RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 BRMS1Q9HCU9 246 aa10.47□□□□□ -0.73
CD47-204ENST00000471694 TOP2AP11388 1531 aaKnown RBP10.47□□□□□ -0.73
CD47-204ENST00000471694 ZC3H6P61129 1189 aaKnown RBP10.47□□□□□ -0.73
CD47-204ENST00000471694 TTC39AQ5SRH9 613 aa10.47□□□□□ -0.73
CD47-204ENST00000471694 SLKQ9H2G2 1235 aaPredicted RBP10.47□□□□□ -0.73
CD47-204ENST00000471694 ANKRD45Q5TZF3 282 aa10.47□□□□□ -0.73
CD47-204ENST00000471694 NBPF8Q3BBV2 869 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 NBPF14Q5TI25 921 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 RCAN3Q9UKA8 241 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 PPP6R1Q9UPN7 881 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 RAPGEF3O95398 923 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 MPHOSPH8Q99549 860 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 RAD54L2Q9Y4B4 1467 aa10.46□□□□□ -0.73
CD47-204ENST00000471694 RALYLQ86SE5 291 aaKnown RBP10.46□□□□□ -0.74
CD47-204ENST00000471694 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.46□□□□□ -0.74
CD47-204ENST00000471694 PHF14O94880 888 aa10.46□□□□□ -0.74
CD47-204ENST00000471694 AK7Q96M32 723 aa10.46□□□□□ -0.74
CD47-204ENST00000471694 BCL2L13Q9BXK5 485 aa10.46□□□□□ -0.74
CD47-204ENST00000471694 POLD1P28340 1107 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 EPS15P42566 896 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 TPM1P09493 284 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 FOSBP53539 338 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 AFAP1Q8N556 730 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 GBP4Q96PP9 640 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 CA8P35219 290 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 MRC2Q9UBG0 1479 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 ST18O60284 1047 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 MSNP26038 577 aaKnown RBP10.45□□□□□ -0.74
CD47-204ENST00000471694 ST20-MTHFSA0A0A6YYL1 179 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 MTHFSP49914 203 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 STK11IPQ8N1F8 1099 aa10.45□□□□□ -0.74
CD47-204ENST00000471694 SAFBQ15424 915 aaKnown RBP eCLIP10.44□□□□□ -0.74
CD47-204ENST00000471694 L3MBTL2Q969R5 705 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 ZNF428Q96B54 188 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 ZNF652Q9Y2D9 606 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 RRP12Q5JTH9 1297 aaKnown RBP10.44□□□□□ -0.74
CD47-204ENST00000471694 GGNBP2Q9H3C7 697 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 RPGRQ92834 1020 aaKnown RBP10.44□□□□□ -0.74
CD47-204ENST00000471694 C8orf37Q96NL8 207 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 MATR3P43243 847 aaKnown RBP eCLIP10.44□□□□□ -0.74
CD47-204ENST00000471694 GAS2L2Q8NHY3 880 aa10.44□□□□□ -0.74
CD47-204ENST00000471694 SYNJ2O15056 1496 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 MYL6BP14649 208 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 ZKSCAN1P17029 563 aaPredicted RBP10.43□□□□□ -0.74
CD47-204ENST00000471694 ZNF622Q969S3 477 aaKnown RBP eCLIP10.43□□□□□ -0.74
CD47-204ENST00000471694 PRAM1Q96QH2 718 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 PLCD3Q8N3E9 789 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 SCLT1Q96NL6 688 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 XBP1P17861 261 aa10.43□□□□□ -0.74
CD47-204ENST00000471694 VPS8Q8N3P4 1428 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 PTMSP20962 102 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 SART3Q15020 963 aaKnown RBP10.42□□□□□ -0.74
CD47-204ENST00000471694 RNF20Q5VTR2 975 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 DNAJC2Q99543 621 aaKnown RBP10.42□□□□□ -0.74
CD47-204ENST00000471694 BEGAINQ9BUH8 593 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 TMOD3Q9NYL9 352 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 ROCK1Q13464 1354 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 HSP90AB4PQ58FF6 505 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 ANKRD20A12PQ8NF67 263 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 CDK5RAP3Q96JB5 506 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 RAB3GAP2Q9H2M9 1393 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 FGD5Q6ZNL6 1462 aa10.42□□□□□ -0.74
CD47-204ENST00000471694 NAP1L5Q96NT1 182 aaPredicted RBP10.42□□□□□ -0.74
CD47-204ENST00000471694 TIMELESSQ9UNS1 1208 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 STARD3NLO95772 234 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 CRBNQ96SW2 442 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 ANKIB1Q9P2G1 1089 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 ERC2O15083 957 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 CCDC158Q5M9N0 1113 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 ZNF530Q6P9A1 599 aaPredicted RBP10.41□□□□□ -0.74
CD47-204ENST00000471694 HOOK1Q9UJC3 728 aaKnown RBP10.41□□□□□ -0.74
CD47-204ENST00000471694 GRIN2BQ13224 1484 aa10.41□□□□□ -0.74
CD47-204ENST00000471694 KRT18P05783 430 aaKnown RBP10.41□□□□□ -0.74
CD47-204ENST00000471694 UBTFL1P0CB47 393 aaPredicted RBP10.4□□□□□ -0.74
CD47-204ENST00000471694 GOLGA6L1Q8N7Z2 621 aa10.4□□□□□ -0.74
CD47-204ENST00000471694 KIF15Q9NS87 1388 aa10.4□□□□□ -0.74
CD47-204ENST00000471694 VTI1AQ96AJ9 217 aa10.4□□□□□ -0.74
CD47-204ENST00000471694 IGHMBP2P38935 993 aaKnown RBP10.4□□□□□ -0.74
CD47-204ENST00000471694 CCDC30Q5VVM6 783 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 ZKSCAN2Q63HK3 967 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 PHLDB1Q86UU1 1377 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 API5Q9BZZ5 524 aaKnown RBP10.39□□□□□ -0.75
CD47-204ENST00000471694 FOXD4L6Q3SYB3 417 aaPredicted RBP10.39□□□□□ -0.75
CD47-204ENST00000471694 FOXD4L3Q6VB84 417 aaPredicted RBP10.39□□□□□ -0.75
CD47-204ENST00000471694 CRACR2BQ8N4Y2 399 aaPredicted RBP10.39□□□□□ -0.75
CD47-204ENST00000471694 CDK19Q9BWU1 502 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 WWC3Q9ULE0 1092 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 GNAI1P63096 354 aa10.39□□□□□ -0.75
CD47-204ENST00000471694 SMARCA4P51532 1647 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 EXOC5O00471 708 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 SCAPERQ9BY12 1400 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 CCDC57Q2TAC2 916 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 LRPPRCP42704 1394 aaKnown RBP10.38□□□□□ -0.75
CD47-204ENST00000471694 ZNF76P36508 570 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 BIN2Q9UBW5 565 aaPredicted RBP10.38□□□□□ -0.75
CD47-204ENST00000471694 MPRIPQ6WCQ1 1025 aa10.38□□□□□ -0.75
CD47-204ENST00000471694 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.38□□□□□ -0.75
CD47-204ENST00000471694 NAP1L1P55209 391 aaKnown RBP10.37□□□□□ -0.75
CD47-204ENST00000471694 CCDC97Q96F63 343 aaPredicted RBP10.37□□□□□ -0.75
CD47-204ENST00000471694 RFC4P35249 363 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms