RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NUTM2E	B1AL46	878 aa	Predicted RBP	7.74	□□□□□ -1.17
PTCD3-209	ENST00000472044	NUTM2D	Q5VT03	806 aa	Predicted RBP	7.74	□□□□□ -1.17
PTCD3-209	ENST00000472044	THSD4	Q6ZMP0	1018 aa		7.74	□□□□□ -1.17
PTCD3-209	ENST00000472044	NUTM2A	Q8IVF1	878 aa	Predicted RBP	7.74	□□□□□ -1.17
PTCD3-209	ENST00000472044		A6NJR5	290 aa		7.73	□□□□□ -1.17
PTCD3-209	ENST00000472044	APLP1	P51693	650 aa		7.73	□□□□□ -1.17
PTCD3-209	ENST00000472044	SLC27A5	Q9Y2P5	690 aa		7.73	□□□□□ -1.17
PTCD3-209	ENST00000472044	SALL2	Q9Y467	1007 aa	Predicted RBP	7.73	□□□□□ -1.17
PTCD3-209	ENST00000472044		Q3C1V9	767 aa		7.72	□□□□□ -1.17
PTCD3-209	ENST00000472044	PUS10	Q3MIT2	529 aa	Known RBP	7.72	□□□□□ -1.17
PTCD3-209	ENST00000472044	NYAP1	Q6ZVC0	841 aa		7.72	□□□□□ -1.17
PTCD3-209	ENST00000472044	SNRK	Q9NRH2	765 aa		7.72	□□□□□ -1.17
PTCD3-209	ENST00000472044	WBP1L	Q9NX94	342 aa		7.72	□□□□□ -1.17
PTCD3-209	ENST00000472044	UBTF	P17480	764 aa	Known RBP	7.71	□□□□□ -1.18
PTCD3-209	ENST00000472044	RETREG3	Q86VR2	466 aa		7.71	□□□□□ -1.18
PTCD3-209	ENST00000472044	C6orf229	H3BNL8	230 aa		7.7	□□□□□ -1.18
PTCD3-209	ENST00000472044	AP1G2	O75843	785 aa		7.7	□□□□□ -1.18
PTCD3-209	ENST00000472044	PCDHB3	Q9Y5E6	796 aa		7.7	□□□□□ -1.18
PTCD3-209	ENST00000472044	CFAP99	D6REC4	459 aa		7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	MMRN1	Q13201	1228 aa		7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	DESI1	Q6ICB0	168 aa		7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	SCUBE3	Q8IX30	993 aa		7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	MTMR14	Q8NCE2	650 aa		7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	KCTD12	Q96CX2	325 aa	Known RBP	7.69	□□□□□ -1.18
PTCD3-209	ENST00000472044	APBB1	O00213	710 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	NR1I2	O75469	434 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	USP17L8	P0C7I0	530 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	BRICD5	Q6PL45	260 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	SPNS2	Q8IVW8	549 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	HELB	Q8NG08	1087 aa	Predicted RBP	7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	SYMPK	Q92797	1274 aa	Known RBP	7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	THAP11	Q96EK4	314 aa		7.68	□□□□□ -1.18
PTCD3-209	ENST00000472044	CTDSPL2	Q05D32	466 aa		7.67	□□□□□ -1.18
PTCD3-209	ENST00000472044	BLOC1S3	Q6QNY0	202 aa		7.67	□□□□□ -1.18
PTCD3-209	ENST00000472044	PRR7	Q8TB68	274 aa		7.67	□□□□□ -1.18
PTCD3-209	ENST00000472044	CLUAP1	Q96AJ1	413 aa		7.67	□□□□□ -1.18
PTCD3-209	ENST00000472044	COG6	Q9Y2V7	657 aa		7.67	□□□□□ -1.18
PTCD3-209	ENST00000472044	RAD21	O60216	631 aa		7.66	□□□□□ -1.18
PTCD3-209	ENST00000472044	FMNL1	O95466	1100 aa	Predicted RBP	7.66	□□□□□ -1.18
PTCD3-209	ENST00000472044	FNBP4	Q8N3X1	1017 aa	Predicted RBP	7.66	□□□□□ -1.18
PTCD3-209	ENST00000472044	USB1	Q9BQ65	265 aa	Known RBP	7.66	□□□□□ -1.18
PTCD3-209	ENST00000472044	RNF19B	Q6ZMZ0	732 aa		7.65	□□□□□ -1.18
PTCD3-209	ENST00000472044	POM121	Q96HA1	1249 aa		7.65	□□□□□ -1.18
PTCD3-209	ENST00000472044	GJD4	Q96KN9	370 aa	Predicted RBP	7.65	□□□□□ -1.18
PTCD3-209	ENST00000472044	SUPT5H	O00267	1087 aa	Known RBP	7.64	□□□□□ -1.19
PTCD3-209	ENST00000472044	TRAK2	O60296	914 aa		7.64	□□□□□ -1.19
PTCD3-209	ENST00000472044	PRM3	Q9NNZ6	103 aa		7.64	□□□□□ -1.19
PTCD3-209	ENST00000472044	MYT1L	Q9UL68	1186 aa		7.64	□□□□□ -1.19
PTCD3-209	ENST00000472044	MSS51	Q4VC12	460 aa		7.63	□□□□□ -1.19
PTCD3-209	ENST00000472044	PROSER2	Q86WR7	435 aa	Predicted RBP	7.63	□□□□□ -1.19
PTCD3-209	ENST00000472044	LYPD8	Q6UX82	237 aa		7.62	□□□□□ -1.19
PTCD3-209	ENST00000472044	TSC1	Q92574	1164 aa		7.62	□□□□□ -1.19
PTCD3-209	ENST00000472044	TRIM34	Q9BYJ4	488 aa		7.62	□□□□□ -1.19
PTCD3-209	ENST00000472044	HMX1	Q9NP08	348 aa	Predicted RBP	7.62	□□□□□ -1.19
PTCD3-209	ENST00000472044	ZPR1	O75312	459 aa		7.61	□□□□□ -1.19
PTCD3-209	ENST00000472044	PTPN5	P54829	565 aa		7.61	□□□□□ -1.19
PTCD3-209	ENST00000472044	LRRN4	Q8WUT4	740 aa		7.61	□□□□□ -1.19
PTCD3-209	ENST00000472044	PER1	O15534	1290 aa	Predicted RBP	7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	JUND	P17535	347 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	COPS2	P61201	443 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	TJAP1	Q5JTD0	557 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	FAM160A2	Q8N612	972 aa	Predicted RBP	7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	SPSB2	Q99619	263 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	MTR	Q99707	1265 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	GDPD2	Q9HCC8	539 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	NDUFB9	Q9Y6M9	179 aa		7.6	□□□□□ -1.19
PTCD3-209	ENST00000472044	MMP16	P51512	607 aa		7.59	□□□□□ -1.19
PTCD3-209	ENST00000472044	IL21	Q9HBE4	155 aa		7.59	□□□□□ -1.19
PTCD3-209	ENST00000472044	TBC1D2B	Q9UPU7	963 aa		7.59	□□□□□ -1.19
PTCD3-209	ENST00000472044	DXO	O77932	396 aa	Known RBP	7.58	□□□□□ -1.2
PTCD3-209	ENST00000472044	ADH1B	P00325	375 aa		7.58	□□□□□ -1.2
PTCD3-209	ENST00000472044	PTPRN	Q16849	979 aa		7.58	□□□□□ -1.2
PTCD3-209	ENST00000472044	GPR37L1	O60883	481 aa		7.57	□□□□□ -1.2
PTCD3-209	ENST00000472044	WWC1	Q8IX03	1113 aa		7.57	□□□□□ -1.2
PTCD3-209	ENST00000472044	F12	P00748	615 aa	Predicted RBP	7.56	□□□□□ -1.2
PTCD3-209	ENST00000472044	NR6A1	Q15406	480 aa		7.56	□□□□□ -1.2
PTCD3-209	ENST00000472044	EPS8L1	Q8TE68	723 aa		7.56	□□□□□ -1.2
PTCD3-209	ENST00000472044	C1orf115	Q9H7X2	142 aa		7.56	□□□□□ -1.2
PTCD3-209	ENST00000472044	HCST	Q9UBK5	93 aa		7.56	□□□□□ -1.2
PTCD3-209	ENST00000472044	ABL2	P42684	1182 aa		7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	IRF5	Q13568	498 aa		7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	ZNF516	Q92618	1163 aa		7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	RNF166	Q96A37	237 aa	Predicted RBP	7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	EVA1B	Q9NVM1	165 aa		7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	ZNF330	Q9Y3S2	320 aa	Predicted RBP	7.55	□□□□□ -1.2
PTCD3-209	ENST00000472044	TLL1	O43897	1013 aa		7.54	□□□□□ -1.2
PTCD3-209	ENST00000472044	WASHC4	Q2M389	1173 aa		7.54	□□□□□ -1.2
PTCD3-209	ENST00000472044	ARID3C	A6NKF2	412 aa		7.53	□□□□□ -1.2
PTCD3-209	ENST00000472044	CCNYL3	P0C7X3	344 aa		7.53	□□□□□ -1.2
PTCD3-209	ENST00000472044	PNMA1	Q8ND90	353 aa		7.53	□□□□□ -1.2
PTCD3-209	ENST00000472044	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.53	□□□□□ -1.2
PTCD3-209	ENST00000472044	ITGBL1	O95965	494 aa	Predicted RBP	7.52	□□□□□ -1.21
PTCD3-209	ENST00000472044	NUDT12	Q9BQG2	462 aa		7.52	□□□□□ -1.21
PTCD3-209	ENST00000472044	SLC6A16	Q9GZN6	736 aa		7.52	□□□□□ -1.21
PTCD3-209	ENST00000472044	PRDM9	Q9NQV7	894 aa		7.52	□□□□□ -1.21
PTCD3-209	ENST00000472044	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.52	□□□□□ -1.21
PTCD3-209	ENST00000472044	KCNH2	Q12809	1159 aa		7.51	□□□□□ -1.21
PTCD3-209	ENST00000472044	MAP10	Q9P2G4	905 aa		7.51	□□□□□ -1.21
PTCD3-209	ENST00000472044	FKBPL	Q9UIM3	349 aa		7.51	□□□□□ -1.21
PTCD3-209	ENST00000472044	KCNC4	Q03721	635 aa		7.49	□□□□□ -1.21

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