RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 AFF2P51816 1311 aa10.44□□□□□ -0.74
HDAC3-207ENST00000475549 ESCO1Q5FWF5 840 aa10.44□□□□□ -0.74
HDAC3-207ENST00000475549 CFAP70Q5T0N1 1121 aa10.44□□□□□ -0.74
HDAC3-207ENST00000475549 KIF1BO60333 1816 aa10.44□□□□□ -0.74
HDAC3-207ENST00000475549 NALCNQ8IZF0 1738 aa10.44□□□□□ -0.74
HDAC3-207ENST00000475549 NUTM2FA1L443 756 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 MSH5O43196 834 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 FOXO3O43524 673 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 ADAMTS2O95450 1211 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 RXRBP28702 533 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 XPCQ01831 940 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-207ENST00000475549 C8orf37Q96NL8 207 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 SHPRHQ149N8 1683 aa10.43□□□□□ -0.74
HDAC3-207ENST00000475549 SIRT1Q96EB6 747 aa10.42□□□□□ -0.74
HDAC3-207ENST00000475549 QTRT2Q9H974 415 aaKnown RBP10.42□□□□□ -0.74
HDAC3-207ENST00000475549 NHSL1Q5SYE7 1610 aa10.42□□□□□ -0.74
HDAC3-207ENST00000475549 PPLO60437 1756 aa10.42□□□□□ -0.74
HDAC3-207ENST00000475549 UPF1Q92900 1129 aaKnown RBP eCLIP10.41□□□□□ -0.74
HDAC3-207ENST00000475549 NRXN1Q9ULB1 1477 aa10.41□□□□□ -0.74
HDAC3-207ENST00000475549 YTHDC2Q9H6S0 1430 aaKnown RBP10.41□□□□□ -0.74
HDAC3-207ENST00000475549 ACIN1Q9UKV3 1341 aaKnown RBP10.4□□□□□ -0.74
HDAC3-207ENST00000475549 NGLY1Q96IV0 654 aa10.4□□□□□ -0.74
HDAC3-207ENST00000475549 FNBP4Q8N3X1 1017 aaPredicted RBP10.39□□□□□ -0.75
HDAC3-207ENST00000475549 NPHP3Q7Z494 1330 aa10.38□□□□□ -0.75
HDAC3-207ENST00000475549 PXDNQ92626 1479 aa10.38□□□□□ -0.75
HDAC3-207ENST00000475549 LAMC1P11047 1609 aa10.38□□□□□ -0.75
HDAC3-207ENST00000475549 HRCP23327 699 aa10.38□□□□□ -0.75
HDAC3-207ENST00000475549 RBM6P78332 1123 aaKnown RBP10.38□□□□□ -0.75
HDAC3-207ENST00000475549 PRAM1Q96QH2 718 aa10.38□□□□□ -0.75
HDAC3-207ENST00000475549 SAFB2Q14151 953 aaKnown RBP eCLIP10.37□□□□□ -0.75
HDAC3-207ENST00000475549 CDC42BPGQ6DT37 1551 aa10.37□□□□□ -0.75
HDAC3-207ENST00000475549 KDM2AQ9Y2K7 1162 aa10.37□□□□□ -0.75
HDAC3-207ENST00000475549 DCAF11Q8TEB1 546 aa10.36□□□□□ -0.75
HDAC3-207ENST00000475549 USP21Q9UK80 565 aa10.36□□□□□ -0.75
HDAC3-207ENST00000475549 DHX57Q6P158 1386 aaKnown RBP10.36□□□□□ -0.75
HDAC3-207ENST00000475549 MYOM2P54296 1465 aa10.36□□□□□ -0.75
HDAC3-207ENST00000475549 CDK12Q9NYV4 1490 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-207ENST00000475549 SPATA31A3Q5VYP0 1347 aa10.35□□□□□ -0.75
HDAC3-207ENST00000475549 RGS12O14924 1447 aa10.35□□□□□ -0.75
HDAC3-207ENST00000475549 KRT28Q7Z3Y7 464 aa10.35□□□□□ -0.75
HDAC3-207ENST00000475549 IFT172Q9UG01 1749 aa10.35□□□□□ -0.75
HDAC3-207ENST00000475549 BCL9LQ86UU0 1499 aa10.35□□□□□ -0.75
HDAC3-207ENST00000475549 PHF8Q9UPP1 1060 aa10.34□□□□□ -0.75
HDAC3-207ENST00000475549 TRAK1Q9UPV9 953 aa10.34□□□□□ -0.75
HDAC3-207ENST00000475549 CABLES1Q8TDN4 633 aa10.33□□□□□ -0.76
HDAC3-207ENST00000475549 HIRIP3Q9BW71 556 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-207ENST00000475549 POGKQ9P215 609 aa10.33□□□□□ -0.76
HDAC3-207ENST00000475549 TRPC5Q9UL62 973 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-207ENST00000475549 ADGRB1O14514 1584 aa10.33□□□□□ -0.76
HDAC3-207ENST00000475549 PMFBP1Q8TBY8 1022 aa10.32□□□□□ -0.76
HDAC3-207ENST00000475549 ATRNO75882 1429 aa10.32□□□□□ -0.76
HDAC3-207ENST00000475549 PRR36Q9H6K5 1346 aa10.32□□□□□ -0.76
HDAC3-207ENST00000475549 SRCAPQ6ZRS2 3230 aa10.31□□□□□ -0.76
HDAC3-207ENST00000475549 COL22A1Q8NFW1 1626 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-207ENST00000475549 GJD4Q96KN9 370 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-207ENST00000475549 STAC3Q96MF2 364 aa10.3□□□□□ -0.76
HDAC3-207ENST00000475549 MINK1Q8N4C8 1332 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-207ENST00000475549 DLC1Q96QB1 1528 aa10.29□□□□□ -0.76
HDAC3-207ENST00000475549 WASLO00401 505 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-207ENST00000475549 PLEKHG5O94827 1062 aa10.29□□□□□ -0.76
HDAC3-207ENST00000475549 PSME1Q06323 249 aa10.29□□□□□ -0.76
HDAC3-207ENST00000475549 UNC5CLQ8IV45 518 aa10.29□□□□□ -0.76
HDAC3-207ENST00000475549 KNDC1Q76NI1 1749 aa10.29□□□□□ -0.76
HDAC3-207ENST00000475549 FAM83GA6ND36 823 aa10.28□□□□□ -0.76
HDAC3-207ENST00000475549 SLIT2O94813 1529 aa10.28□□□□□ -0.76
HDAC3-207ENST00000475549 SBNO1A3KN83 1393 aa10.27□□□□□ -0.76
HDAC3-207ENST00000475549 FMN2Q9NZ56 1722 aa10.27□□□□□ -0.76
HDAC3-207ENST00000475549 TNS3Q68CZ2 1445 aa10.27□□□□□ -0.77
HDAC3-207ENST00000475549 NBPF1Q3BBV0 1214 aa10.27□□□□□ -0.77
HDAC3-207ENST00000475549 LMOD2Q6P5Q4 547 aa10.27□□□□□ -0.77
HDAC3-207ENST00000475549 EP400Q96L91 3159 aa10.26□□□□□ -0.77
HDAC3-207ENST00000475549 ANKARQ7Z5J8 1434 aa10.26□□□□□ -0.77
HDAC3-207ENST00000475549 ONECUT3O60422 494 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-207ENST00000475549 USP32Q8NFA0 1604 aa10.25□□□□□ -0.77
HDAC3-207ENST00000475549 RALGAPBQ86X10 1494 aa10.24□□□□□ -0.77
HDAC3-207ENST00000475549 VPS72Q15906 364 aa10.24□□□□□ -0.77
HDAC3-207ENST00000475549 NUDT16Q96DE0 195 aaKnown RBP10.24□□□□□ -0.77
HDAC3-207ENST00000475549 CDK19Q9BWU1 502 aa10.24□□□□□ -0.77
HDAC3-207ENST00000475549 ATAD2Q6PL18 1390 aa10.24□□□□□ -0.77
HDAC3-207ENST00000475549 ADGRB2O60241 1585 aa10.23□□□□□ -0.77
HDAC3-207ENST00000475549 HAP1P54257 671 aaPredicted RBP10.23□□□□□ -0.77
HDAC3-207ENST00000475549 ARHGEF10O15013 1369 aa10.23□□□□□ -0.77
HDAC3-207ENST00000475549 KIF1AQ12756 1690 aa10.22□□□□□ -0.77
HDAC3-207ENST00000475549 SEPT12Q8IYM1 358 aa10.22□□□□□ -0.77
HDAC3-207ENST00000475549 NGDNQ8NEJ9 315 aaKnown RBP10.22□□□□□ -0.77
HDAC3-207ENST00000475549 L3MBTL2Q969R5 705 aa10.22□□□□□ -0.77
HDAC3-207ENST00000475549 SIN3AQ96ST3 1273 aa10.22□□□□□ -0.77
HDAC3-207ENST00000475549 GPRASP1Q5JY77 1395 aa10.22□□□□□ -0.77
HDAC3-207ENST00000475549 BTG4Q9NY30 223 aa10.21□□□□□ -0.77
HDAC3-207ENST00000475549 TULP4Q9NRJ4 1543 aa10.21□□□□□ -0.78
HDAC3-207ENST00000475549 GLI3P10071 1580 aa10.21□□□□□ -0.78
HDAC3-207ENST00000475549 RGPD8O14715 1765 aaPredicted RBP10.21□□□□□ -0.78
HDAC3-207ENST00000475549 PLEKHG3A1L390 1219 aa10.2□□□□□ -0.78
HDAC3-207ENST00000475549 PAK3O75914 559 aaPredicted RBP10.2□□□□□ -0.78
HDAC3-207ENST00000475549 ATP7BP35670 1465 aa10.2□□□□□ -0.78
HDAC3-207ENST00000475549 NBPF8Q3BBV2 869 aa10.2□□□□□ -0.78
HDAC3-207ENST00000475549 CCDC61Q9Y6R9 512 aa10.2□□□□□ -0.78
HDAC3-207ENST00000475549 EIF3AQ14152 1382 aaKnown RBP10.19□□□□□ -0.78
HDAC3-207ENST00000475549 ACEP12821 1306 aa10.19□□□□□ -0.78
HDAC3-207ENST00000475549 NUTM2GQ5VZR2 741 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms