RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SIRT1Q96EB6 747 aa12.85□□□□□ -0.35
VPS52-216ENST00000471309 PANK3Q9H999 370 aa12.85□□□□□ -0.35
VPS52-216ENST00000471309 RALBP1Q15311 655 aa12.84□□□□□ -0.35
VPS52-216ENST00000471309 YTHDC1Q96MU7 727 aaKnown RBP12.84□□□□□ -0.35
VPS52-216ENST00000471309 PTCH1Q13635 1447 aa12.84□□□□□ -0.35
VPS52-216ENST00000471309 NPC1L1Q9UHC9 1359 aa12.83□□□□□ -0.36
VPS52-216ENST00000471309 BCANQ96GW7 911 aa12.83□□□□□ -0.36
VPS52-216ENST00000471309 POGKQ9P215 609 aa12.83□□□□□ -0.36
VPS52-216ENST00000471309 ATAD2Q6PL18 1390 aa12.82□□□□□ -0.36
VPS52-216ENST00000471309 PIK3R4Q99570 1358 aa12.82□□□□□ -0.36
VPS52-216ENST00000471309 PLEKHH1Q9ULM0 1364 aa12.82□□□□□ -0.36
VPS52-216ENST00000471309 CENPBP07199 599 aaPredicted RBP12.82□□□□□ -0.36
VPS52-216ENST00000471309 TBX22Q9Y458 520 aa12.82□□□□□ -0.36
VPS52-216ENST00000471309 PTPRUQ92729 1446 aa12.81□□□□□ -0.36
VPS52-216ENST00000471309 MYBBP1AQ9BQG0 1328 aaKnown RBP12.81□□□□□ -0.36
VPS52-216ENST00000471309 MINK1Q8N4C8 1332 aaPredicted RBP12.8□□□□□ -0.36
VPS52-216ENST00000471309 ANKRD36BQ8N2N9 1353 aa12.8□□□□□ -0.36
VPS52-216ENST00000471309 ROBO2Q9HCK4 1378 aa12.8□□□□□ -0.36
VPS52-216ENST00000471309 SAFB2Q14151 953 aaKnown RBP eCLIP12.79□□□□□ -0.36
VPS52-216ENST00000471309 KNSTRNQ9Y448 316 aa12.79□□□□□ -0.36
VPS52-216ENST00000471309 BRD4O60885 1362 aaPredicted RBP12.79□□□□□ -0.36
VPS52-216ENST00000471309 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.79□□□□□ -0.36
VPS52-216ENST00000471309 TOPAZ1Q8N9V7 1692 aa12.78□□□□□ -0.36
VPS52-216ENST00000471309 AMER1Q5JTC6 1135 aaPredicted RBP12.78□□□□□ -0.36
VPS52-216ENST00000471309 ANKLE2Q86XL3 938 aa12.78□□□□□ -0.36
VPS52-216ENST00000471309 SLC26A8Q96RN1 970 aa12.78□□□□□ -0.36
VPS52-216ENST00000471309 CHD2O14647 1828 aaKnown RBP12.78□□□□□ -0.36
VPS52-216ENST00000471309 ATP7BP35670 1465 aa12.78□□□□□ -0.36
VPS52-216ENST00000471309 SRPK2P78362 688 aaKnown RBP12.77□□□□□ -0.37
VPS52-216ENST00000471309 WAPLQ7Z5K2 1190 aa12.77□□□□□ -0.37
VPS52-216ENST00000471309 MRS2Q9HD23 443 aa12.77□□□□□ -0.37
VPS52-216ENST00000471309 CABP2Q9NPB3 220 aa12.77□□□□□ -0.37
VPS52-216ENST00000471309 NPHP4O75161 1426 aaPredicted RBP12.77□□□□□ -0.37
VPS52-216ENST00000471309 NSD3Q9BZ95 1437 aa12.77□□□□□ -0.37
VPS52-216ENST00000471309 NWD1Q149M9 1564 aa12.77□□□□□ -0.37
VPS52-216ENST00000471309 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
VPS52-216ENST00000471309 CD163L1Q9NR16 1453 aa12.76□□□□□ -0.37
VPS52-216ENST00000471309 ANKRD26Q9UPS8 1709 aa12.76□□□□□ -0.37
VPS52-216ENST00000471309 CC2D1BQ5T0F9 858 aaKnown RBP12.75□□□□□ -0.37
VPS52-216ENST00000471309 NLRP13Q86W25 1043 aa12.75□□□□□ -0.37
VPS52-216ENST00000471309 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
VPS52-216ENST00000471309 CDK19Q9BWU1 502 aa12.75□□□□□ -0.37
VPS52-216ENST00000471309 CARD14Q9BXL6 1004 aa12.75□□□□□ -0.37
VPS52-216ENST00000471309 SLC12A5Q9H2X9 1139 aa12.75□□□□□ -0.37
VPS52-216ENST00000471309 CDC42BPGQ6DT37 1551 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 A0A1W2PP64 1363 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 NSD2O96028 1365 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 WASLO00401 505 aaPredicted RBP12.74□□□□□ -0.37
VPS52-216ENST00000471309 AMOTL2Q9Y2J4 779 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 KIF20BQ96Q89 1820 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 ITSN1Q15811 1721 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 MON2Q7Z3U7 1717 aa12.74□□□□□ -0.37
VPS52-216ENST00000471309 CNGB1Q14028 1251 aaPredicted RBP12.73□□□□□ -0.37
VPS52-216ENST00000471309 AKAP12Q02952 1782 aa12.73□□□□□ -0.37
VPS52-216ENST00000471309 PPIP5K1Q6PFW1 1433 aa12.71□□□□□ -0.37
VPS52-216ENST00000471309 NALCNQ8IZF0 1738 aa12.71□□□□□ -0.37
VPS52-216ENST00000471309 TERF2IPQ9NYB0 399 aa12.71□□□□□ -0.37
VPS52-216ENST00000471309 FMN2Q9NZ56 1722 aa12.71□□□□□ -0.38
VPS52-216ENST00000471309 CGNL1Q0VF96 1302 aa12.7□□□□□ -0.38
VPS52-216ENST00000471309 NRKQ7Z2Y5 1582 aa12.7□□□□□ -0.38
VPS52-216ENST00000471309 LMTK3Q96Q04 1460 aa12.7□□□□□ -0.38
VPS52-216ENST00000471309 CPSF1Q10570 1443 aaKnown RBP12.7□□□□□ -0.38
VPS52-216ENST00000471309 PPP2R1AP30153 589 aa12.69□□□□□ -0.38
VPS52-216ENST00000471309 PNISRQ8TF01 805 aaKnown RBP12.69□□□□□ -0.38
VPS52-216ENST00000471309 INSRP06213 1382 aa12.69□□□□□ -0.38
VPS52-216ENST00000471309 NKTRP30414 1462 aaKnown RBP12.68□□□□□ -0.38
VPS52-216ENST00000471309 KCNA6P17658 529 aa12.68□□□□□ -0.38
VPS52-216ENST00000471309 HDGFL2Q7Z4V5 671 aaPredicted RBP12.68□□□□□ -0.38
VPS52-216ENST00000471309 ANKARQ7Z5J8 1434 aa12.68□□□□□ -0.38
VPS52-216ENST00000471309 FAM9BQ8IZU0 186 aa12.67□□□□□ -0.38
VPS52-216ENST00000471309 NUDT16Q96DE0 195 aaKnown RBP12.67□□□□□ -0.38
VPS52-216ENST00000471309 EDC4Q6P2E9 1401 aaKnown RBP12.67□□□□□ -0.38
VPS52-216ENST00000471309 PRR36Q9H6K5 1346 aa12.66□□□□□ -0.38
VPS52-216ENST00000471309 NCKAP5LQ9HCH0 1330 aa12.66□□□□□ -0.38
VPS52-216ENST00000471309 CABP1Q9NZU7 370 aa12.66□□□□□ -0.38
VPS52-216ENST00000471309 CCDC61Q9Y6R9 512 aa12.66□□□□□ -0.38
VPS52-216ENST00000471309 ADGRL3Q9HAR2 1447 aa12.65□□□□□ -0.38
VPS52-216ENST00000471309 HNRNPUQ00839 825 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS52-216ENST00000471309 BLMP54132 1417 aaPredicted RBP12.64□□□□□ -0.39
VPS52-216ENST00000471309 MORC1Q86VD1 984 aa12.63□□□□□ -0.39
VPS52-216ENST00000471309 FBXO41Q8TF61 875 aa12.63□□□□□ -0.39
VPS52-216ENST00000471309 POLR3AO14802 1390 aaPredicted RBP12.63□□□□□ -0.39
VPS52-216ENST00000471309 SHPRHQ149N8 1683 aa12.63□□□□□ -0.39
VPS52-216ENST00000471309 STRCQ7RTU9 1775 aa12.63□□□□□ -0.39
VPS52-216ENST00000471309 RGPD8O14715 1765 aaPredicted RBP12.62□□□□□ -0.39
VPS52-216ENST00000471309 ZBED9Q6R2W3 1325 aa12.62□□□□□ -0.39
VPS52-216ENST00000471309 PLEKHG3A1L390 1219 aa12.61□□□□□ -0.39
VPS52-216ENST00000471309 USP6P35125 1406 aa12.61□□□□□ -0.39
VPS52-216ENST00000471309 STRCP1A6NGW2 1772 aa12.61□□□□□ -0.39
VPS52-216ENST00000471309 FYB1O15117 783 aa12.6□□□□□ -0.39
VPS52-216ENST00000471309 ZNF692Q9BU19 519 aaPredicted RBP12.6□□□□□ -0.39
VPS52-216ENST00000471309 USP54Q70EL1 1684 aa12.59□□□□□ -0.39
VPS52-216ENST00000471309 SSH2Q76I76 1423 aa12.59□□□□□ -0.39
VPS52-216ENST00000471309 GGNBP2Q9H3C7 697 aa12.58□□□□□ -0.4
VPS52-216ENST00000471309 NCOA3Q9Y6Q9 1424 aa12.58□□□□□ -0.4
VPS52-216ENST00000471309 SCAF1Q9H7N4 1312 aaKnown RBP12.58□□□□□ -0.4
VPS52-216ENST00000471309 SMG6Q86US8 1419 aaKnown RBP12.57□□□□□ -0.4
VPS52-216ENST00000471309 HSPA2P54652 639 aa12.57□□□□□ -0.4
VPS52-216ENST00000471309 COL3A1P02461 1466 aaPredicted RBP12.57□□□□□ -0.4
VPS52-216ENST00000471309 KIF1AQ12756 1690 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms