RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 SHPRHQ149N8 1683 aa27.27■■□□□ 1.96
COL18A1-207ENST00000473212 MYO3AQ8NEV4 1616 aa27.27■■□□□ 1.96
COL18A1-207ENST00000473212 C14orf93Q9H972 538 aaKnown RBP27.27■■□□□ 1.96
COL18A1-207ENST00000473212 GSE1Q14687 1217 aa27.27■■□□□ 1.96
COL18A1-207ENST00000473212 SBNO2Q9Y2G9 1366 aa27.26■■□□□ 1.96
COL18A1-207ENST00000473212 SLC24A1O60721 1099 aa27.26■■□□□ 1.95
COL18A1-207ENST00000473212 SAFB2Q14151 953 aaKnown RBP eCLIP27.26■■□□□ 1.95
COL18A1-207ENST00000473212 TCP11L2Q8N4U5 519 aa27.26■■□□□ 1.95
COL18A1-207ENST00000473212 RTN4Q9NQC3 1192 aaKnown RBP27.26■■□□□ 1.95
COL18A1-207ENST00000473212 CANXP27824 592 aaKnown RBP27.26■■□□□ 1.95
COL18A1-207ENST00000473212 MTHFSP49914 203 aa27.26■■□□□ 1.95
COL18A1-207ENST00000473212 QRICH2Q9H0J4 1663 aa27.24■■□□□ 1.95
COL18A1-207ENST00000473212 ZNF518AQ6AHZ1 1483 aa27.24■■□□□ 1.95
COL18A1-207ENST00000473212 ADGRB1O14514 1584 aa27.23■■□□□ 1.95
COL18A1-207ENST00000473212 NGEFQ8N5V2 710 aa27.23■■□□□ 1.95
COL18A1-207ENST00000473212 FRMPD1Q5SYB0 1578 aa27.23■■□□□ 1.95
COL18A1-207ENST00000473212 CGNL1Q0VF96 1302 aa27.22■■□□□ 1.95
COL18A1-207ENST00000473212 RLBP1P12271 317 aa27.22■■□□□ 1.95
COL18A1-207ENST00000473212 PDE3AQ14432 1141 aa27.22■■□□□ 1.95
COL18A1-207ENST00000473212 PPLO60437 1756 aa27.21■■□□□ 1.95
COL18A1-207ENST00000473212 LMTK2Q8IWU2 1503 aa27.2■■□□□ 1.95
COL18A1-207ENST00000473212 SEC24BO95487 1268 aa27.2■■□□□ 1.94
COL18A1-207ENST00000473212 CLUAP1Q96AJ1 413 aa27.2■■□□□ 1.94
COL18A1-207ENST00000473212 RUNDC1Q96C34 613 aa27.2■■□□□ 1.94
COL18A1-207ENST00000473212 ZC3H13Q5T200 1668 aaKnown RBP27.19■■□□□ 1.94
COL18A1-207ENST00000473212 SETBP1Q9Y6X0 1596 aa27.19■■□□□ 1.94
COL18A1-207ENST00000473212 OSCARQ8IYS5 282 aa27.19■■□□□ 1.94
COL18A1-207ENST00000473212 CABP2Q9NPB3 220 aa27.19■■□□□ 1.94
COL18A1-207ENST00000473212 RARSP54136 660 aaKnown RBP27.18■■□□□ 1.94
COL18A1-207ENST00000473212 RAPGEF3O95398 923 aa27.17■■□□□ 1.94
COL18A1-207ENST00000473212 FRAT2O75474 233 aaPredicted RBP27.16■■□□□ 1.94
COL18A1-207ENST00000473212 IQSEC2Q5JU85 1478 aa27.15■■□□□ 1.94
COL18A1-207ENST00000473212 USP19O94966 1318 aa27.14■■□□□ 1.94
COL18A1-207ENST00000473212 PCDHB15Q9Y5E8 787 aa27.14■■□□□ 1.94
COL18A1-207ENST00000473212 POGZQ7Z3K3 1410 aa27.14■■□□□ 1.94
COL18A1-207ENST00000473212 NINLQ9Y2I6 1382 aa27.14■■□□□ 1.93
COL18A1-207ENST00000473212 BRPF3Q9ULD4 1205 aa27.14■■□□□ 1.93
COL18A1-207ENST00000473212 CD109Q6YHK3 1445 aa27.14■■□□□ 1.93
COL18A1-207ENST00000473212 PHF23Q9BUL5 403 aaPredicted RBP27.13■■□□□ 1.93
COL18A1-207ENST00000473212 SIGLEC1Q9BZZ2 1709 aa27.13■■□□□ 1.93
COL18A1-207ENST00000473212 STK26Q9P289 416 aa27.13■■□□□ 1.93
COL18A1-207ENST00000473212 VIRMAQ69YN4 1812 aaKnown RBP27.12■■□□□ 1.93
COL18A1-207ENST00000473212 U2AF1L5P0DN76 240 aaPredicted RBP27.11■■□□□ 1.93
COL18A1-207ENST00000473212 U2AF1Q01081 240 aaKnown RBP eCLIP27.11■■□□□ 1.93
COL18A1-207ENST00000473212 TULP4Q9NRJ4 1543 aa27.11■■□□□ 1.93
COL18A1-207ENST00000473212 MAPK8IP3Q9UPT6 1336 aa27.1■■□□□ 1.93
COL18A1-207ENST00000473212 ABCC3O15438 1527 aa27.1■■□□□ 1.93
COL18A1-207ENST00000473212 GLI2P10070 1586 aa27.09■■□□□ 1.93
COL18A1-207ENST00000473212 NPM1P06748 294 aaKnown RBP eCLIP27.09■■□□□ 1.93
COL18A1-207ENST00000473212 TSR2Q969E8 191 aaKnown RBP27.08■■□□□ 1.92
COL18A1-207ENST00000473212 HECW2Q9P2P5 1572 aa27.06■■□□□ 1.92
COL18A1-207ENST00000473212 GGNBP2Q9H3C7 697 aa27.06■■□□□ 1.92
COL18A1-207ENST00000473212 EVC2Q86UK5 1308 aa27.05■■□□□ 1.92
COL18A1-207ENST00000473212 IDI1Q13907 227 aa27.05■■□□□ 1.92
COL18A1-207ENST00000473212 CFAP53Q96M91 514 aa27.05■■□□□ 1.92
COL18A1-207ENST00000473212 MLH3Q9UHC1 1453 aa27.04■■□□□ 1.92
COL18A1-207ENST00000473212 WDR63Q8IWG1 891 aa27.04■■□□□ 1.92
COL18A1-207ENST00000473212 ANO8Q9HCE9 1232 aaPredicted RBP27.04■■□□□ 1.92
COL18A1-207ENST00000473212 ARHGEF28Q8N1W1 1705 aaKnown RBP27.03■■□□□ 1.92
COL18A1-207ENST00000473212 ANKRD36BQ8N2N9 1353 aa27.03■■□□□ 1.92
COL18A1-207ENST00000473212 RPGRIP1LQ68CZ1 1315 aa27.02■■□□□ 1.92
COL18A1-207ENST00000473212 PMFBP1Q8TBY8 1022 aa27.01■■□□□ 1.92
COL18A1-207ENST00000473212 U2SURPO15042 1029 aaKnown RBP27.01■■□□□ 1.91
COL18A1-207ENST00000473212 CAMSAP1Q5T5Y3 1602 aa27.01■■□□□ 1.91
COL18A1-207ENST00000473212 NEXMIFQ5QGS0 1516 aa27.01■■□□□ 1.91
COL18A1-207ENST00000473212 A0A1W2PP64 1363 aa27■■□□□ 1.91
COL18A1-207ENST00000473212 SRPK2P78362 688 aaKnown RBP27■■□□□ 1.91
COL18A1-207ENST00000473212 PDZRN3Q9UPQ7 1066 aa27■■□□□ 1.91
COL18A1-207ENST00000473212 VGFO15240 615 aaPredicted RBP26.99■■□□□ 1.91
COL18A1-207ENST00000473212 USP32Q8NFA0 1604 aa26.98■■□□□ 1.91
COL18A1-207ENST00000473212 MINK1Q8N4C8 1332 aaPredicted RBP26.98■■□□□ 1.91
COL18A1-207ENST00000473212 NLRP1Q9C000 1473 aa26.97■■□□□ 1.91
COL18A1-207ENST00000473212 BECN1Q14457 450 aa26.97■■□□□ 1.91
COL18A1-207ENST00000473212 CCDC27Q2M243 656 aa26.96■■□□□ 1.91
COL18A1-207ENST00000473212 AAMPQ13685 434 aa26.95■■□□□ 1.91
COL18A1-207ENST00000473212 EXOSC9Q06265 439 aaKnown RBP26.94■■□□□ 1.9
COL18A1-207ENST00000473212 SLKQ9H2G2 1235 aaPredicted RBP26.94■■□□□ 1.9
COL18A1-207ENST00000473212 FBLN1P23142 703 aa26.94■■□□□ 1.9
COL18A1-207ENST00000473212 PIK3C2BO00750 1634 aa26.93■■□□□ 1.9
COL18A1-207ENST00000473212 MYH16Q9H6N6 1097 aa26.93■■□□□ 1.9
COL18A1-207ENST00000473212 PLEKHF1Q96S99 279 aa26.92■■□□□ 1.9
COL18A1-207ENST00000473212 TRIM35Q9UPQ4 493 aa26.92■■□□□ 1.9
COL18A1-207ENST00000473212 MYO5BQ9ULV0 1848 aa26.92■■□□□ 1.9
COL18A1-207ENST00000473212 MVPQ14764 893 aaKnown RBP26.91■■□□□ 1.9
COL18A1-207ENST00000473212 PRAM1Q96QH2 718 aa26.91■■□□□ 1.9
COL18A1-207ENST00000473212 RWDD1Q9H446 243 aaPredicted RBP26.9■■□□□ 1.9
COL18A1-207ENST00000473212 FYB1O15117 783 aa26.9■■□□□ 1.9
COL18A1-207ENST00000473212 TMPOP42166 694 aaKnown RBP26.9■■□□□ 1.9
COL18A1-207ENST00000473212 YEATS2Q9ULM3 1422 aa26.9■■□□□ 1.9
COL18A1-207ENST00000473212 UPF2Q9HAU5 1272 aaKnown RBP26.89■■□□□ 1.9
COL18A1-207ENST00000473212 ABCC11Q96J66 1382 aa26.89■■□□□ 1.9
COL18A1-207ENST00000473212 SMC4Q9NTJ3 1288 aa26.89■■□□□ 1.89
COL18A1-207ENST00000473212 ADGRB2O60241 1585 aa26.88■■□□□ 1.89
COL18A1-207ENST00000473212 FTSJ3Q8IY81 847 aaKnown RBP26.88■■□□□ 1.89
COL18A1-207ENST00000473212 FBXO31Q5XUX0 539 aaPredicted RBP26.88■■□□□ 1.89
COL18A1-207ENST00000473212 ZKSCAN2Q63HK3 967 aa26.88■■□□□ 1.89
COL18A1-207ENST00000473212 SSH1Q8WYL5 1049 aa26.88■■□□□ 1.89
COL18A1-207ENST00000473212 TBC1D32Q96NH3 1257 aa26.88■■□□□ 1.89
COL18A1-207ENST00000473212 DIP2CQ9Y2E4 1556 aa26.88■■□□□ 1.89
COL18A1-207ENST00000473212 TRIM27P14373 513 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms