RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 ZFYVE9O95405 1425 aa10.12□□□□□ -0.79
SHQ1-207ENST00000475558 RIMS2Q9UQ26 1411 aa10.12□□□□□ -0.79
SHQ1-207ENST00000475558 SETD1AO15047 1707 aaKnown RBP10.12□□□□□ -0.79
SHQ1-207ENST00000475558 COL16A1Q07092 1604 aaPredicted RBP10.11□□□□□ -0.79
SHQ1-207ENST00000475558 RXRBP28702 533 aa10.1□□□□□ -0.79
SHQ1-207ENST00000475558 PIK3R4Q99570 1358 aa10.1□□□□□ -0.79
SHQ1-207ENST00000475558 CHGAP10645 457 aaKnown RBP10.09□□□□□ -0.79
SHQ1-207ENST00000475558 STAC3Q96MF2 364 aa10.09□□□□□ -0.79
SHQ1-207ENST00000475558 MYO5BQ9ULV0 1848 aa10.09□□□□□ -0.79
SHQ1-207ENST00000475558 TMEM131LA2VDJ0 1609 aa10.08□□□□□ -0.8
SHQ1-207ENST00000475558 LRP6O75581 1613 aa10.08□□□□□ -0.8
SHQ1-207ENST00000475558 GABBR2O75899 941 aa10.08□□□□□ -0.8
SHQ1-207ENST00000475558 AHDC1Q5TGY3 1603 aaPredicted RBP10.07□□□□□ -0.8
SHQ1-207ENST00000475558 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.07□□□□□ -0.8
SHQ1-207ENST00000475558 SHPRHQ149N8 1683 aa10.07□□□□□ -0.8
SHQ1-207ENST00000475558 GCC2Q8IWJ2 1684 aa10.07□□□□□ -0.8
SHQ1-207ENST00000475558 ADAMTS13Q76LX8 1427 aa10.07□□□□□ -0.8
SHQ1-207ENST00000475558 DIP2AQ14689 1571 aa10.06□□□□□ -0.8
SHQ1-207ENST00000475558 NUTM2BA6NNL0 878 aaPredicted RBP10.06□□□□□ -0.8
SHQ1-207ENST00000475558 NUTM2EB1AL46 878 aaPredicted RBP10.06□□□□□ -0.8
SHQ1-207ENST00000475558 BRINP3Q76B58 766 aa10.06□□□□□ -0.8
SHQ1-207ENST00000475558 NUTM2AQ8IVF1 878 aaPredicted RBP10.06□□□□□ -0.8
SHQ1-207ENST00000475558 AMOTL2Q9Y2J4 779 aa10.06□□□□□ -0.8
SHQ1-207ENST00000475558 CDK12Q9NYV4 1490 aaPredicted RBP10.05□□□□□ -0.8
SHQ1-207ENST00000475558 NUTM2DQ5VT03 806 aaPredicted RBP10.05□□□□□ -0.8
SHQ1-207ENST00000475558 NEUROD1Q13562 356 aa10.04□□□□□ -0.8
SHQ1-207ENST00000475558 LRRC59Q96AG4 307 aaKnown RBP10.04□□□□□ -0.8
SHQ1-207ENST00000475558 DCCP43146 1447 aa10.04□□□□□ -0.8
SHQ1-207ENST00000475558 AFF2P51816 1311 aa10.04□□□□□ -0.8
SHQ1-207ENST00000475558 ANKRD30BQ9BXX2 1392 aa10.03□□□□□ -0.8
SHQ1-207ENST00000475558 TRPM2O94759 1503 aa10.03□□□□□ -0.8
SHQ1-207ENST00000475558 RBM6P78332 1123 aaKnown RBP10.02□□□□□ -0.81
SHQ1-207ENST00000475558 TONSLQ96HA7 1378 aa10.01□□□□□ -0.81
SHQ1-207ENST00000475558 PTPRUQ92729 1446 aa10.01□□□□□ -0.81
SHQ1-207ENST00000475558 SIN3AQ96ST3 1273 aa10.01□□□□□ -0.81
SHQ1-207ENST00000475558 QTRT2Q9H974 415 aaKnown RBP10.01□□□□□ -0.81
SHQ1-207ENST00000475558 UNC13BO14795 1591 aa10.01□□□□□ -0.81
SHQ1-207ENST00000475558 E9PCH4 1651 aa10□□□□□ -0.81
SHQ1-207ENST00000475558 ASXL1Q8IXJ9 1541 aa10□□□□□ -0.81
SHQ1-207ENST00000475558 MST1RQ04912 1400 aa9.99□□□□□ -0.81
SHQ1-207ENST00000475558 NGLY1Q96IV0 654 aa9.99□□□□□ -0.81
SHQ1-207ENST00000475558 C8orf37Q96NL8 207 aa9.99□□□□□ -0.81
SHQ1-207ENST00000475558 CD44P16070 742 aaKnown RBP9.98□□□□□ -0.81
SHQ1-207ENST00000475558 ZNF326Q5BKZ1 582 aaKnown RBP9.98□□□□□ -0.81
SHQ1-207ENST00000475558 NHSL1Q5SYE7 1610 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 IQGAP3Q86VI3 1631 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 LHX8Q68G74 356 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 PNPLA6Q8IY17 1366 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 RGS12O14924 1447 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 SETBP1Q9Y6X0 1596 aa9.97□□□□□ -0.81
SHQ1-207ENST00000475558 XRN1Q8IZH2 1706 aaKnown RBP9.96□□□□□ -0.81
SHQ1-207ENST00000475558 DDX17Q92841 729 aaKnown RBP9.96□□□□□ -0.82
SHQ1-207ENST00000475558 FARP1Q9Y4F1 1045 aaPredicted RBP9.96□□□□□ -0.82
SHQ1-207ENST00000475558 METP08581 1390 aa9.96□□□□□ -0.82
SHQ1-207ENST00000475558 ADGRL3Q9HAR2 1447 aa9.96□□□□□ -0.82
SHQ1-207ENST00000475558 ADAMTS2O95450 1211 aa9.95□□□□□ -0.82
SHQ1-207ENST00000475558 ATAD2Q6PL18 1390 aa9.95□□□□□ -0.82
SHQ1-207ENST00000475558 CCDC144AA2RUR9 1427 aa9.95□□□□□ -0.82
SHQ1-207ENST00000475558 NRXN3Q9Y4C0 1643 aa9.95□□□□□ -0.82
SHQ1-207ENST00000475558 RPGRIP1LQ68CZ1 1315 aa9.94□□□□□ -0.82
SHQ1-207ENST00000475558 L3MBTL2Q969R5 705 aa9.94□□□□□ -0.82
SHQ1-207ENST00000475558 USP21Q9UK80 565 aa9.94□□□□□ -0.82
SHQ1-207ENST00000475558 TRPC5Q9UL62 973 aaPredicted RBP9.94□□□□□ -0.82
SHQ1-207ENST00000475558 C1orf167Q5SNV9 1468 aa9.92□□□□□ -0.82
SHQ1-207ENST00000475558 SOS2Q07890 1332 aaPredicted RBP9.92□□□□□ -0.82
SHQ1-207ENST00000475558 SLC24A1O60721 1099 aa9.92□□□□□ -0.82
SHQ1-207ENST00000475558 CCDC125Q86Z20 511 aa9.92□□□□□ -0.82
SHQ1-207ENST00000475558 FNBP4Q8N3X1 1017 aaPredicted RBP9.92□□□□□ -0.82
SHQ1-207ENST00000475558 ZRANB1Q9UGI0 708 aa9.92□□□□□ -0.82
SHQ1-207ENST00000475558 PTCH1Q13635 1447 aa9.91□□□□□ -0.82
SHQ1-207ENST00000475558 SPHKAPQ2M3C7 1700 aa9.91□□□□□ -0.82
SHQ1-207ENST00000475558 VGFO15240 615 aaPredicted RBP9.91□□□□□ -0.82
SHQ1-207ENST00000475558 ORAI2Q96SN7 254 aa9.91□□□□□ -0.82
SHQ1-207ENST00000475558 NALCNQ8IZF0 1738 aa9.9□□□□□ -0.82
SHQ1-207ENST00000475558 LAMC1P11047 1609 aa9.9□□□□□ -0.82
SHQ1-207ENST00000475558 ZNF316A6NFI3 1004 aaPredicted RBP9.9□□□□□ -0.82
SHQ1-207ENST00000475558 SRCAPQ6ZRS2 3230 aa9.9□□□□□ -0.83
SHQ1-207ENST00000475558 NEXMIFQ5QGS0 1516 aa9.89□□□□□ -0.83
SHQ1-207ENST00000475558 DCAF11Q8TEB1 546 aa9.89□□□□□ -0.83
SHQ1-207ENST00000475558 CLCN6P51797 869 aa9.88□□□□□ -0.83
SHQ1-207ENST00000475558 ATRNO75882 1429 aa9.88□□□□□ -0.83
SHQ1-207ENST00000475558 NPHP3Q7Z494 1330 aa9.87□□□□□ -0.83
SHQ1-207ENST00000475558 KIF1BO60333 1816 aa9.87□□□□□ -0.83
SHQ1-207ENST00000475558 RGL3Q3MIN7 710 aa9.87□□□□□ -0.83
SHQ1-207ENST00000475558 ROBO2Q9HCK4 1378 aa9.87□□□□□ -0.83
SHQ1-207ENST00000475558 CLTCL1P53675 1640 aa9.86□□□□□ -0.83
SHQ1-207ENST00000475558 EIF4G2P78344 907 aaKnown RBP eCLIP9.86□□□□□ -0.83
SHQ1-207ENST00000475558 ESCO1Q5FWF5 840 aa9.86□□□□□ -0.83
SHQ1-207ENST00000475558 PRAG1Q86YV5 1406 aa9.86□□□□□ -0.83
SHQ1-207ENST00000475558 GJD4Q96KN9 370 aaPredicted RBP9.86□□□□□ -0.83
SHQ1-207ENST00000475558 COL22A1Q8NFW1 1626 aaPredicted RBP9.85□□□□□ -0.83
SHQ1-207ENST00000475558 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
SHQ1-207ENST00000475558 LRPPRCP42704 1394 aaKnown RBP9.85□□□□□ -0.83
SHQ1-207ENST00000475558 MYOM2P54296 1465 aa9.85□□□□□ -0.83
SHQ1-207ENST00000475558 DCBLD2Q96PD2 775 aa9.84□□□□□ -0.83
SHQ1-207ENST00000475558 BCL9LQ86UU0 1499 aa9.84□□□□□ -0.83
SHQ1-207ENST00000475558 FOXO3O43524 673 aa9.83□□□□□ -0.84
SHQ1-207ENST00000475558 POTEIP0CG38 1075 aa9.82□□□□□ -0.84
SHQ1-207ENST00000475558 UNC5CLQ8IV45 518 aa9.82□□□□□ -0.84
SHQ1-207ENST00000475558 EP400Q96L91 3159 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 432.7 ms