RNA–Protein interactions for RNA: ENST00000470837.1

CCM2-204, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-204ENST00000470837 C14orf37Q86TY3 774 aa13.42□□□□□ -0.26
CCM2-204ENST00000470837 TMC1Q8TDI8 760 aa13.42□□□□□ -0.26
CCM2-204ENST00000470837 SETD1AO15047 1707 aaKnown RBP13.42□□□□□ -0.26
CCM2-204ENST00000470837 PTPRUQ92729 1446 aa13.41□□□□□ -0.26
CCM2-204ENST00000470837 CPS1P31327 1500 aa13.41□□□□□ -0.26
CCM2-204ENST00000470837 ATAD2Q6PL18 1390 aa13.41□□□□□ -0.26
CCM2-204ENST00000470837 PLEKHH1Q9ULM0 1364 aa13.41□□□□□ -0.26
CCM2-204ENST00000470837 ARHGEF28Q8N1W1 1705 aaKnown RBP13.41□□□□□ -0.26
CCM2-204ENST00000470837 QRICH2Q9H0J4 1663 aa13.4□□□□□ -0.26
CCM2-204ENST00000470837 CDK19Q9BWU1 502 aa13.4□□□□□ -0.26
CCM2-204ENST00000470837 CABP2Q9NPB3 220 aa13.4□□□□□ -0.26
CCM2-204ENST00000470837 WASLO00401 505 aaPredicted RBP13.39□□□□□ -0.27
CCM2-204ENST00000470837 PROSER2Q86WR7 435 aaPredicted RBP13.39□□□□□ -0.27
CCM2-204ENST00000470837 KNDC1Q76NI1 1749 aa13.39□□□□□ -0.27
CCM2-204ENST00000470837 NINLQ9Y2I6 1382 aa13.38□□□□□ -0.27
CCM2-204ENST00000470837 PANK3Q9H999 370 aa13.37□□□□□ -0.27
CCM2-204ENST00000470837 KNSTRNQ9Y448 316 aa13.37□□□□□ -0.27
CCM2-204ENST00000470837 TERF2IPQ9NYB0 399 aa13.36□□□□□ -0.27
CCM2-204ENST00000470837 HDGFL2Q7Z4V5 671 aaPredicted RBP13.35□□□□□ -0.27
CCM2-204ENST00000470837 TULP4Q9NRJ4 1543 aa13.34□□□□□ -0.27
CCM2-204ENST00000470837 XRN1Q8IZH2 1706 aaKnown RBP13.34□□□□□ -0.27
CCM2-204ENST00000470837 NKTRP30414 1462 aaKnown RBP13.34□□□□□ -0.27
CCM2-204ENST00000470837 NUDT16Q96DE0 195 aaKnown RBP13.33□□□□□ -0.28
CCM2-204ENST00000470837 SLC12A5Q9H2X9 1139 aa13.33□□□□□ -0.28
CCM2-204ENST00000470837 CCDC61Q9Y6R9 512 aa13.33□□□□□ -0.28
CCM2-204ENST00000470837 CNGB1Q14028 1251 aaPredicted RBP13.31□□□□□ -0.28
CCM2-204ENST00000470837 MIER1Q8N108 512 aa13.31□□□□□ -0.28
CCM2-204ENST00000470837 CABP1Q9NZU7 370 aa13.31□□□□□ -0.28
CCM2-204ENST00000470837 NWD1Q149M9 1564 aa13.31□□□□□ -0.28
CCM2-204ENST00000470837 CHD2O14647 1828 aaKnown RBP13.3□□□□□ -0.28
CCM2-204ENST00000470837 NUTM2FA1L443 756 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 ATF3P18847 181 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 RBM33Q96EV2 1170 aaKnown RBP13.3□□□□□ -0.28
CCM2-204ENST00000470837 C19orf44Q9H6X5 657 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 KTN1Q86UP2 1357 aaKnown RBP13.3□□□□□ -0.28
CCM2-204ENST00000470837 ANKRD36BQ8N2N9 1353 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 ADGRL3Q9HAR2 1447 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 NCOA3Q9Y6Q9 1424 aa13.3□□□□□ -0.28
CCM2-204ENST00000470837 ADGRB2O60241 1585 aa13.29□□□□□ -0.28
CCM2-204ENST00000470837 TMEM94Q12767 1356 aa13.29□□□□□ -0.28
CCM2-204ENST00000470837 PPIP5K1Q6PFW1 1433 aa13.29□□□□□ -0.28
CCM2-204ENST00000470837 RALBP1Q15311 655 aa13.28□□□□□ -0.28
CCM2-204ENST00000470837 ZNF692Q9BU19 519 aaPredicted RBP13.28□□□□□ -0.28
CCM2-204ENST00000470837 CGNL1Q0VF96 1302 aa13.28□□□□□ -0.28
CCM2-204ENST00000470837 ZNF335Q9H4Z2 1342 aaPredicted RBP13.28□□□□□ -0.28
CCM2-204ENST00000470837 MSH6P52701 1360 aa13.28□□□□□ -0.28
CCM2-204ENST00000470837 STRCQ7RTU9 1775 aa13.27□□□□□ -0.28
CCM2-204ENST00000470837 ANKARQ7Z5J8 1434 aa13.27□□□□□ -0.29
CCM2-204ENST00000470837 PER1O15534 1290 aaPredicted RBP13.26□□□□□ -0.29
CCM2-204ENST00000470837 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
CCM2-204ENST00000470837 CADPS2Q86UW7 1296 aa13.26□□□□□ -0.29
CCM2-204ENST00000470837 NGDNQ8NEJ9 315 aaKnown RBP13.26□□□□□ -0.29
CCM2-204ENST00000470837 NSD3Q9BZ95 1437 aa13.26□□□□□ -0.29
CCM2-204ENST00000470837 PRKRIP1Q9H875 184 aaPredicted RBP13.26□□□□□ -0.29
CCM2-204ENST00000470837 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.26□□□□□ -0.29
CCM2-204ENST00000470837 ATP7BP35670 1465 aa13.25□□□□□ -0.29
CCM2-204ENST00000470837 PLEKHG3A1L390 1219 aa13.25□□□□□ -0.29
CCM2-204ENST00000470837 CDC42BPGQ6DT37 1551 aa13.24□□□□□ -0.29
CCM2-204ENST00000470837 A0A1W2PP64 1363 aa13.24□□□□□ -0.29
CCM2-204ENST00000470837 PRR36Q9H6K5 1346 aa13.24□□□□□ -0.29
CCM2-204ENST00000470837 ESCO1Q5FWF5 840 aa13.24□□□□□ -0.29
CCM2-204ENST00000470837 CCER2I3L3R5 266 aa13.23□□□□□ -0.29
CCM2-204ENST00000470837 PMFBP1Q8TBY8 1022 aa13.23□□□□□ -0.29
CCM2-204ENST00000470837 CARD14Q9BXL6 1004 aa13.23□□□□□ -0.29
CCM2-204ENST00000470837 DCCP43146 1447 aa13.22□□□□□ -0.29
CCM2-204ENST00000470837 NPC1L1Q9UHC9 1359 aa13.22□□□□□ -0.29
CCM2-204ENST00000470837 ACEP12821 1306 aa13.22□□□□□ -0.29
CCM2-204ENST00000470837 AMER1Q5JTC6 1135 aaPredicted RBP13.22□□□□□ -0.29
CCM2-204ENST00000470837 MORC1Q86VD1 984 aa13.22□□□□□ -0.29
CCM2-204ENST00000470837 PHF8Q9UPP1 1060 aa13.22□□□□□ -0.29
CCM2-204ENST00000470837 MYOM1P52179 1685 aa13.21□□□□□ -0.29
CCM2-204ENST00000470837 NSD2O96028 1365 aa13.21□□□□□ -0.29
CCM2-204ENST00000470837 MYBBP1AQ9BQG0 1328 aaKnown RBP13.2□□□□□ -0.3
CCM2-204ENST00000470837 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCM2-204ENST00000470837 EDC4Q6P2E9 1401 aaKnown RBP13.2□□□□□ -0.3
CCM2-204ENST00000470837 LRRC7Q96NW7 1537 aa13.19□□□□□ -0.3
CCM2-204ENST00000470837 PSME1Q06323 249 aa13.19□□□□□ -0.3
CCM2-204ENST00000470837 CPSF1Q10570 1443 aaKnown RBP13.19□□□□□ -0.3
CCM2-204ENST00000470837 NALCNQ8IZF0 1738 aa13.19□□□□□ -0.3
CCM2-204ENST00000470837 NLRP13Q86W25 1043 aa13.18□□□□□ -0.3
CCM2-204ENST00000470837 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
CCM2-204ENST00000470837 PARD3Q8TEW0 1356 aa13.18□□□□□ -0.3
CCM2-204ENST00000470837 CD163L1Q9NR16 1453 aa13.17□□□□□ -0.3
CCM2-204ENST00000470837 FMN2Q9NZ56 1722 aa13.17□□□□□ -0.3
CCM2-204ENST00000470837 PAK3O75914 559 aaPredicted RBP13.17□□□□□ -0.3
CCM2-204ENST00000470837 COG3Q96JB2 828 aa13.17□□□□□ -0.3
CCM2-204ENST00000470837 GGNBP2Q9H3C7 697 aa13.17□□□□□ -0.3
CCM2-204ENST00000470837 POLR3AO14802 1390 aaPredicted RBP13.17□□□□□ -0.3
CCM2-204ENST00000470837 BRD4O60885 1362 aaPredicted RBP13.17□□□□□ -0.3
CCM2-204ENST00000470837 C1orf167Q5SNV9 1468 aa13.16□□□□□ -0.3
CCM2-204ENST00000470837 TTC21AQ8NDW8 1320 aa13.16□□□□□ -0.3
CCM2-204ENST00000470837 USP6P35125 1406 aa13.16□□□□□ -0.3
CCM2-204ENST00000470837 ITSN1Q15811 1721 aa13.16□□□□□ -0.3
CCM2-204ENST00000470837 TTC21BQ7Z4L5 1316 aa13.15□□□□□ -0.3
CCM2-204ENST00000470837 FYB1O15117 783 aa13.15□□□□□ -0.3
CCM2-204ENST00000470837 TNNT2P45379 298 aaPredicted RBP13.15□□□□□ -0.3
CCM2-204ENST00000470837 ORAI2Q96SN7 254 aa13.15□□□□□ -0.3
CCM2-204ENST00000470837 SLAIN2Q9P270 581 aa13.15□□□□□ -0.3
CCM2-204ENST00000470837 STRCP1A6NGW2 1772 aa13.15□□□□□ -0.31
CCM2-204ENST00000470837 MST1RQ04912 1400 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms