RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	TAF3	Q5VWG9	929 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	TXNDC2	Q86VQ3	553 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	ZCRB1	Q8TBF4	217 aa	Known RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	TPX2	Q9ULW0	747 aa	Known RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	MYO15B	Q96JP2	1530 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	SBNO2	Q9Y2G9	1366 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	RBM47	A0AV96	593 aa	Known RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	COQ9	O75208	318 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	PIK3R5	Q8WYR1	880 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	ZRANB2	O95218	330 aa	Known RBP eCLIP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	CCT2	P78371	535 aa	Known RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	AMOTL1	Q8IY63	956 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	MRVI1	Q9Y6F6	885 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	LARGE2	Q8N3Y3	721 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	GAS2L2	Q8NHY3	880 aa		4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	CCDC97	Q96F63	343 aa	Predicted RBP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	4.41	□□□□□ -1.7
UBR3-208	ENST00000474426	ZRSR2	Q15696	482 aa	Known RBP	4.4	□□□□□ -1.7
UBR3-208	ENST00000474426	DIEXF	Q68CQ4	756 aa	Known RBP	4.4	□□□□□ -1.7
UBR3-208	ENST00000474426	SYNPO2	Q9UMS6	1093 aa		4.4	□□□□□ -1.7
UBR3-208	ENST00000474426	COMMD10	Q9Y6G5	202 aa		4.4	□□□□□ -1.7
UBR3-208	ENST00000474426	CCDC180	Q9P1Z9	1646 aa		4.4	□□□□□ -1.7
UBR3-208	ENST00000474426	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	ARPC5L	Q9BPX5	153 aa		4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	TGFB3	P10600	412 aa		4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	SF3B2	Q13435	895 aa	Known RBP	4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	CT47A1	Q5JQC4	288 aa	Predicted RBP	4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	NYAP1	Q6ZVC0	841 aa		4.4	□□□□□ -1.71
UBR3-208	ENST00000474426	LMOD3	Q0VAK6	560 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	CALR3	Q96L12	384 aa	Known RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	FBXO9	Q9UK97	447 aa	Predicted RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	KIF20A	O95235	890 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	NUTM2G	Q5VZR2	741 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	TMX4	Q9H1E5	349 aa	Predicted RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	PHF8	Q9UPP1	1060 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	SMAP	O00193	183 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	TCF3	P15923	654 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	COPB2	P35606	906 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	SKIV2L	Q15477	1246 aa	Known RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	FAM13B	Q9NYF5	915 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	MAP3K20	Q9NYL2	800 aa	Known RBP	4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	KLF15	Q9UIH9	416 aa		4.39	□□□□□ -1.71
UBR3-208	ENST00000474426	CCDC189	A1A4V9	331 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	GTPBP6	O43824	516 aa	Predicted RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	WDHD1	O75717	1129 aa	Predicted RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	HDGFL1	Q5TGJ6	251 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	SNRNP27	Q8WVK2	155 aa	Known RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	JADE2	Q9NQC1	790 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	UNC13A	Q9UPW8	1703 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	ANP32A	P39687	249 aa	Known RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	FLII	Q13045	1269 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	ENOX1	Q8TC92	643 aa	Known RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	UBXN4	Q92575	508 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	SYNRG	Q9UMZ2	1314 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	CCDC94	Q9BW85	323 aa	Predicted RBP	4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	CEP83	Q9Y592	693 aa		4.38	□□□□□ -1.71
UBR3-208	ENST00000474426	CD151	P48509	253 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	ICE2	Q659A1	982 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	DPH6	Q7L8W6	267 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	MICALL1	Q8N3F8	863 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	POM121	Q96HA1	1249 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	RANBP17	Q9H2T7	1088 aa	Known RBP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	CHPF2	Q9P2E5	772 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	SERPINA10	Q9UK55	444 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	EIF3J	O75822	258 aa	Known RBP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	CAPN2	P17655	700 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	SND1	Q7KZF4	910 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	C8orf37	Q96NL8	207 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	SENP7	Q9BQF6	1050 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	SF3A1	Q15459	793 aa	Known RBP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	RPAIN	Q86UA6	219 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	CADPS2	Q86UW7	1296 aa		4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	C1orf131	Q8NDD1	294 aa	Known RBP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	CIZ1	Q9ULV3	898 aa	Predicted RBP	4.37	□□□□□ -1.71
UBR3-208	ENST00000474426	NAT2	P11245	290 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	PAX7	P23759	505 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	TSR1	Q2NL82	804 aa	Known RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	ACRBP	Q8NEB7	543 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	SEZ6L	Q9BYH1	1024 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	INO80B	Q9C086	356 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	ATXN8OS	P0DMR3	200 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	PDE6B	P35913	854 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	IRX5	P78411	483 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	TTC30A	Q86WT1	665 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	RSPH1	Q8WYR4	309 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	MYCBP	Q99417	103 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	QTRT2	Q9H974	415 aa	Known RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	IVNS1ABP	Q9Y6Y0	642 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	PLEKHG3	A1L390	1219 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	SKIL	P12757	684 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	ZBTB9	Q96C00	473 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	MKRN1	Q9UHC7	482 aa	Known RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	ANAPC4	Q9UJX5	808 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	SETD1B	Q9UPS6	1966 aa	Known RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	ZSCAN20	P17040	1043 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	MLEC	Q14165	292 aa		4.36	□□□□□ -1.71
UBR3-208	ENST00000474426	NOM1	Q5C9Z4	860 aa	Known RBP	4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms