RNA–Protein interactions for RNA: ENST00000475432.6

HIF3A-207, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,004 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-207ENST00000475432 KNDC1Q76NI1 1749 aa24.76■■□□□ 1.55
HIF3A-207ENST00000475432 PTPRUQ92729 1446 aa24.76■■□□□ 1.55
HIF3A-207ENST00000475432 ROBO2Q9HCK4 1378 aa24.74■■□□□ 1.55
HIF3A-207ENST00000475432 CABP2Q9NPB3 220 aa24.73■■□□□ 1.55
HIF3A-207ENST00000475432 CNGB1Q14028 1251 aaPredicted RBP24.73■■□□□ 1.55
HIF3A-207ENST00000475432 AMOTL2Q9Y2J4 779 aa24.72■■□□□ 1.55
HIF3A-207ENST00000475432 SRPK2P78362 688 aaKnown RBP24.71■■□□□ 1.55
HIF3A-207ENST00000475432 PIK3R4Q99570 1358 aa24.7■■□□□ 1.54
HIF3A-207ENST00000475432 TMC1Q8TDI8 760 aa24.69■■□□□ 1.54
HIF3A-207ENST00000475432 CDK19Q9BWU1 502 aa24.69■■□□□ 1.54
HIF3A-207ENST00000475432 SLC12A5Q9H2X9 1139 aa24.69■■□□□ 1.54
HIF3A-207ENST00000475432 NPHP4O75161 1426 aaPredicted RBP24.69■■□□□ 1.54
HIF3A-207ENST00000475432 KNSTRNQ9Y448 316 aa24.68■■□□□ 1.54
HIF3A-207ENST00000475432 PTCH1Q13635 1447 aa24.67■■□□□ 1.54
HIF3A-207ENST00000475432 YTHDC1Q96MU7 727 aaKnown RBP24.67■■□□□ 1.54
HIF3A-207ENST00000475432 ATAD2Q6PL18 1390 aa24.67■■□□□ 1.54
HIF3A-207ENST00000475432 KTN1Q86UP2 1357 aaKnown RBP24.67■■□□□ 1.54
HIF3A-207ENST00000475432 NCKAP5LQ9HCH0 1330 aa24.67■■□□□ 1.54
HIF3A-207ENST00000475432 RALBP1Q15311 655 aa24.65■■□□□ 1.54
HIF3A-207ENST00000475432 WASLO00401 505 aaPredicted RBP24.64■■□□□ 1.53
HIF3A-207ENST00000475432 CARD14Q9BXL6 1004 aa24.64■■□□□ 1.53
HIF3A-207ENST00000475432 NINLQ9Y2I6 1382 aa24.63■■□□□ 1.53
HIF3A-207ENST00000475432 CC2D1BQ5T0F9 858 aaKnown RBP24.63■■□□□ 1.53
HIF3A-207ENST00000475432 XRN1Q8IZH2 1706 aaKnown RBP24.63■■□□□ 1.53
HIF3A-207ENST00000475432 PARD3Q8TEW0 1356 aa24.63■■□□□ 1.53
HIF3A-207ENST00000475432 AMER1Q5JTC6 1135 aaPredicted RBP24.62■■□□□ 1.53
HIF3A-207ENST00000475432 KCNA6P17658 529 aa24.62■■□□□ 1.53
HIF3A-207ENST00000475432 CCDC184Q52MB2 194 aa24.61■■□□□ 1.53
HIF3A-207ENST00000475432 ANKRD36BQ8N2N9 1353 aa24.59■■□□□ 1.53
HIF3A-207ENST00000475432 MYBBP1AQ9BQG0 1328 aaKnown RBP24.58■■□□□ 1.53
HIF3A-207ENST00000475432 NPC1L1Q9UHC9 1359 aa24.58■■□□□ 1.53
HIF3A-207ENST00000475432 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.58■■□□□ 1.52
HIF3A-207ENST00000475432 HSPA2P54652 639 aa24.57■■□□□ 1.52
HIF3A-207ENST00000475432 ADGRB2O60241 1585 aa24.57■■□□□ 1.52
HIF3A-207ENST00000475432 MRS2Q9HD23 443 aa24.57■■□□□ 1.52
HIF3A-207ENST00000475432 LMTK3Q96Q04 1460 aa24.56■■□□□ 1.52
HIF3A-207ENST00000475432 NSD3Q9BZ95 1437 aa24.56■■□□□ 1.52
HIF3A-207ENST00000475432 CABP1Q9NZU7 370 aa24.55■■□□□ 1.52
HIF3A-207ENST00000475432 A0A1W2PP64 1363 aa24.54■■□□□ 1.52
HIF3A-207ENST00000475432 CHD2O14647 1828 aaKnown RBP24.53■■□□□ 1.52
HIF3A-207ENST00000475432 TERF2IPQ9NYB0 399 aa24.53■■□□□ 1.52
HIF3A-207ENST00000475432 CD163L1Q9NR16 1453 aa24.52■■□□□ 1.52
HIF3A-207ENST00000475432 NUDT16Q96DE0 195 aaKnown RBP24.52■■□□□ 1.52
HIF3A-207ENST00000475432 NLRP13Q86W25 1043 aa24.49■■□□□ 1.51
HIF3A-207ENST00000475432 CCDC61Q9Y6R9 512 aa24.49■■□□□ 1.51
HIF3A-207ENST00000475432 BRD4O60885 1362 aaPredicted RBP24.49■■□□□ 1.51
HIF3A-207ENST00000475432 ATP7BP35670 1465 aa24.49■■□□□ 1.51
HIF3A-207ENST00000475432 PRR36Q9H6K5 1346 aa24.49■■□□□ 1.51
HIF3A-207ENST00000475432 PPIP5K1Q6PFW1 1433 aa24.49■■□□□ 1.51
HIF3A-207ENST00000475432 HDGFL2Q7Z4V5 671 aaPredicted RBP24.49■■□□□ 1.51
HIF3A-207ENST00000475432 CGNL1Q0VF96 1302 aa24.48■■□□□ 1.51
HIF3A-207ENST00000475432 USP32Q8NFA0 1604 aa24.46■■□□□ 1.51
HIF3A-207ENST00000475432 NWD1Q149M9 1564 aa24.45■■□□□ 1.5
HIF3A-207ENST00000475432 NUTM2FA1L443 756 aa24.44■■□□□ 1.5
HIF3A-207ENST00000475432 CENPBP07199 599 aaPredicted RBP24.43■■□□□ 1.5
HIF3A-207ENST00000475432 PPP2R1AP30153 589 aa24.43■■□□□ 1.5
HIF3A-207ENST00000475432 CPSF1Q10570 1443 aaKnown RBP24.43■■□□□ 1.5
HIF3A-207ENST00000475432 FAM9BQ8IZU0 186 aa24.42■■□□□ 1.5
HIF3A-207ENST00000475432 RBM33Q96EV2 1170 aaKnown RBP24.42■■□□□ 1.5
HIF3A-207ENST00000475432 NSD2O96028 1365 aa24.42■■□□□ 1.5
HIF3A-207ENST00000475432 CDC42BPGQ6DT37 1551 aa24.4■■□□□ 1.5
HIF3A-207ENST00000475432 MORC1Q86VD1 984 aa24.39■■□□□ 1.5
HIF3A-207ENST00000475432 PNISRQ8TF01 805 aaKnown RBP24.39■■□□□ 1.5
HIF3A-207ENST00000475432 ADGRL3Q9HAR2 1447 aa24.38■■□□□ 1.49
HIF3A-207ENST00000475432 PLEKHG3A1L390 1219 aa24.38■■□□□ 1.49
HIF3A-207ENST00000475432 NKTRP30414 1462 aaKnown RBP24.38■■□□□ 1.49
HIF3A-207ENST00000475432 TOPAZ1Q8N9V7 1692 aa24.38■■□□□ 1.49
HIF3A-207ENST00000475432 NALCNQ8IZF0 1738 aa24.37■■□□□ 1.49
HIF3A-207ENST00000475432 ANKARQ7Z5J8 1434 aa24.37■■□□□ 1.49
HIF3A-207ENST00000475432 FYB1O15117 783 aa24.36■■□□□ 1.49
HIF3A-207ENST00000475432 PROSER2Q86WR7 435 aaPredicted RBP24.36■■□□□ 1.49
HIF3A-207ENST00000475432 STRCQ7RTU9 1775 aa24.35■■□□□ 1.49
HIF3A-207ENST00000475432 ZNF692Q9BU19 519 aaPredicted RBP24.35■■□□□ 1.49
HIF3A-207ENST00000475432 EDC4Q6P2E9 1401 aaKnown RBP24.35■■□□□ 1.49
HIF3A-207ENST00000475432 GGNBP2Q9H3C7 697 aa24.34■■□□□ 1.49
HIF3A-207ENST00000475432 ACEP12821 1306 aa24.34■■□□□ 1.49
HIF3A-207ENST00000475432 C14orf37Q86TY3 774 aa24.34■■□□□ 1.49
HIF3A-207ENST00000475432 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.34■■□□□ 1.49
HIF3A-207ENST00000475432 FMN2Q9NZ56 1722 aa24.32■■□□□ 1.48
HIF3A-207ENST00000475432 TNNT2P45379 298 aaPredicted RBP24.32■■□□□ 1.48
HIF3A-207ENST00000475432 PMFBP1Q8TBY8 1022 aa24.3■■□□□ 1.48
HIF3A-207ENST00000475432 HNRNPUQ00839 825 aaKnown RBP eCLIP24.29■■□□□ 1.48
HIF3A-207ENST00000475432 MON2Q7Z3U7 1717 aa24.28■■□□□ 1.48
HIF3A-207ENST00000475432 AKAP12Q02952 1782 aa24.28■■□□□ 1.48
HIF3A-207ENST00000475432 POLR3AO14802 1390 aaPredicted RBP24.28■■□□□ 1.48
HIF3A-207ENST00000475432 ITSN1Q15811 1721 aa24.28■■□□□ 1.48
HIF3A-207ENST00000475432 TMEM94Q12767 1356 aa24.27■■□□□ 1.48
HIF3A-207ENST00000475432 USP6P35125 1406 aa24.27■■□□□ 1.48
HIF3A-207ENST00000475432 STRCP1A6NGW2 1772 aa24.27■■□□□ 1.48
HIF3A-207ENST00000475432 NGDNQ8NEJ9 315 aaKnown RBP24.26■■□□□ 1.47
HIF3A-207ENST00000475432 NME9Q86XW9 330 aa24.25■■□□□ 1.47
HIF3A-207ENST00000475432 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
HIF3A-207ENST00000475432 NCOA3Q9Y6Q9 1424 aa24.24■■□□□ 1.47
HIF3A-207ENST00000475432 RGPD8O14715 1765 aaPredicted RBP24.24■■□□□ 1.47
HIF3A-207ENST00000475432 TTC21BQ7Z4L5 1316 aa24.23■■□□□ 1.47
HIF3A-207ENST00000475432 KIF20BQ96Q89 1820 aa24.23■■□□□ 1.47
HIF3A-207ENST00000475432 ANKRD26Q9UPS8 1709 aa24.23■■□□□ 1.47
HIF3A-207ENST00000475432 SSH2Q76I76 1423 aa24.22■■□□□ 1.47
HIF3A-207ENST00000475432 NRKQ7Z2Y5 1582 aa24.22■■□□□ 1.47
HIF3A-207ENST00000475432 MTHFSP49914 203 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms