□□□□□ -0.31
ABCF1-205ENST00000475993 MCM5P33992 734 aa13.12□□□□□ -0.31
ABCF1-205ENST00000475993 IRX3P78415 501 aaPredicted RBP13.12□□□□□ -0.31
ABCF1-205ENST00000475993 CERS3Q8IU89 383 aa13.12□□□□□ -0.31
ABCF1-205ENST00000475993 ZKSCAN5Q9Y2L8 839 aa13.12□□□□□ -0.31
ABCF1-205ENST00000475993 GOLGA6L22H0YM25 854 aa13.12□□□□□ -0.31
ABCF1-205ENST00000475993 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
ABCF1-205ENST00000475993 CGNQ9P2M7 1197 aaKnown RBP13.12□□□□□ -0.31
ABCF1-205ENST00000475993 PLPPR3Q6T4P5 718 aa13.11□□□□□ -0.31
ABCF1-205ENST00000475993 SASS6Q6UVJ0 657 aa13.11□□□□□ -0.31
ABCF1-205ENST00000475993 CBX1P83916 185 aa13.11□□□□□ -0.31
ABCF1-205ENST00000475993 MVPQ14764 893 aaKnown RBP13.11□□□□□ -0.31
ABCF1-205ENST00000475993 RGS22Q8NE09 1264 aa13.11□□□□□ -0.31
ABCF1-205ENST00000475993 DDX49Q9Y6V7 483 aaKnown RBP13.11□□□□□ -0.31
ABCF1-205ENST00000475993 MYOM1P52179 1685 aa13.1□□□□□ -0.31
ABCF1-205ENST00000475993 HDAC1Q13547 482 aaPredicted RBP13.1□□□□□ -0.31
ABCF1-205ENST00000475993 KIF2CQ99661 725 aa13.1□□□□□ -0.31
ABCF1-205ENST00000475993 SSFA2P28290 1259 aa13.1□□□□□ -0.31
ABCF1-205ENST00000475993 CDCA8Q53HL2 280 aa13.09□□□□□ -0.31
ABCF1-205ENST00000475993 IQGAP1P46940 1657 aa13.09□□□□□ -0.31
ABCF1-205ENST00000475993 BAG4O95429 457 aaKnown RBP13.09□□□□□ -0.31
ABCF1-205ENST00000475993 RBSNQ9H1K0 784 aa13.08□□□□□ -0.32
ABCF1-205ENST00000475993 K7ELQ4 463 aaPredicted RBP13.08□□□□□ -0.32
ABCF1-205ENST00000475993 CD2BP2O95400 341 aaKnown RBP13.08□□□□□ -0.32
ABCF1-205ENST00000475993 TSPY4P0CV99 314 aa13.07□□□□□ -0.32
ABCF1-205ENST00000475993 TSPY10P0CW01 314 aa13.07□□□□□ -0.32
ABCF1-205ENST00000475993 ZSCAN23Q3MJ62 389 aa13.07□□□□□ -0.32
ABCF1-205ENST00000475993 BCL2L13Q9BXK5 485 aa13.07□□□□□ -0.32
ABCF1-205ENST00000475993 KANK1Q14678 1352 aa13.06□□□□□ -0.32
ABCF1-205ENST00000475993 AEBP1Q8IUX7 1158 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms